Wall clock time and date at job start Tue Mar 31 2020 11:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50704 * 119.99908 * 2 1 4 4 C 1.53005 * 109.46557 * 125.00602 * 3 2 1 5 5 C 1.53005 * 109.46812 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47020 * 179.97438 * 5 4 3 7 7 O 1.20819 * 120.00049 * 359.97438 * 6 5 4 8 8 O 1.34229 * 119.99889 * 179.97438 * 6 5 4 9 9 C 1.45200 * 117.00073 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47457 * 179.97438 * 9 8 6 11 11 O 1.21281 * 119.99956 * 354.94807 * 10 9 8 12 12 N 1.34770 * 120.00036 * 174.93698 * 10 9 8 13 13 C 1.37139 * 120.00260 * 5.68554 * 12 10 9 14 14 H 1.07997 * 120.00129 * 55.66062 * 13 12 10 15 15 C 1.38897 * 120.00001 * 235.66731 * 13 12 10 16 16 N 1.31420 * 119.99424 * 9.24264 * 15 13 12 17 17 Si 1.86801 * 119.99846 * 189.24531 * 15 13 12 18 18 H 1.48495 * 109.47046 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.46975 * 119.99965 * 17 15 13 20 20 H 1.48494 * 109.46700 * 239.99669 * 17 15 13 21 21 C 1.39795 * 119.99710 * 185.68144 * 12 10 9 22 22 C 1.38961 * 120.07573 * 175.19461 * 21 12 10 23 23 C 1.38081 * 119.92419 * 179.97438 * 22 21 12 24 24 C 1.38311 * 120.07426 * 0.02562 * 23 22 21 25 25 C 1.38312 * 120.15706 * 359.97438 * 24 23 22 26 26 C 1.38079 * 120.07859 * 0.02562 * 25 24 23 27 27 H 1.07999 * 119.99421 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.00122 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.99985 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.46981 * 5.00590 * 3 2 1 31 31 H 1.09001 * 109.47110 * 245.00204 * 3 2 1 32 32 H 1.08994 * 109.47485 * 60.00297 * 4 3 2 33 33 H 1.09001 * 109.47086 * 299.99617 * 4 3 2 34 34 H 1.08999 * 109.47546 * 59.99484 * 5 4 3 35 35 H 1.09001 * 109.46688 * 299.99500 * 5 4 3 36 36 H 1.09005 * 109.46833 * 59.99999 * 9 8 6 37 37 H 1.08999 * 109.47188 * 300.00582 * 9 8 6 38 38 H 0.97008 * 119.99371 * 184.98307 * 16 15 13 39 39 H 1.08007 * 120.03887 * 359.70121 * 22 21 12 40 40 H 1.08002 * 119.96358 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.92028 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.95882 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.04261 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0352 1.3329 1.1816 5 6 3.7997 2.6583 1.1820 6 6 4.7563 2.6860 2.3462 7 8 4.8196 1.7428 3.0986 8 8 5.5379 3.7585 2.5472 9 6 6.4346 3.7161 3.6884 10 6 7.2268 4.9965 3.7527 11 8 7.1203 5.8205 2.8692 12 7 8.0534 5.2260 4.7921 13 6 8.2632 4.2480 5.7304 14 1 8.6131 3.2730 5.4251 15 6 8.0255 4.5115 7.0733 16 7 7.4307 5.6283 7.4284 17 14 8.5514 3.2785 8.3743 18 1 9.1943 2.1113 7.7189 19 1 9.5170 3.9197 9.3024 20 1 7.3602 2.8241 9.1356 21 6 8.6970 6.4610 4.9138 22 6 9.4703 6.7358 6.0353 23 6 10.1051 7.9565 6.1520 24 6 9.9716 8.9053 5.1545 25 6 9.2027 8.6352 4.0370 26 6 8.5651 7.4166 3.9137 27 1 -0.5399 0.9354 0.0004 28 1 -0.5400 -0.9352 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6213 1.4027 -0.9314 32 1 3.7401 0.5065 1.0920 33 1 2.4774 1.2354 2.1130 34 1 3.0946 3.4846 1.2719 35 1 4.3575 2.7562 0.2507 36 1 7.1166 2.8723 3.5834 37 1 5.8533 3.6017 4.6033 38 1 7.3295 5.8461 8.3683 39 1 9.5711 5.9971 6.8168 40 1 10.7059 8.1709 7.0235 41 1 10.4688 9.8594 5.2486 42 1 9.1010 9.3783 3.2599 43 1 7.9646 7.2065 3.0410 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748233597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:26 Heat of formation + Delta-G solvation = -63.130558 kcal Electronic energy + Delta-G solvation = -25686.344476 eV Core-core repulsion = 21890.854115 eV Total energy + Delta-G solvation = -3795.490361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.35184 -39.61375 -37.37516 -36.52931 -35.78491 -35.09915 -32.66501 -32.06867 -29.86888 -29.61005 -28.14083 -26.80138 -25.25155 -22.84248 -21.77766 -21.21328 -20.37432 -19.97804 -19.61492 -17.97769 -17.44958 -16.63793 -16.13438 -15.96951 -15.72853 -15.50575 -15.11015 -14.79930 -14.36062 -14.13766 -13.78262 -13.53676 -13.09597 -13.01527 -12.90326 -12.49477 -12.34524 -12.23427 -11.90491 -11.82203 -11.64723 -11.53793 -11.32577 -11.17028 -11.15584 -10.92323 -10.87615 -10.49647 -10.29101 -10.28112 -10.09430 -9.58655 -9.33644 -8.82507 -8.23762 -7.84531 -6.97494 -6.40912 -4.66764 2.02349 2.33885 2.42781 2.51601 2.76944 2.99011 3.09737 3.13289 3.60548 3.89599 4.34899 4.52145 4.65550 4.72111 4.89577 5.01523 5.05651 5.06309 5.28987 5.36212 5.46711 5.56984 5.57314 5.67332 5.75944 5.83626 5.90706 5.93093 6.00408 6.10859 6.12435 6.38056 6.51721 6.64969 6.67459 6.75345 6.83501 7.07960 7.16318 7.45298 7.55578 7.61924 7.69171 7.97857 7.99094 8.35178 8.73888 9.09640 9.47064 10.37597 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.002985 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.415227 B = 9377.706369 C =10894.111665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 C -0.095 4.095 4 C -0.105 4.105 5 C -0.113 4.113 6 C 0.457 3.543 7 O -0.512 6.512 8 O -0.339 6.339 9 C 0.072 3.928 10 C 0.495 3.505 11 O -0.548 6.548 12 N -0.378 5.378 13 C -0.380 4.380 14 H 0.096 0.904 15 C 0.058 3.942 16 N -0.837 5.837 17 Si 0.916 3.084 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.276 1.276 21 C 0.184 3.816 22 C -0.103 4.103 23 C -0.123 4.123 24 C -0.171 4.171 25 C -0.120 4.120 26 C -0.191 4.191 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.276 0.724 39 H 0.132 0.868 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.202 -5.504 -8.737 12.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.168 4.168 3 C -0.133 4.133 4 C -0.142 4.142 5 C -0.150 4.150 6 C 0.300 3.700 7 O -0.401 6.401 8 O -0.254 6.254 9 C -0.004 4.004 10 C 0.286 3.714 11 O -0.431 6.431 12 N -0.087 5.087 13 C -0.507 4.507 14 H 0.114 0.886 15 C -0.153 4.153 16 N -0.469 5.469 17 Si 0.741 3.259 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.201 1.201 21 C 0.087 3.913 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.190 4.190 25 C -0.139 4.139 26 C -0.211 4.211 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.087 0.913 39 H 0.150 0.850 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.395 -5.364 -8.749 12.092 hybrid contribution 0.320 -0.541 1.273 1.420 sum -6.074 -5.905 -7.476 11.299 Atomic orbital electron populations 1.23856 0.95992 1.01811 1.01823 1.22960 0.96025 0.98575 0.99276 1.20787 0.98188 0.95620 0.98668 1.21383 0.97889 0.95948 0.99028 1.21395 0.96991 1.00921 0.95726 1.23726 0.79892 0.80168 0.86195 1.90665 1.66586 1.36338 1.46465 1.86479 1.49191 1.41800 1.47909 1.22564 0.92282 0.98055 0.87487 1.20258 0.80201 0.87466 0.83461 1.90217 1.66485 1.46341 1.40051 1.40798 1.35152 1.11503 1.21208 1.19457 1.49747 0.94479 0.86982 0.88597 1.25647 0.93517 0.96950 0.99140 1.70042 1.34771 1.23402 1.18640 0.86036 0.78846 0.80682 0.80385 1.18645 1.19942 1.20104 1.18239 0.92442 0.86546 0.94047 1.21026 0.96963 0.97252 0.97172 1.20778 1.00804 0.94269 0.98385 1.20814 1.03127 0.98995 0.96088 1.20873 0.98653 0.96824 0.97520 1.22793 1.02918 0.93187 1.02161 0.88585 0.88631 0.87336 0.91184 0.90636 0.90773 0.90782 0.87641 0.87621 0.88803 0.87783 0.91325 0.85024 0.87672 0.88079 0.87594 0.80839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.49 14.32 29.01 0.42 -1.07 16 2 C -0.15 -1.20 9.52 -36.02 -0.34 -1.54 16 3 C -0.10 -0.74 5.66 -27.88 -0.16 -0.90 16 4 C -0.10 -1.03 4.49 -26.73 -0.12 -1.15 16 5 C -0.11 -1.20 5.81 -27.88 -0.16 -1.37 16 6 C 0.46 7.27 7.96 36.00 0.29 7.56 16 7 O -0.51 -9.35 15.73 -18.74 -0.29 -9.64 16 8 O -0.34 -6.37 9.76 -45.88 -0.45 -6.82 16 9 C 0.07 1.48 4.77 36.01 0.17 1.66 16 10 C 0.50 11.79 7.65 -10.99 -0.08 11.71 16 11 O -0.55 -13.65 12.90 -14.05 -0.18 -13.84 16 12 N -0.38 -9.40 2.62 -58.98 -0.15 -9.56 16 13 C -0.38 -9.19 7.61 -14.93 -0.11 -9.30 16 14 H 0.10 2.21 7.85 -52.49 -0.41 1.80 16 15 C 0.06 1.39 3.49 -17.48 -0.06 1.33 16 16 N -0.84 -21.32 11.39 55.49 0.63 -20.69 16 17 Si 0.92 18.43 29.57 -169.99 -5.03 13.41 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 C 0.18 4.58 6.05 -83.69 -0.51 4.07 16 22 C -0.10 -2.45 7.87 -39.37 -0.31 -2.76 16 23 C -0.12 -2.56 10.04 -39.61 -0.40 -2.96 16 24 C -0.17 -3.35 10.04 -39.53 -0.40 -3.75 16 25 C -0.12 -2.47 10.04 -39.61 -0.40 -2.86 16 26 C -0.19 -4.51 9.06 -39.37 -0.36 -4.86 16 27 H 0.10 0.66 7.84 -52.49 -0.41 0.25 16 28 H 0.10 0.63 8.06 -52.49 -0.42 0.20 16 29 H 0.11 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.07 0.50 7.79 -51.93 -0.40 0.10 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.80 8.13 -51.93 -0.42 1.38 16 37 H 0.10 2.19 8.04 -51.93 -0.42 1.78 16 38 H 0.28 6.63 8.32 -40.82 -0.34 6.29 16 39 H 0.13 3.21 5.16 -52.48 -0.27 2.94 16 40 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.18 4.25 4.50 -56.37 -0.25 4.00 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -29.27 366.20 -8.44 -37.71 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.95 Total: 10.11 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.53 Total: -6.20 kcal Atomic # 7 Polarization: -30.73 SS G_CDS: 0.48 Total: -30.25 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.92 Total: -30.30 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.27 -8.44 -37.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748233597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.421 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds