Wall clock time and date at job start Tue Mar 31 2020 12:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33082 * 120.00149 * 2 1 4 4 C 1.50706 * 119.99653 * 179.97438 * 3 2 1 5 5 C 1.46950 * 120.00155 * 359.97438 * 3 2 1 6 6 O 1.21535 * 119.99692 * 0.02562 * 5 3 2 7 7 O 1.34799 * 120.00182 * 180.02562 * 5 3 2 8 8 C 1.45189 * 116.99975 * 179.97438 * 7 5 3 9 9 C 1.50703 * 109.46908 * 180.02562 * 8 7 5 10 10 O 1.21282 * 120.00167 * 5.12696 * 9 8 7 11 11 N 1.34780 * 120.00001 * 185.12754 * 9 8 7 12 12 C 1.46497 * 120.00374 * 185.22010 * 11 9 8 13 13 C 1.50697 * 109.47163 * 89.99315 * 12 11 9 14 14 H 1.08001 * 120.00151 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00120 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99652 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00214 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47507 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47442 * 119.99976 * 17 15 13 20 20 H 1.48501 * 109.47499 * 239.99989 * 17 15 13 21 21 C 1.39931 * 119.99856 * 5.21489 * 11 9 8 22 22 C 1.38872 * 120.06979 * 292.47798 * 21 11 9 23 23 C 1.38111 * 119.92647 * 179.75054 * 22 21 11 24 24 C 1.38289 * 120.06932 * 0.52481 * 23 22 21 25 25 C 1.38277 * 120.14000 * 359.74905 * 24 23 22 26 26 C 1.38113 * 120.07154 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47148 * 300.00425 * 1 2 3 28 28 H 1.08994 * 109.47456 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46860 * 59.99956 * 1 2 3 30 30 H 1.08008 * 119.99574 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47107 * 89.99832 * 4 3 2 32 32 H 1.09000 * 109.46531 * 209.99894 * 4 3 2 33 33 H 1.08993 * 109.47285 * 329.99471 * 4 3 2 34 34 H 1.09006 * 109.47213 * 299.99897 * 8 7 5 35 35 H 1.09000 * 109.47489 * 60.00200 * 8 7 5 36 36 H 1.08998 * 109.47570 * 209.99750 * 12 11 9 37 37 H 1.09005 * 109.46523 * 329.99945 * 12 11 9 38 38 H 0.96996 * 119.99927 * 179.97438 * 16 15 13 39 39 H 1.07995 * 120.03963 * 0.02562 * 22 21 11 40 40 H 1.07999 * 119.96871 * 180.27341 * 23 22 21 41 41 H 1.08005 * 119.92619 * 179.72802 * 24 23 22 42 42 H 1.08002 * 119.96166 * 180.02562 * 25 24 23 43 43 H 1.07995 * 120.03228 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1525 0.0000 4 6 3.6795 1.1524 0.0006 5 6 1.4378 2.4252 -0.0006 6 8 0.2224 2.4252 -0.0006 7 8 2.1118 3.5926 -0.0011 8 6 1.3211 4.8102 -0.0022 9 6 2.2391 6.0053 -0.0033 10 8 3.4382 5.8489 -0.0970 11 7 1.7278 7.2481 0.0999 12 6 2.6071 8.4140 -0.0159 13 6 2.6893 8.8399 -1.4591 14 1 2.1409 8.2967 -2.2145 15 6 3.4645 9.9231 -1.8152 16 7 4.1326 10.5843 -0.8954 17 14 3.5658 10.4515 -3.6040 18 1 2.7270 9.5505 -4.4346 19 1 3.0741 11.8464 -3.7367 20 1 4.9762 10.3781 -4.0628 21 6 0.3568 7.4246 0.3175 22 6 -0.5550 7.0772 -0.6707 23 6 -1.9078 7.2479 -0.4508 24 6 -2.3539 7.7743 0.7477 25 6 -1.4482 8.1265 1.7314 26 6 -0.0945 7.9529 1.5198 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 2.0470 -0.9354 0.0004 31 1 4.0433 1.1521 -1.0270 32 1 4.0426 2.0425 0.5144 33 1 4.0426 0.2626 0.5148 34 1 0.6926 4.8345 -0.8925 35 1 0.6919 4.8358 0.8875 36 1 2.2062 9.2324 0.5822 37 1 3.6030 8.1550 0.3437 38 1 4.6783 11.3461 -1.1459 39 1 -0.2070 6.6698 -1.6083 40 1 -2.6177 6.9738 -1.2171 41 1 -3.4121 7.9108 0.9155 42 1 -1.7999 8.5369 2.6664 43 1 0.6124 8.2278 2.2887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750900245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:45 Heat of formation + Delta-G solvation = -71.745173 kcal Electronic energy + Delta-G solvation = -26331.006103 eV Core-core repulsion = 22535.142185 eV Total energy + Delta-G solvation = -3795.863919 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.62663 -39.81231 -38.17547 -36.71633 -35.17235 -34.88884 -32.76481 -30.82242 -30.47859 -29.52752 -28.95184 -26.72630 -25.14854 -23.55038 -22.76842 -22.37407 -22.05136 -19.63923 -19.13553 -17.41817 -17.09445 -16.69702 -16.43173 -16.02847 -15.59550 -15.25579 -15.01388 -14.50458 -14.37387 -14.26875 -14.14225 -13.49013 -13.27718 -13.19324 -12.93613 -12.86199 -12.62815 -12.42663 -12.30847 -12.15083 -12.12447 -11.65309 -11.51214 -11.25949 -11.09797 -10.87134 -10.69708 -10.60199 -10.22184 -10.16275 -9.78280 -9.43854 -9.30867 -8.73254 -8.63073 -8.48457 -7.77274 -6.10817 -4.15747 1.00602 1.50574 1.60379 2.50556 2.83232 3.09316 3.27437 3.34845 3.39060 3.74826 3.97964 4.40071 4.59900 4.64725 4.77736 4.96233 5.10847 5.14469 5.19218 5.24739 5.27709 5.29839 5.34630 5.51121 5.55691 5.63600 5.63801 5.77582 5.78245 5.96583 5.96922 6.12376 6.21633 6.29339 6.48272 6.56260 6.69192 6.73365 6.89659 7.14197 7.27305 7.38204 7.73978 7.84610 8.11719 8.19283 8.70869 8.89227 9.49034 10.97633 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011236 B = 0.004095 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.297189 B = 6835.462681 C = 8437.868504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.165 4.165 4 C -0.113 4.113 5 C 0.495 3.505 6 O -0.508 6.508 7 O -0.325 6.325 8 C 0.052 3.948 9 C 0.517 3.483 10 O -0.505 6.505 11 N -0.556 5.556 12 C 0.249 3.751 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.900 3.100 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.154 3.846 22 C -0.127 4.127 23 C -0.107 4.107 24 C -0.132 4.132 25 C -0.109 4.109 26 C -0.122 4.122 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.134 0.866 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.051 0.949 38 H 0.264 0.736 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.522 -16.089 4.341 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.084 4.084 3 C -0.166 4.166 4 C -0.170 4.170 5 C 0.342 3.658 6 O -0.399 6.399 7 O -0.240 6.240 8 C -0.026 4.026 9 C 0.303 3.697 10 O -0.379 6.379 11 N -0.286 5.286 12 C 0.131 3.869 13 C -0.568 4.568 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.727 3.273 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.062 3.938 22 C -0.146 4.146 23 C -0.126 4.126 24 C -0.150 4.150 25 C -0.127 4.127 26 C -0.142 4.142 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.152 0.848 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.012 -15.960 4.312 19.328 hybrid contribution -0.074 0.651 -1.084 1.266 sum -10.086 -15.310 3.228 18.616 Atomic orbital electron populations 1.21121 0.91645 1.01476 1.04210 1.23754 0.97284 0.96590 0.90787 1.20827 0.97190 0.89620 1.08933 1.20756 0.89613 1.03537 1.03073 1.21478 0.86158 0.84946 0.73238 1.90840 1.14761 1.88129 1.46165 1.86634 1.40037 1.13763 1.83607 1.22904 0.93311 0.81776 1.04571 1.19738 0.88697 0.83306 0.77978 1.90722 1.14984 1.84932 1.47277 1.45876 1.05847 1.07209 1.69627 1.19506 0.89523 0.80033 0.97790 1.21400 1.29026 1.13562 0.92816 0.92261 1.24909 0.95010 0.96080 0.97904 1.69934 1.29955 1.20290 1.32938 0.86409 0.78000 0.78319 0.84532 1.19751 1.20869 1.20762 1.17793 0.84022 0.98885 0.93096 1.21385 0.93194 1.01857 0.98193 1.20980 0.94933 0.99313 0.97362 1.21087 0.99399 1.00362 0.94156 1.20981 0.92610 0.99867 0.99271 1.21300 0.96002 1.00443 0.96428 0.89943 0.92529 0.89950 0.84818 0.90856 0.90165 0.91407 0.88365 0.88797 0.94331 0.93086 0.92628 0.85888 0.85995 0.86255 0.85950 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 8.45 36.01 0.30 -0.89 16 2 C -0.07 -0.59 9.95 -36.10 -0.36 -0.95 16 3 C -0.16 -1.91 6.00 -102.89 -0.62 -2.52 16 4 C -0.11 -1.16 9.85 36.01 0.35 -0.80 16 5 C 0.50 7.39 7.85 34.26 0.27 7.66 16 6 O -0.51 -7.94 12.86 -19.29 -0.25 -8.19 16 7 O -0.33 -5.63 9.03 -47.43 -0.43 -6.06 16 8 C 0.05 0.90 4.47 36.01 0.16 1.06 16 9 C 0.52 11.13 7.65 -10.98 -0.08 11.05 16 10 O -0.51 -12.83 16.06 -14.05 -0.23 -13.06 16 11 N -0.56 -12.05 2.51 -114.74 -0.29 -12.34 16 12 C 0.25 6.47 5.15 -5.20 -0.03 6.45 16 13 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 14 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 15 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 17 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.15 2.81 4.43 -83.69 -0.37 2.44 16 22 C -0.13 -2.06 8.45 -39.39 -0.33 -2.39 16 23 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 24 C -0.13 -1.63 10.04 -39.55 -0.40 -2.03 16 25 C -0.11 -1.43 10.04 -39.61 -0.40 -1.83 16 26 C -0.12 -1.96 9.66 -39.39 -0.38 -2.34 16 27 H 0.08 0.87 7.22 -51.93 -0.37 0.50 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.88 7.22 -51.93 -0.37 0.51 16 30 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.97 7.68 -51.93 -0.40 0.57 16 33 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 34 H 0.10 1.58 6.89 -51.93 -0.36 1.23 16 35 H 0.09 1.48 7.86 -51.93 -0.41 1.07 16 36 H 0.04 1.02 7.84 -51.93 -0.41 0.61 16 37 H 0.05 1.47 7.36 -51.93 -0.38 1.09 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 39 H 0.12 1.99 7.55 -52.49 -0.40 1.59 16 40 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 43 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -33.35 371.85 -8.59 -41.94 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.02 Total: 1.32 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.70 Total: -0.50 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.45 Total: -37.87 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.90 Total: -27.30 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.35 -8.59 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750900245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.806 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds