Wall clock time and date at job start Tue Mar 31 2020 11:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46808 * 2 1 4 4 C 1.50698 * 115.54766 * 278.43965 * 3 2 1 5 5 O 1.20833 * 119.99868 * 121.70859 * 4 3 2 6 6 O 1.34227 * 120.00334 * 301.70898 * 4 3 2 7 7 C 1.45203 * 117.00139 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.47184 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00073 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00144 * 179.97438 * 8 7 6 11 11 C 1.37147 * 119.99852 * 355.14133 * 10 8 7 12 12 H 1.08000 * 120.00127 * 342.88109 * 11 10 8 13 13 C 1.38887 * 119.99675 * 162.87176 * 11 10 8 14 14 N 1.31419 * 120.00657 * 349.92486 * 13 11 10 15 15 Si 1.86805 * 119.99638 * 169.91740 * 13 11 10 16 16 H 1.48494 * 109.47037 * 90.00392 * 15 13 11 17 17 H 1.48498 * 109.47091 * 210.00653 * 15 13 11 18 18 H 1.48494 * 109.47101 * 330.00438 * 15 13 11 19 19 C 1.39785 * 120.00102 * 175.14542 * 10 8 7 20 20 C 1.38962 * 120.07889 * 100.68306 * 19 10 8 21 21 C 1.38076 * 119.92497 * 179.79311 * 20 19 10 22 22 C 1.38312 * 120.07677 * 0.46205 * 21 20 19 23 23 C 1.38307 * 120.15160 * 359.78821 * 22 21 20 24 24 C 1.38078 * 120.08469 * 359.97438 * 23 22 21 25 25 C 1.53004 * 117.49942 * 132.73590 * 3 2 1 26 26 C 1.52993 * 117.49985 * 64.11281 * 3 2 1 27 27 H 1.09005 * 109.47105 * 174.94556 * 1 2 3 28 28 H 1.09000 * 109.47508 * 294.94431 * 1 2 3 29 29 H 1.08994 * 109.47255 * 54.94650 * 1 2 3 30 30 H 1.08991 * 109.47417 * 119.99670 * 2 1 3 31 31 H 1.09004 * 109.47394 * 240.00346 * 2 1 3 32 32 H 1.09000 * 109.47106 * 299.99425 * 7 6 4 33 33 H 1.09004 * 109.47503 * 59.99347 * 7 6 4 34 34 H 0.96995 * 120.00631 * 185.01519 * 14 13 11 35 35 H 1.08002 * 120.03610 * 359.97438 * 20 19 10 36 36 H 1.08005 * 119.96357 * 180.25319 * 21 20 19 37 37 H 1.07996 * 119.92684 * 179.77239 * 22 21 20 38 38 H 1.08002 * 119.95873 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.04298 * 179.97438 * 24 23 22 40 40 H 1.08995 * 117.49445 * 359.97438 * 25 3 2 41 41 H 1.08995 * 117.49565 * 145.01935 * 25 3 2 42 42 H 1.09007 * 117.49722 * 214.98020 * 26 3 2 43 43 H 1.08998 * 117.50126 * 359.97176 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0684 2.1218 -1.3449 5 8 1.4477 3.1439 -1.5188 6 8 2.7831 1.5915 -2.3497 7 6 2.7650 2.2999 -3.6171 8 6 3.6174 1.5621 -4.6171 9 8 4.1848 0.5402 -4.2935 10 7 3.7494 2.0379 -5.8712 11 6 3.0303 3.1367 -6.2670 12 1 2.1709 3.4543 -5.6951 13 6 3.4073 3.8410 -7.4031 14 7 4.5567 3.5824 -7.9854 15 14 2.2804 5.1558 -8.1036 16 1 2.6052 6.4665 -7.4859 17 1 2.4723 5.2403 -9.5737 18 1 0.8679 4.8059 -7.8082 19 6 4.6190 1.4115 -6.7686 20 6 4.1193 0.5438 -7.7321 21 6 4.9808 -0.0700 -8.6196 22 6 6.3407 0.1706 -8.5443 23 6 6.8421 1.0296 -7.5833 24 6 5.9860 1.6507 -6.6957 25 6 3.1437 1.8017 0.9968 26 6 1.7167 2.3061 1.2209 27 1 -0.3633 -1.0237 -0.0905 28 1 -0.3634 0.4334 0.9318 29 1 -0.3633 0.5902 -0.8412 30 1 1.8933 -0.5137 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.7410 2.3591 -3.9857 33 1 3.1593 3.3064 -3.4765 34 1 4.8534 4.1225 -8.7344 35 1 3.0579 0.3519 -7.7885 36 1 4.5926 -0.7413 -9.3713 37 1 7.0127 -0.3136 -9.2374 38 1 7.9045 1.2156 -7.5276 39 1 6.3783 2.3210 -5.9452 40 1 3.5062 1.0104 1.6529 41 1 3.8907 2.5294 0.6799 42 1 1.5250 3.3657 1.0514 43 1 1.1404 1.8467 2.0240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750481148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:26 Heat of formation + Delta-G solvation = -57.090581 kcal Electronic energy + Delta-G solvation = -26530.362903 eV Core-core repulsion = 22735.134455 eV Total energy + Delta-G solvation = -3795.228448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.54588 -39.38795 -37.84272 -37.09224 -35.85587 -34.78251 -31.94209 -31.76740 -29.89425 -29.70512 -27.70150 -25.20951 -24.93190 -23.07806 -22.44631 -21.59101 -21.50038 -19.52449 -19.38162 -17.97182 -17.17232 -16.42088 -16.30048 -15.98796 -15.51803 -14.99895 -14.74874 -14.57201 -14.27356 -14.13007 -13.72157 -13.45057 -13.36367 -12.94318 -12.63149 -12.45277 -12.18839 -12.08631 -11.78077 -11.69686 -11.59587 -11.46056 -11.22593 -11.19918 -10.98991 -10.60230 -10.58605 -10.40722 -10.35916 -10.28095 -10.20531 -10.05429 -9.51168 -8.70912 -8.20468 -7.87860 -7.64255 -6.29237 -4.16299 2.32585 2.42911 2.50382 2.72080 3.03336 3.14725 3.16929 3.55897 3.57417 3.95518 4.37331 4.44531 4.62729 4.73280 4.82274 4.98992 5.03335 5.22414 5.34658 5.38049 5.46230 5.62494 5.70024 5.75701 5.79334 5.82341 5.85092 5.88250 5.91510 5.94391 6.01181 6.04398 6.18718 6.40059 6.55114 6.71456 6.78773 7.03539 7.19983 7.31746 7.44665 7.54665 7.72981 7.93007 7.98991 8.33714 8.87544 9.19710 9.62450 10.51672 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014413 B = 0.003843 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.178832 B = 7283.558311 C = 8433.832024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 C -0.132 4.132 4 C 0.495 3.505 5 O -0.509 6.509 6 O -0.326 6.326 7 C 0.071 3.929 8 C 0.466 3.534 9 O -0.574 6.574 10 N -0.408 5.408 11 C -0.360 4.360 12 H 0.103 0.897 13 C 0.048 3.952 14 N -0.846 5.846 15 Si 0.924 3.076 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.268 1.268 19 C 0.243 3.757 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.145 4.145 23 C -0.121 4.121 24 C -0.067 4.067 25 C -0.151 4.151 26 C -0.145 4.145 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.274 0.726 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 -3.453 10.168 11.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.121 4.121 3 C -0.133 4.133 4 C 0.337 3.663 5 O -0.398 6.398 6 O -0.241 6.241 7 C -0.005 4.005 8 C 0.254 3.746 9 O -0.458 6.458 10 N -0.126 5.126 11 C -0.486 4.486 12 H 0.120 0.880 13 C -0.161 4.161 14 N -0.481 5.481 15 Si 0.749 3.251 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.192 1.192 19 C 0.153 3.847 20 C -0.141 4.141 21 C -0.140 4.140 22 C -0.163 4.163 23 C -0.140 4.140 24 C -0.086 4.086 25 C -0.188 4.188 26 C -0.181 4.181 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.597 -3.607 10.004 10.947 hybrid contribution -0.628 1.221 -0.824 1.601 sum -3.224 -2.386 9.180 10.018 Atomic orbital electron populations 1.21768 0.95122 1.01842 1.02125 1.21082 0.96115 0.91087 1.03838 1.20976 1.07967 0.97864 0.86492 1.22454 0.75706 0.82473 0.85645 1.90650 1.41800 1.24170 1.83164 1.86498 1.64240 1.52849 1.20505 1.22655 1.01798 0.95776 0.80305 1.19500 0.85590 0.87120 0.82364 1.90621 1.51212 1.25538 1.78419 1.41182 1.37806 1.26344 1.07303 1.19658 1.10946 1.05852 1.12105 0.87977 1.25306 0.96237 0.98119 0.96406 1.69911 1.18065 1.37746 1.22404 0.85968 0.80282 0.80356 0.78468 1.20059 1.20517 1.19227 1.17021 0.88776 0.89790 0.89111 1.20949 0.98903 0.97829 0.96395 1.20649 0.93529 1.00776 0.99091 1.20733 0.95026 1.00921 0.99638 1.20663 0.98317 0.98523 0.96491 1.20775 0.92667 0.97046 0.98125 1.23173 0.92083 1.03671 0.99847 1.23102 0.98220 1.00344 0.96478 0.92213 0.92542 0.92645 0.90602 0.89856 0.89138 0.88635 0.91472 0.87533 0.87594 0.87758 0.87576 0.87785 0.87290 0.88071 0.87600 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.73 37.16 0.36 -1.19 16 2 C -0.08 -0.94 5.87 -26.73 -0.16 -1.09 16 3 C -0.13 -1.70 2.01 -155.66 -0.31 -2.01 16 4 C 0.49 8.55 7.24 36.00 0.26 8.81 16 5 O -0.51 -9.75 16.28 -18.76 -0.31 -10.05 16 6 O -0.33 -6.49 9.73 -45.90 -0.45 -6.93 16 7 C 0.07 1.49 4.51 36.00 0.16 1.65 16 8 C 0.47 11.38 7.67 -10.99 -0.08 11.29 16 9 O -0.57 -15.41 16.48 -14.11 -0.23 -15.64 16 10 N -0.41 -10.24 2.66 -58.98 -0.16 -10.40 16 11 C -0.36 -8.87 9.19 -14.93 -0.14 -9.01 16 12 H 0.10 2.36 6.46 -52.49 -0.34 2.03 16 13 C 0.05 1.16 5.32 -17.49 -0.09 1.07 16 14 N -0.85 -21.42 10.10 55.49 0.56 -20.86 16 15 Si 0.92 19.16 29.57 -169.99 -5.03 14.13 16 16 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 17 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 C 0.24 6.02 2.27 -83.70 -0.19 5.83 16 20 C -0.12 -2.80 9.91 -39.37 -0.39 -3.19 16 21 C -0.12 -2.46 10.04 -39.61 -0.40 -2.86 16 22 C -0.14 -2.80 10.04 -39.53 -0.40 -3.19 16 23 C -0.12 -2.48 10.04 -39.61 -0.40 -2.88 16 24 C -0.07 -1.57 8.61 -39.37 -0.34 -1.91 16 25 C -0.15 -1.57 9.88 -26.73 -0.26 -1.84 16 26 C -0.14 -1.48 9.38 -26.73 -0.25 -1.73 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.49 7.75 -51.93 -0.40 0.09 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 31 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 32 H 0.09 1.80 7.51 -51.93 -0.39 1.41 16 33 H 0.10 1.94 8.13 -51.93 -0.42 1.52 16 34 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 35 H 0.11 2.41 8.06 -52.49 -0.42 1.98 16 36 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 37 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.10 2.49 8.06 -52.49 -0.42 2.06 16 40 H 0.11 0.89 8.07 -51.93 -0.42 0.47 16 41 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.11 1.18 7.87 -51.93 -0.41 0.77 16 43 H 0.11 0.84 7.92 -51.93 -0.41 0.43 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -30.33 370.60 -8.79 -39.12 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.14 Total: 7.30 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.63 Total: -2.25 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 0.40 Total: -31.26 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.98 Total: -32.63 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.33 -8.79 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750481148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.973 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds