Wall clock time and date at job start Tue Mar 31 2020 11:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50704 * 119.99908 * 2 1 4 4 C 1.53005 * 109.46557 * 125.00602 * 3 2 1 5 5 C 1.53005 * 109.46812 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47020 * 179.97438 * 5 4 3 7 7 O 1.20819 * 120.00049 * 359.97438 * 6 5 4 8 8 O 1.34229 * 119.99889 * 179.97438 * 6 5 4 9 9 C 1.45200 * 117.00073 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47457 * 179.97438 * 9 8 6 11 11 O 1.21281 * 119.99956 * 354.94807 * 10 9 8 12 12 N 1.34770 * 120.00036 * 174.93698 * 10 9 8 13 13 C 1.37139 * 120.00260 * 5.68554 * 12 10 9 14 14 H 1.07997 * 120.00129 * 55.66062 * 13 12 10 15 15 C 1.38897 * 120.00001 * 235.66731 * 13 12 10 16 16 N 1.31420 * 119.99424 * 9.24264 * 15 13 12 17 17 Si 1.86801 * 119.99846 * 189.24531 * 15 13 12 18 18 H 1.48495 * 109.47046 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.46975 * 119.99965 * 17 15 13 20 20 H 1.48494 * 109.46700 * 239.99669 * 17 15 13 21 21 C 1.39795 * 119.99710 * 185.68144 * 12 10 9 22 22 C 1.38961 * 120.07573 * 175.19461 * 21 12 10 23 23 C 1.38081 * 119.92419 * 179.97438 * 22 21 12 24 24 C 1.38311 * 120.07426 * 0.02562 * 23 22 21 25 25 C 1.38312 * 120.15706 * 359.97438 * 24 23 22 26 26 C 1.38079 * 120.07859 * 0.02562 * 25 24 23 27 27 H 1.07999 * 119.99421 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.00122 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.99985 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.46981 * 5.00590 * 3 2 1 31 31 H 1.09001 * 109.47110 * 245.00204 * 3 2 1 32 32 H 1.08994 * 109.47485 * 60.00297 * 4 3 2 33 33 H 1.09001 * 109.47086 * 299.99617 * 4 3 2 34 34 H 1.08999 * 109.47546 * 59.99484 * 5 4 3 35 35 H 1.09001 * 109.46688 * 299.99500 * 5 4 3 36 36 H 1.09005 * 109.46833 * 59.99999 * 9 8 6 37 37 H 1.08999 * 109.47188 * 300.00582 * 9 8 6 38 38 H 0.97008 * 119.99371 * 184.98307 * 16 15 13 39 39 H 1.08007 * 120.03887 * 359.70121 * 22 21 12 40 40 H 1.08002 * 119.96358 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.92028 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.95882 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.04261 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0352 1.3329 1.1816 5 6 3.7997 2.6583 1.1820 6 6 4.7563 2.6860 2.3462 7 8 4.8196 1.7428 3.0986 8 8 5.5379 3.7585 2.5472 9 6 6.4346 3.7161 3.6884 10 6 7.2268 4.9965 3.7527 11 8 7.1203 5.8205 2.8692 12 7 8.0534 5.2260 4.7921 13 6 8.2632 4.2480 5.7304 14 1 8.6131 3.2730 5.4251 15 6 8.0255 4.5115 7.0733 16 7 7.4307 5.6283 7.4284 17 14 8.5514 3.2785 8.3743 18 1 9.1943 2.1113 7.7189 19 1 9.5170 3.9197 9.3024 20 1 7.3602 2.8241 9.1356 21 6 8.6970 6.4610 4.9138 22 6 9.4703 6.7358 6.0353 23 6 10.1051 7.9565 6.1520 24 6 9.9716 8.9053 5.1545 25 6 9.2027 8.6352 4.0370 26 6 8.5651 7.4166 3.9137 27 1 -0.5399 0.9354 0.0004 28 1 -0.5400 -0.9352 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6213 1.4027 -0.9314 32 1 3.7401 0.5065 1.0920 33 1 2.4774 1.2354 2.1130 34 1 3.0946 3.4846 1.2719 35 1 4.3575 2.7562 0.2507 36 1 7.1166 2.8723 3.5834 37 1 5.8533 3.6017 4.6033 38 1 7.3295 5.8461 8.3683 39 1 9.5711 5.9971 6.8168 40 1 10.7059 8.1709 7.0235 41 1 10.4688 9.8594 5.2486 42 1 9.1010 9.3783 3.2599 43 1 7.9646 7.2065 3.0410 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748233597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:25 Heat of formation + Delta-G solvation = -76.050146 kcal Electronic energy + Delta-G solvation = -25686.904712 eV Core-core repulsion = 21890.854115 eV Total energy + Delta-G solvation = -3796.050596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.87854 -41.24204 -39.03573 -37.72759 -36.92848 -36.77856 -33.91729 -33.46932 -31.52923 -31.29128 -29.43909 -28.00570 -27.08051 -23.97993 -23.31257 -22.85527 -21.48738 -21.40734 -20.65596 -19.73276 -18.81447 -18.00821 -17.76076 -17.44683 -17.35260 -16.83455 -16.48345 -16.17850 -15.85415 -15.38176 -15.10720 -14.79922 -14.60181 -14.48924 -14.24121 -14.06536 -13.75986 -13.55360 -13.35606 -13.24869 -13.06159 -12.87114 -12.67513 -12.52862 -12.49085 -12.09608 -11.87856 -11.81365 -11.77033 -11.65815 -11.54285 -11.12360 -10.61307 -10.18209 -10.04316 -9.55149 -8.78503 -8.21403 -6.55419 0.61629 0.79823 1.14432 1.29493 1.38336 1.43183 1.50079 1.56616 1.85082 2.21704 2.77214 2.84697 3.31638 3.64838 3.78246 3.83813 4.02363 4.10253 4.21691 4.31726 4.32228 4.35795 4.36978 4.57691 4.60808 4.63940 4.67987 4.91873 4.93765 4.97739 5.07390 5.10358 5.20209 5.29616 5.33246 5.39960 5.43692 5.76972 5.80657 5.85006 5.86629 5.92955 5.98127 6.17834 6.56290 6.66126 6.89430 7.27244 7.64022 8.56619 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.002985 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.415227 B = 9377.706369 C =10894.111665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.089 4.089 4 C -0.099 4.099 5 C -0.104 4.104 6 C 0.453 3.547 7 O -0.539 6.539 8 O -0.350 6.350 9 C 0.084 3.916 10 C 0.482 3.518 11 O -0.567 6.567 12 N -0.389 5.389 13 C -0.393 4.393 14 H 0.101 0.899 15 C 0.026 3.974 16 N -0.871 5.871 17 Si 0.980 3.020 18 H -0.255 1.255 19 H -0.268 1.268 20 H -0.277 1.277 21 C 0.149 3.851 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.160 4.160 25 C -0.118 4.118 26 C -0.215 4.215 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.278 0.722 39 H 0.118 0.882 40 H 0.135 0.865 41 H 0.144 0.856 42 H 0.138 0.862 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.939 -4.960 -9.101 11.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.183 4.183 3 C -0.126 4.126 4 C -0.137 4.137 5 C -0.141 4.141 6 C 0.298 3.702 7 O -0.429 6.429 8 O -0.266 6.266 9 C 0.008 3.992 10 C 0.273 3.727 11 O -0.452 6.452 12 N -0.098 5.098 13 C -0.519 4.519 14 H 0.118 0.882 15 C -0.182 4.182 16 N -0.503 5.503 17 Si 0.802 3.198 18 H -0.179 1.179 19 H -0.193 1.193 20 H -0.203 1.203 21 C 0.053 3.947 22 C -0.144 4.144 23 C -0.142 4.142 24 C -0.179 4.179 25 C -0.137 4.137 26 C -0.234 4.234 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.136 0.864 40 H 0.153 0.847 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.130 -4.824 -9.129 12.007 hybrid contribution 0.232 -0.649 1.340 1.507 sum -5.898 -5.473 -7.789 11.198 Atomic orbital electron populations 1.24027 0.95986 1.02532 1.00978 1.23065 0.96371 0.98820 1.00050 1.20747 0.97889 0.95869 0.98113 1.21338 0.97863 0.95108 0.99393 1.21608 0.96251 1.02123 0.94147 1.24863 0.79469 0.78858 0.86985 1.90649 1.67354 1.37091 1.47809 1.86510 1.49490 1.43458 1.47093 1.22260 0.92340 0.96679 0.87937 1.20765 0.80336 0.88373 0.83179 1.90194 1.67202 1.47195 1.40619 1.41025 1.35441 1.11855 1.21484 1.19733 1.49981 0.94725 0.87472 0.88160 1.26370 0.92968 0.98266 1.00579 1.70141 1.35980 1.25205 1.19007 0.85079 0.78331 0.78663 0.77751 1.17851 1.19326 1.20295 1.18616 0.93728 0.87087 0.95223 1.21069 0.98136 0.98492 0.96722 1.21170 1.00111 0.93251 0.99701 1.21261 1.01820 1.00168 0.94674 1.21256 0.97536 0.96130 0.98745 1.22813 1.04163 0.94620 1.01833 0.87995 0.87905 0.87271 0.90275 0.89245 0.91601 0.92351 0.85618 0.85060 0.87893 0.88905 0.91255 0.86423 0.84747 0.83798 0.84426 0.82233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.69 14.32 67.78 0.97 -1.72 16 2 C -0.17 -2.42 9.52 25.65 0.24 -2.18 16 3 C -0.09 -1.21 5.66 29.85 0.17 -1.04 16 4 C -0.10 -1.84 4.49 30.60 0.14 -1.71 16 5 C -0.10 -2.07 5.81 29.85 0.17 -1.90 16 6 C 0.45 14.43 7.96 71.23 0.57 15.00 16 7 O -0.54 -20.02 15.73 21.98 0.35 -19.67 16 8 O -0.35 -13.40 9.76 -45.07 -0.44 -13.84 16 9 C 0.08 3.59 4.77 71.24 0.34 3.93 16 10 C 0.48 23.87 7.65 87.66 0.67 24.54 16 11 O -0.57 -29.37 12.90 15.71 0.20 -29.17 16 12 N -0.39 -20.06 2.62 -458.89 -1.20 -21.26 16 13 C -0.39 -19.52 7.61 84.02 0.64 -18.88 16 14 H 0.10 4.73 7.85 -2.91 -0.02 4.71 16 15 C 0.03 1.24 3.49 84.91 0.30 1.54 16 16 N -0.87 -45.28 11.39 21.65 0.25 -45.04 16 17 Si 0.98 38.00 29.57 68.60 2.03 40.03 16 18 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 19 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 21 C 0.15 7.62 6.05 38.22 0.23 7.85 16 22 C -0.12 -5.88 7.87 22.41 0.18 -5.70 16 23 C -0.12 -4.91 10.04 22.25 0.22 -4.68 16 24 C -0.16 -5.79 10.04 22.30 0.22 -5.57 16 25 C -0.12 -4.65 10.04 22.25 0.22 -4.43 16 26 C -0.21 -10.26 9.06 22.41 0.20 -10.05 16 27 H 0.10 1.24 7.84 -2.91 -0.02 1.22 16 28 H 0.10 1.21 8.06 -2.91 -0.02 1.19 16 29 H 0.11 1.54 8.06 -2.91 -0.02 1.52 16 30 H 0.08 0.95 7.79 -2.39 -0.02 0.93 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 33 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 34 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.10 4.10 8.13 -2.38 -0.02 4.08 16 37 H 0.09 4.11 8.04 -2.39 -0.02 4.09 16 38 H 0.28 13.54 8.32 -92.70 -0.77 12.77 16 39 H 0.12 5.84 5.16 -2.91 -0.01 5.83 16 40 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 41 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 42 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 43 H 0.16 8.07 4.50 -64.49 -0.29 7.78 16 Total: -1.00 -65.12 366.20 7.40 -57.72 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: 0.73 Total: 36.23 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 5.49 Total: -5.00 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: -0.96 Total: -66.30 kcal Atomic # 8 Polarization: -62.79 SS G_CDS: 0.11 Total: -62.68 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -65.12 7.40 -57.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748233597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.331 kcal (2) G-P(sol) polarization free energy of solvation -65.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds