Wall clock time and date at job start Tue Mar 31 2020 11:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46699 * 2 1 4 4 C 1.52998 * 109.47143 * 294.79609 * 3 2 1 5 5 N 1.46896 * 109.47571 * 54.80120 * 3 2 1 6 6 C 1.46897 * 111.00406 * 180.42392 * 5 3 2 7 7 C 1.50695 * 109.47227 * 173.46343 * 6 5 3 8 8 C 1.38301 * 119.93274 * 89.99934 * 7 6 5 9 9 C 1.38099 * 120.07026 * 180.02562 * 8 7 6 10 10 C 1.38883 * 119.92897 * 359.97438 * 9 8 7 11 11 O 1.35752 * 120.06529 * 180.02562 * 10 9 8 12 12 C 1.34824 * 117.00207 * 359.48079 * 11 10 9 13 13 H 1.07997 * 120.00281 * 355.08397 * 12 11 10 14 14 C 1.38657 * 119.99974 * 175.08647 * 12 11 10 15 15 N 1.31557 * 120.00085 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99968 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47194 * 90.00081 * 16 14 12 18 18 H 1.48501 * 109.47085 * 209.99768 * 16 14 12 19 19 H 1.48497 * 109.47295 * 330.00049 * 16 14 12 20 20 C 1.38879 * 119.86421 * 0.26901 * 10 9 8 21 21 C 1.38102 * 119.92656 * 359.49876 * 20 10 9 22 22 C 1.53002 * 109.47061 * 174.79984 * 3 2 1 23 23 F 1.39899 * 109.46936 * 295.85070 * 22 3 2 24 24 F 1.39906 * 109.47261 * 55.84768 * 22 3 2 25 25 F 1.39897 * 109.47412 * 175.84874 * 22 3 2 26 26 H 1.09004 * 109.47726 * 306.71510 * 1 2 3 27 27 H 1.09001 * 109.47629 * 66.71897 * 1 2 3 28 28 H 1.09004 * 109.46951 * 186.71700 * 1 2 3 29 29 H 1.09004 * 109.47392 * 240.00351 * 2 1 3 30 30 H 1.08996 * 109.47323 * 119.99641 * 2 1 3 31 31 H 1.08998 * 109.47408 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47664 * 300.00621 * 4 3 2 33 33 H 1.09006 * 109.47138 * 60.00087 * 4 3 2 34 34 H 1.00904 * 111.00227 * 56.45972 * 5 3 2 35 35 H 1.09001 * 109.46956 * 53.46246 * 6 5 3 36 36 H 1.08998 * 109.46973 * 293.46040 * 6 5 3 37 37 H 1.07996 * 119.96640 * 359.97438 * 8 7 6 38 38 H 1.08001 * 120.03546 * 179.97438 * 9 8 7 39 39 H 0.97003 * 119.99815 * 180.02562 * 15 14 12 40 40 H 1.07999 * 120.03624 * 179.72393 * 20 10 9 41 41 H 1.08001 * 119.96121 * 180.22384 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 1.6394 2.1250 -1.3095 5 7 1.4504 2.1704 1.1317 6 6 1.9107 3.5651 1.1579 7 6 1.1664 4.3197 2.2291 8 6 1.6722 4.3709 3.5153 9 6 0.9922 5.0612 4.4993 10 6 -0.2006 5.7048 4.1960 11 8 -0.8710 6.3845 5.1610 12 6 -0.3303 6.3870 6.3961 13 1 0.5521 5.7988 6.6005 14 6 -0.9072 7.1446 7.4040 15 7 -1.9824 7.8607 7.1552 16 14 -0.1584 7.1475 9.1154 17 1 0.8476 8.2354 9.2138 18 1 -1.2268 7.3686 10.1228 19 1 0.4994 5.8407 9.3701 20 6 -0.7085 5.6473 2.9047 21 6 -0.0213 4.9594 1.9240 22 6 3.5643 1.4447 0.1307 23 9 3.9267 0.9063 1.3701 24 9 4.1213 0.6722 -0.8941 25 9 4.0387 2.7573 0.0358 26 1 -0.3635 0.6144 0.8238 27 1 -0.3634 0.4062 -0.9440 28 1 -0.3633 -1.0207 0.1202 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 2.0031 3.1526 -1.3097 32 1 2.0768 1.5850 -2.1493 33 1 0.5534 2.1236 -1.4027 34 1 1.6524 1.7064 2.0047 35 1 1.7219 4.0283 0.1894 36 1 2.9793 3.5911 1.3710 37 1 2.5995 3.8699 3.7506 38 1 1.3875 5.1005 5.5036 39 1 -2.3857 8.3910 7.8603 40 1 -1.6381 6.1430 2.6669 41 1 -0.4140 4.9173 0.9188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746483226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:56 Heat of formation + Delta-G solvation = -175.313459 kcal Electronic energy + Delta-G solvation = -27058.847870 eV Core-core repulsion = 22716.636153 eV Total energy + Delta-G solvation = -4342.211717 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.21830 -48.71796 -48.63472 -40.81549 -39.43706 -38.09888 -34.55215 -33.90314 -31.77939 -31.13590 -29.88832 -27.83556 -27.36514 -25.53386 -24.34156 -23.60031 -21.99797 -21.05921 -19.84034 -19.50087 -19.33645 -18.87326 -18.66178 -17.01571 -16.49792 -16.40581 -16.27121 -15.83795 -15.50415 -15.47854 -15.27498 -15.21264 -15.02686 -14.81262 -14.68922 -14.63627 -14.33646 -14.27654 -14.02679 -13.65322 -13.42013 -13.26236 -13.05038 -12.91695 -12.87321 -12.48803 -12.35272 -12.27378 -12.12836 -11.92871 -11.71642 -11.61282 -11.16967 -10.79522 -9.77284 -9.67670 -8.90783 -8.47356 -6.15222 0.62178 0.67635 1.34852 1.43864 1.52128 1.72696 2.17633 2.62863 2.76995 2.93029 2.96880 3.17346 3.37284 3.53140 3.74892 3.83037 4.02324 4.05698 4.22532 4.42104 4.44638 4.50957 4.56554 4.63011 4.69327 4.80807 4.85809 4.93664 5.08514 5.12678 5.15476 5.17234 5.31381 5.35079 5.57148 5.60516 5.72700 5.75232 5.80753 6.03351 6.14933 6.24410 6.97668 7.78864 8.75982 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.002813 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.750217 B = 9949.810056 C =10313.970690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.086 3.914 4 C -0.150 4.150 5 N -0.651 5.651 6 C 0.097 3.903 7 C -0.155 4.155 8 C -0.063 4.063 9 C -0.244 4.244 10 C 0.115 3.885 11 O -0.232 6.232 12 C -0.414 4.414 13 H 0.101 0.899 14 C -0.022 4.022 15 N -0.920 5.920 16 Si 1.017 2.983 17 H -0.264 1.264 18 H -0.270 1.270 19 H -0.254 1.254 20 C -0.205 4.205 21 C -0.042 4.042 22 C 0.409 3.591 23 F -0.193 7.193 24 F -0.185 7.185 25 F -0.187 7.187 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.351 0.649 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.131 0.869 38 H 0.116 0.884 39 H 0.273 0.727 40 H 0.113 0.887 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.076 -16.100 -17.155 25.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C -0.009 4.009 4 C -0.207 4.207 5 N -0.282 5.282 6 C -0.030 4.030 7 C -0.156 4.156 8 C -0.082 4.082 9 C -0.263 4.263 10 C 0.065 3.935 11 O -0.139 6.139 12 C -0.490 4.490 13 H 0.118 0.882 14 C -0.220 4.220 15 N -0.558 5.558 16 Si 0.837 3.163 17 H -0.188 1.188 18 H -0.195 1.195 19 H -0.177 1.177 20 C -0.224 4.224 21 C -0.060 4.060 22 C 0.352 3.648 23 F -0.174 7.174 24 F -0.167 7.167 25 F -0.168 7.168 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.171 0.829 35 H 0.118 0.882 36 H 0.070 0.930 37 H 0.149 0.851 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.166 -15.691 -17.381 25.146 hybrid contribution 1.373 0.330 1.567 2.109 sum 10.539 -15.361 -15.814 24.436 Atomic orbital electron populations 1.21642 0.92848 1.02033 1.03107 1.21642 0.98858 0.90685 1.03814 1.22535 0.82444 0.99419 0.96484 1.22065 1.04996 1.00850 0.92745 1.60738 1.59317 1.02212 1.05884 1.21192 0.96412 0.87325 0.98108 1.19484 0.97719 1.03978 0.94416 1.20911 0.98657 0.96380 0.92233 1.21199 0.97846 1.06244 1.01033 1.19965 0.91757 0.91804 0.89994 1.83945 1.47170 1.64598 1.18155 1.21805 1.13372 1.29859 0.83963 0.88216 1.26571 0.96485 0.94715 1.04200 1.70182 1.21199 1.28849 1.35615 0.84604 0.77842 0.79743 0.74137 1.18843 1.19513 1.17716 1.20474 1.03023 1.07913 0.91021 1.20841 0.93207 0.93629 0.98351 1.22709 0.95701 0.73027 0.73320 1.93147 1.93664 1.86296 1.44335 1.93150 1.88088 1.75656 1.59789 1.93120 1.90905 1.37156 1.95612 0.92060 0.91684 0.92034 0.89083 0.91288 0.91301 0.89834 0.88390 0.82885 0.88244 0.92986 0.85108 0.86628 0.91824 0.86881 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.40 71.98 0.68 -1.11 16 2 C -0.11 -1.44 4.82 30.59 0.15 -1.30 16 3 C 0.09 1.31 0.33 3.53 0.00 1.32 16 4 C -0.15 -1.87 7.75 71.98 0.56 -1.32 16 5 N -0.65 -12.38 4.91 -474.17 -2.33 -14.70 16 6 C 0.10 2.13 4.51 85.56 0.39 2.52 16 7 C -0.15 -4.63 5.45 -19.84 -0.11 -4.74 16 8 C -0.06 -2.16 9.69 22.25 0.22 -1.94 16 9 C -0.24 -10.64 9.16 22.39 0.21 -10.43 16 10 C 0.12 5.74 6.66 22.58 0.15 5.89 16 11 O -0.23 -14.06 9.76 -22.70 -0.22 -14.28 16 12 C -0.41 -24.27 9.48 67.92 0.64 -23.63 16 13 H 0.10 5.39 5.21 -2.91 -0.02 5.37 16 14 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 15 N -0.92 -56.72 13.67 21.61 0.30 -56.43 16 16 Si 1.02 43.07 29.55 68.60 2.03 45.10 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 20 C -0.21 -8.61 9.99 22.39 0.22 -8.39 16 21 C -0.04 -1.35 9.69 22.25 0.22 -1.14 16 22 C 0.41 7.58 2.15 71.98 0.15 7.73 16 23 F -0.19 -4.02 16.36 44.97 0.74 -3.28 16 24 F -0.19 -3.38 16.38 44.97 0.74 -2.64 16 25 F -0.19 -3.86 13.38 44.97 0.60 -3.26 16 26 H 0.06 1.02 7.24 -2.38 -0.02 1.01 16 27 H 0.06 0.73 6.91 -2.39 -0.02 0.71 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.09 0.96 7.87 -2.38 -0.02 0.94 16 30 H 0.07 0.94 7.78 -2.39 -0.02 0.92 16 31 H 0.07 0.92 5.82 -2.39 -0.01 0.91 16 32 H 0.08 0.84 7.91 -2.39 -0.02 0.82 16 33 H 0.10 1.12 6.73 -2.38 -0.02 1.11 16 34 H 0.35 7.03 8.32 -89.69 -0.75 6.28 16 35 H 0.10 1.93 5.91 -2.39 -0.01 1.91 16 36 H 0.05 1.18 5.69 -2.39 -0.01 1.17 16 37 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.12 5.18 5.63 -2.91 -0.02 5.16 16 39 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -68.75 341.55 6.12 -62.63 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.33 Total: 24.22 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 3.94 Total: -37.34 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -2.03 Total: -71.13 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.22 Total: -14.28 kcal Atomic # 9 Polarization: -11.26 SS G_CDS: 2.07 Total: -9.19 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -68.75 6.12 -62.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746483226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.685 kcal (2) G-P(sol) polarization free energy of solvation -68.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds