Wall clock time and date at job start Tue Mar 31 2020 12:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46972 * 2 1 4 4 C 1.34918 * 119.99976 * 95.00577 * 3 2 1 5 5 C 1.46228 * 119.99659 * 179.97438 * 4 3 2 6 6 O 1.21616 * 120.00696 * 359.97438 * 5 4 3 7 7 O 1.34911 * 119.99664 * 179.97438 * 5 4 3 8 8 C 1.42898 * 117.00247 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.47333 * 180.02562 * 8 7 5 10 10 O 1.21295 * 120.00271 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00212 * 180.02562 * 9 8 7 12 12 C 1.37099 * 120.00474 * 179.97438 * 11 9 8 13 13 H 1.07998 * 119.99613 * 0.02562 * 12 11 9 14 14 C 1.38949 * 120.00383 * 179.97438 * 12 11 9 15 15 N 1.31419 * 119.99801 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00198 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47606 * 89.99946 * 16 14 12 18 18 H 1.48502 * 109.47396 * 210.00067 * 16 14 12 19 19 H 1.48502 * 109.47187 * 329.99807 * 16 14 12 20 20 C 1.47177 * 119.99962 * 274.99913 * 3 2 1 21 21 C 1.39858 * 120.16919 * 245.00312 * 20 3 2 22 22 C 1.37887 * 119.82069 * 179.97438 * 21 20 3 23 23 C 1.38408 * 120.17153 * 0.27810 * 22 21 20 24 24 C 1.50701 * 119.82086 * 179.69923 * 23 22 21 25 25 C 1.38407 * 120.34838 * 359.44594 * 23 22 21 26 26 C 1.37879 * 120.17339 * 0.55211 * 25 23 22 27 27 H 1.09001 * 109.47580 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47361 * 299.99920 * 1 2 3 29 29 H 1.08999 * 109.47148 * 59.99745 * 1 2 3 30 30 H 1.08998 * 109.46942 * 239.99849 * 2 1 3 31 31 H 1.08999 * 109.47148 * 120.00255 * 2 1 3 32 32 H 1.07997 * 119.99502 * 359.97438 * 4 3 2 33 33 H 1.09008 * 109.46715 * 300.00090 * 8 7 5 34 34 H 1.09000 * 109.47309 * 59.99787 * 8 7 5 35 35 H 0.97004 * 119.99847 * 359.97438 * 11 9 8 36 36 H 0.96995 * 120.00180 * 180.02562 * 15 14 12 37 37 H 1.07995 * 120.08647 * 359.95580 * 21 20 3 38 38 H 1.08002 * 119.90932 * 179.97438 * 22 21 20 39 39 H 1.08993 * 109.47204 * 89.99881 * 24 23 22 40 40 H 1.09001 * 109.46644 * 209.99962 * 24 23 22 41 41 H 1.09000 * 109.47409 * 329.99766 * 24 23 22 42 42 H 1.08003 * 119.91096 * 180.28307 * 25 23 22 43 43 H 1.08000 * 120.09004 * 179.75014 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3533 2.0229 1.1640 5 6 2.8412 3.4013 1.1638 6 8 2.9581 4.0050 0.1146 7 8 3.1616 4.0035 2.3278 8 6 3.6312 5.3511 2.2534 9 6 3.9377 5.8536 3.6406 10 8 3.7701 5.1292 4.5989 11 7 4.3971 7.1084 3.8166 12 6 4.6755 7.5658 5.0787 13 1 4.5271 6.9205 5.9318 14 6 5.1497 8.8592 5.2601 15 7 5.3317 9.6440 4.2218 16 14 5.5297 9.4822 6.9796 17 1 6.9453 9.1824 7.3132 18 1 5.3082 10.9496 7.0347 19 1 4.6375 8.8099 7.9580 20 6 2.1729 2.1516 -1.2697 21 6 3.4377 2.5466 -1.7171 22 6 3.5612 3.2304 -2.9081 23 6 2.4369 3.5312 -3.6572 24 6 2.5803 4.2850 -4.9543 25 6 1.1823 3.1389 -3.2240 26 6 1.0423 2.4544 -2.0354 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.2498 1.4866 2.0957 33 1 4.5356 5.3877 1.6459 34 1 2.8637 5.9788 1.8005 35 1 4.5308 7.6879 3.0503 36 1 5.6631 10.5468 4.3483 37 1 4.3153 2.3167 -1.1312 38 1 4.5372 3.5364 -3.2547 39 1 2.7140 3.5776 -5.7727 40 1 1.6835 4.8790 -5.1303 41 1 3.4471 4.9435 -4.8980 42 1 0.3103 3.3734 -3.8165 43 1 0.0623 2.1524 -1.6966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745126637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:55 Heat of formation + Delta-G solvation = -106.022512 kcal Electronic energy + Delta-G solvation = -25493.342944 eV Core-core repulsion = 21695.992648 eV Total energy + Delta-G solvation = -3797.350296 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.78574 -40.47286 -39.84264 -37.80753 -36.74067 -36.04965 -33.44286 -33.13523 -32.06016 -31.56757 -30.02504 -27.88739 -26.67290 -25.42359 -23.53420 -22.87884 -22.40578 -21.46540 -20.12457 -19.96150 -19.02267 -17.99153 -17.74512 -17.42449 -16.65967 -16.34630 -16.25033 -15.91119 -15.61099 -15.52316 -15.32301 -14.96759 -14.62454 -14.45812 -14.33069 -13.96663 -13.70094 -13.68223 -13.57514 -13.28178 -13.01836 -12.95280 -12.82137 -12.57461 -12.49753 -12.19634 -12.12907 -11.90662 -11.77694 -11.62474 -11.59301 -11.40800 -10.53671 -10.42622 -10.14257 -9.73984 -9.15214 -8.54261 -6.05332 -0.25456 0.51669 0.62433 1.34382 1.39610 1.49727 1.60529 1.82289 1.89603 2.29513 2.84690 3.06686 3.10961 3.51548 3.72314 3.94378 3.96846 4.07249 4.09383 4.12948 4.18374 4.20361 4.28045 4.40041 4.51577 4.56220 4.69989 4.78334 4.83622 4.89105 4.93627 5.08915 5.11970 5.19285 5.27187 5.31270 5.34516 5.38704 5.42616 5.56725 5.62150 5.73593 5.86881 6.14197 6.43996 6.73894 7.00557 7.37018 7.90629 8.62942 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016839 B = 0.002687 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.401314 B =10418.732932 C =11742.617433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C 0.042 3.958 4 C -0.207 4.207 5 C 0.481 3.519 6 O -0.514 6.514 7 O -0.342 6.342 8 C 0.076 3.924 9 C 0.436 3.564 10 O -0.618 6.618 11 N -0.557 5.557 12 C -0.340 4.340 13 H 0.084 0.916 14 C -0.009 4.009 15 N -0.916 5.916 16 Si 1.000 3.000 17 H -0.268 1.268 18 H -0.268 1.268 19 H -0.270 1.270 20 C -0.083 4.083 21 C -0.068 4.068 22 C -0.139 4.139 23 C -0.089 4.089 24 C -0.112 4.112 25 C -0.135 4.135 26 C -0.105 4.105 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.399 0.601 36 H 0.281 0.719 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.142 0.858 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.341 -16.592 -18.218 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.126 4.126 3 C 0.041 3.959 4 C -0.226 4.226 5 C 0.329 3.671 6 O -0.405 6.405 7 O -0.258 6.258 8 C -0.002 4.002 9 C 0.223 3.777 10 O -0.505 6.505 11 N -0.195 5.195 12 C -0.468 4.468 13 H 0.102 0.898 14 C -0.210 4.210 15 N -0.556 5.556 16 Si 0.822 3.178 17 H -0.194 1.194 18 H -0.193 1.193 19 H -0.195 1.195 20 C -0.083 4.083 21 C -0.086 4.086 22 C -0.157 4.157 23 C -0.089 4.089 24 C -0.169 4.169 25 C -0.153 4.153 26 C -0.123 4.123 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.179 0.821 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.234 0.766 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.144 0.856 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.159 0.841 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.338 -16.649 -17.901 25.830 hybrid contribution 0.632 1.187 0.567 1.459 sum -7.706 -15.462 -17.334 24.473 Atomic orbital electron populations 1.21821 0.92766 1.03599 1.02478 1.20854 0.97533 0.88949 1.05227 1.21616 0.87740 0.96180 0.90366 1.22190 1.08886 0.90780 1.00748 1.22092 0.74910 0.89358 0.80787 1.90939 1.50994 1.66656 1.31920 1.86235 1.75984 1.27997 1.35557 1.22014 1.01551 0.81471 0.95204 1.20118 0.84020 0.83169 0.90382 1.90515 1.58974 1.57440 1.43582 1.41750 1.56915 1.11244 1.09555 1.19737 1.43427 0.98223 0.85452 0.89781 1.26158 0.95838 0.95289 1.03679 1.69678 1.44891 1.09203 1.31795 0.84838 0.78867 0.77581 0.76509 1.19352 1.19288 1.19508 1.18927 0.94244 1.00552 0.94549 1.21041 0.96147 0.96149 0.95295 1.21048 0.99053 1.00181 0.95397 1.20319 0.93135 0.97874 0.97604 1.20834 1.03186 0.99524 0.93343 1.21155 0.97464 0.99724 0.96948 1.21378 0.97765 0.98709 0.94442 0.89831 0.92532 0.92130 0.88845 0.88350 0.82083 0.88329 0.88491 0.76627 0.90910 0.87619 0.85553 0.89810 0.90717 0.91544 0.84057 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.84 71.98 0.71 -0.89 16 2 C -0.09 -1.12 6.08 29.85 0.18 -0.94 16 3 C 0.04 0.86 4.75 -18.28 -0.09 0.77 16 4 C -0.21 -5.20 9.79 23.58 0.23 -4.97 16 5 C 0.48 16.16 7.75 69.90 0.54 16.70 16 6 O -0.51 -18.26 11.96 19.45 0.23 -18.02 16 7 O -0.34 -13.71 9.65 -51.80 -0.50 -14.21 16 8 C 0.08 3.07 5.85 71.23 0.42 3.49 16 9 C 0.44 22.36 7.86 87.65 0.69 23.05 16 10 O -0.62 -36.57 16.08 15.96 0.26 -36.31 16 11 N -0.56 -29.64 5.29 -306.99 -1.62 -31.27 16 12 C -0.34 -19.52 9.68 84.04 0.81 -18.70 16 13 H 0.08 5.11 7.16 -2.91 -0.02 5.09 16 14 C -0.01 -0.48 5.50 84.92 0.47 -0.01 16 15 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 16 Si 1.00 42.64 29.55 68.60 2.03 44.67 16 17 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 C -0.08 -1.95 3.85 -20.15 -0.08 -2.03 16 21 C -0.07 -1.76 6.96 22.58 0.16 -1.60 16 22 C -0.14 -3.30 9.68 22.23 0.22 -3.08 16 23 C -0.09 -1.88 5.89 -19.78 -0.12 -1.99 16 24 C -0.11 -1.68 10.00 71.24 0.71 -0.97 16 25 C -0.14 -2.69 9.68 22.22 0.22 -2.48 16 26 C -0.11 -2.21 9.51 22.58 0.21 -1.99 16 27 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.65 6.03 -2.39 -0.01 0.64 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.00 8.03 -2.39 -0.02 0.98 16 32 H 0.16 3.42 8.04 -2.91 -0.02 3.39 16 33 H 0.10 3.65 8.13 -2.38 -0.02 3.63 16 34 H 0.10 3.63 8.13 -2.39 -0.02 3.61 16 35 H 0.40 20.07 7.90 -92.71 -0.73 19.34 16 36 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 37 H 0.11 2.78 8.05 -2.91 -0.02 2.76 16 38 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 41 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 42 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 43 H 0.14 2.29 6.22 -2.91 -0.02 2.27 16 Total: -1.00 -72.65 370.40 6.26 -66.40 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.30 Total: 33.58 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 5.28 Total: 4.36 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -1.34 Total: -80.46 kcal Atomic # 8 Polarization: -68.53 SS G_CDS: -0.01 Total: -68.54 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -72.65 6.26 -66.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745126637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.625 kcal (2) G-P(sol) polarization free energy of solvation -72.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds