Wall clock time and date at job start Tue Mar 31 2020 11:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46808 * 2 1 4 4 C 1.50698 * 115.54766 * 278.43965 * 3 2 1 5 5 O 1.20833 * 119.99868 * 121.70859 * 4 3 2 6 6 O 1.34227 * 120.00334 * 301.70898 * 4 3 2 7 7 C 1.45203 * 117.00139 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.47184 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00073 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00144 * 179.97438 * 8 7 6 11 11 C 1.37147 * 119.99852 * 355.14133 * 10 8 7 12 12 H 1.08000 * 120.00127 * 342.88109 * 11 10 8 13 13 C 1.38887 * 119.99675 * 162.87176 * 11 10 8 14 14 N 1.31419 * 120.00657 * 349.92486 * 13 11 10 15 15 Si 1.86805 * 119.99638 * 169.91740 * 13 11 10 16 16 H 1.48494 * 109.47037 * 90.00392 * 15 13 11 17 17 H 1.48498 * 109.47091 * 210.00653 * 15 13 11 18 18 H 1.48494 * 109.47101 * 330.00438 * 15 13 11 19 19 C 1.39785 * 120.00102 * 175.14542 * 10 8 7 20 20 C 1.38962 * 120.07889 * 100.68306 * 19 10 8 21 21 C 1.38076 * 119.92497 * 179.79311 * 20 19 10 22 22 C 1.38312 * 120.07677 * 0.46205 * 21 20 19 23 23 C 1.38307 * 120.15160 * 359.78821 * 22 21 20 24 24 C 1.38078 * 120.08469 * 359.97438 * 23 22 21 25 25 C 1.53004 * 117.49942 * 132.73590 * 3 2 1 26 26 C 1.52993 * 117.49985 * 64.11281 * 3 2 1 27 27 H 1.09005 * 109.47105 * 174.94556 * 1 2 3 28 28 H 1.09000 * 109.47508 * 294.94431 * 1 2 3 29 29 H 1.08994 * 109.47255 * 54.94650 * 1 2 3 30 30 H 1.08991 * 109.47417 * 119.99670 * 2 1 3 31 31 H 1.09004 * 109.47394 * 240.00346 * 2 1 3 32 32 H 1.09000 * 109.47106 * 299.99425 * 7 6 4 33 33 H 1.09004 * 109.47503 * 59.99347 * 7 6 4 34 34 H 0.96995 * 120.00631 * 185.01519 * 14 13 11 35 35 H 1.08002 * 120.03610 * 359.97438 * 20 19 10 36 36 H 1.08005 * 119.96357 * 180.25319 * 21 20 19 37 37 H 1.07996 * 119.92684 * 179.77239 * 22 21 20 38 38 H 1.08002 * 119.95873 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.04298 * 179.97438 * 24 23 22 40 40 H 1.08995 * 117.49445 * 359.97438 * 25 3 2 41 41 H 1.08995 * 117.49565 * 145.01935 * 25 3 2 42 42 H 1.09007 * 117.49722 * 214.98020 * 26 3 2 43 43 H 1.08998 * 117.50126 * 359.97176 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0684 2.1218 -1.3449 5 8 1.4477 3.1439 -1.5188 6 8 2.7831 1.5915 -2.3497 7 6 2.7650 2.2999 -3.6171 8 6 3.6174 1.5621 -4.6171 9 8 4.1848 0.5402 -4.2935 10 7 3.7494 2.0379 -5.8712 11 6 3.0303 3.1367 -6.2670 12 1 2.1709 3.4543 -5.6951 13 6 3.4073 3.8410 -7.4031 14 7 4.5567 3.5824 -7.9854 15 14 2.2804 5.1558 -8.1036 16 1 2.6052 6.4665 -7.4859 17 1 2.4723 5.2403 -9.5737 18 1 0.8679 4.8059 -7.8082 19 6 4.6190 1.4115 -6.7686 20 6 4.1193 0.5438 -7.7321 21 6 4.9808 -0.0700 -8.6196 22 6 6.3407 0.1706 -8.5443 23 6 6.8421 1.0296 -7.5833 24 6 5.9860 1.6507 -6.6957 25 6 3.1437 1.8017 0.9968 26 6 1.7167 2.3061 1.2209 27 1 -0.3633 -1.0237 -0.0905 28 1 -0.3634 0.4334 0.9318 29 1 -0.3633 0.5902 -0.8412 30 1 1.8933 -0.5137 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.7410 2.3591 -3.9857 33 1 3.1593 3.3064 -3.4765 34 1 4.8534 4.1225 -8.7344 35 1 3.0579 0.3519 -7.7885 36 1 4.5926 -0.7413 -9.3713 37 1 7.0127 -0.3136 -9.2374 38 1 7.9045 1.2156 -7.5276 39 1 6.3783 2.3210 -5.9452 40 1 3.5062 1.0104 1.6529 41 1 3.8907 2.5294 0.6799 42 1 1.5250 3.3657 1.0514 43 1 1.1404 1.8467 2.0240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750481148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:25 Heat of formation + Delta-G solvation = -70.888596 kcal Electronic energy + Delta-G solvation = -26530.961230 eV Core-core repulsion = 22735.134455 eV Total energy + Delta-G solvation = -3795.826775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.96008 -41.14550 -39.23842 -38.53236 -37.34804 -36.65647 -33.67554 -32.77166 -31.57540 -31.41587 -29.35321 -26.96739 -26.18851 -24.15485 -23.42809 -23.23397 -23.07226 -21.28823 -20.77544 -19.72750 -18.50021 -17.99546 -17.81945 -17.45945 -17.26529 -16.59335 -16.35668 -16.15921 -15.70004 -15.50138 -15.03491 -14.85042 -14.61879 -14.38203 -14.11355 -13.97360 -13.80273 -13.46876 -13.32823 -13.18383 -12.93644 -12.76190 -12.66430 -12.50517 -12.27094 -12.09069 -12.07233 -12.02346 -11.88458 -11.58243 -11.35194 -11.31516 -11.04346 -10.63246 -10.07662 -9.58240 -9.39207 -8.14012 -6.10007 0.75207 0.80622 0.98040 1.28257 1.34533 1.44093 1.53855 1.71993 2.22276 2.65516 2.76702 3.01821 3.22011 3.49767 3.59514 3.78438 3.86602 3.93884 4.05940 4.14017 4.23418 4.28649 4.39117 4.39809 4.51995 4.55183 4.69306 4.74256 4.89514 4.90463 4.96003 5.05065 5.06381 5.15890 5.17842 5.26369 5.32137 5.35483 5.37762 5.61212 5.76101 5.79477 5.98755 6.19887 6.48104 6.59511 6.96159 7.30923 7.73333 8.63849 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014413 B = 0.003843 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.178832 B = 7283.558311 C = 8433.832024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.158 4.158 4 C 0.490 3.510 5 O -0.534 6.534 6 O -0.342 6.342 7 C 0.083 3.917 8 C 0.453 3.547 9 O -0.609 6.609 10 N -0.413 5.413 11 C -0.380 4.380 12 H 0.109 0.891 13 C 0.011 3.989 14 N -0.863 5.863 15 Si 0.988 3.012 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.263 1.263 19 C 0.213 3.787 20 C -0.148 4.148 21 C -0.118 4.118 22 C -0.138 4.138 23 C -0.119 4.119 24 C -0.094 4.094 25 C -0.141 4.141 26 C -0.126 4.126 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.027 0.973 30 H 0.109 0.891 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.273 0.727 35 H 0.099 0.901 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.137 0.863 39 H 0.084 0.916 40 H 0.140 0.860 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.806 -3.961 10.542 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.160 4.160 4 C 0.334 3.666 5 O -0.424 6.424 6 O -0.257 6.257 7 C 0.006 3.994 8 C 0.242 3.758 9 O -0.495 6.495 10 N -0.130 5.130 11 C -0.506 4.506 12 H 0.127 0.873 13 C -0.196 4.196 14 N -0.498 5.498 15 Si 0.811 3.189 16 H -0.196 1.196 17 H -0.204 1.204 18 H -0.187 1.187 19 C 0.123 3.877 20 C -0.168 4.168 21 C -0.137 4.137 22 C -0.156 4.156 23 C -0.138 4.138 24 C -0.114 4.114 25 C -0.178 4.178 26 C -0.163 4.163 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.046 0.954 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.155 0.845 39 H 0.102 0.898 40 H 0.158 0.842 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.617 -4.113 10.381 11.469 hybrid contribution -0.557 1.359 -0.970 1.760 sum -3.174 -2.753 9.411 10.307 Atomic orbital electron populations 1.21776 0.94534 1.02345 1.02013 1.21105 0.96618 0.89861 1.04113 1.21209 1.11241 0.99069 0.84435 1.23503 0.74410 0.82305 0.86374 1.90619 1.42699 1.25450 1.83630 1.86527 1.65244 1.53330 1.20565 1.22377 1.01202 0.95196 0.80618 1.20019 0.85866 0.87076 0.82806 1.90564 1.52873 1.27040 1.79059 1.41418 1.37543 1.26336 1.07665 1.20005 1.11459 1.06309 1.12796 0.87305 1.26098 0.97369 0.99847 0.96238 1.70072 1.19151 1.38254 1.22332 0.84994 0.78600 0.77809 0.77470 1.19604 1.20411 1.18717 1.17362 0.89329 0.91030 0.89975 1.21107 0.99225 0.98956 0.97470 1.21088 0.93823 1.00146 0.98594 1.21225 0.95288 0.99744 0.99343 1.21065 0.99527 0.97671 0.95538 1.20811 0.92938 0.98367 0.99263 1.23363 0.91839 1.04056 0.98499 1.23249 0.98354 0.99440 0.95214 0.90944 0.90473 0.95357 0.87287 0.92525 0.88632 0.88566 0.91601 0.88318 0.84089 0.83297 0.84539 0.89756 0.84186 0.89153 0.88856 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.73 71.98 0.70 -2.17 16 2 C -0.08 -1.68 5.87 30.60 0.18 -1.50 16 3 C -0.16 -3.96 2.01 -52.93 -0.11 -4.07 16 4 C 0.49 17.48 7.24 71.24 0.52 18.00 16 5 O -0.53 -21.14 16.28 21.94 0.36 -20.78 16 6 O -0.34 -14.29 9.73 -45.04 -0.44 -14.73 16 7 C 0.08 3.66 4.51 71.24 0.32 3.98 16 8 C 0.45 23.38 7.67 87.66 0.67 24.05 16 9 O -0.61 -34.51 16.48 15.76 0.26 -34.25 16 10 N -0.41 -21.67 2.66 -458.89 -1.22 -22.89 16 11 C -0.38 -19.37 9.19 84.02 0.77 -18.59 16 12 H 0.11 5.21 6.46 -2.91 -0.02 5.19 16 13 C 0.01 0.53 5.32 84.91 0.45 0.98 16 14 N -0.86 -44.28 10.10 21.65 0.22 -44.06 16 15 Si 0.99 39.43 29.57 68.60 2.03 41.46 16 16 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 19 C 0.21 10.90 2.27 38.22 0.09 10.98 16 20 C -0.15 -6.96 9.91 22.40 0.22 -6.74 16 21 C -0.12 -4.58 10.04 22.25 0.22 -4.35 16 22 C -0.14 -4.96 10.04 22.30 0.22 -4.73 16 23 C -0.12 -4.76 10.04 22.25 0.22 -4.54 16 24 C -0.09 -4.57 8.61 22.41 0.19 -4.38 16 25 C -0.14 -2.67 9.88 30.60 0.30 -2.36 16 26 C -0.13 -2.30 9.38 30.59 0.29 -2.02 16 27 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.08 1.14 7.75 -2.39 -0.02 1.13 16 29 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.11 1.57 7.93 -2.39 -0.02 1.55 16 31 H 0.06 1.49 8.09 -2.38 -0.02 1.47 16 32 H 0.10 4.04 7.51 -2.39 -0.02 4.02 16 33 H 0.10 4.16 8.13 -2.38 -0.02 4.14 16 34 H 0.27 13.38 8.32 -92.71 -0.77 12.61 16 35 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 36 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 37 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 38 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 39 H 0.08 4.27 8.06 -2.91 -0.02 4.25 16 40 H 0.14 1.78 8.07 -2.39 -0.02 1.76 16 41 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.09 1.97 7.87 -2.38 -0.02 1.96 16 43 H 0.14 1.63 7.92 -2.39 -0.02 1.61 16 Total: -1.00 -69.05 370.60 7.48 -61.57 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 1.00 Total: 31.16 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 5.27 Total: 2.54 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: -1.00 Total: -66.96 kcal Atomic # 8 Polarization: -69.95 SS G_CDS: 0.18 Total: -69.77 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -69.05 7.48 -61.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750481148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.316 kcal (2) G-P(sol) polarization free energy of solvation -69.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds