Wall clock time and date at job start Tue Mar 31 2020 12:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33082 * 120.00149 * 2 1 4 4 C 1.50706 * 119.99653 * 179.97438 * 3 2 1 5 5 C 1.46950 * 120.00155 * 359.97438 * 3 2 1 6 6 O 1.21535 * 119.99692 * 0.02562 * 5 3 2 7 7 O 1.34799 * 120.00182 * 180.02562 * 5 3 2 8 8 C 1.45189 * 116.99975 * 179.97438 * 7 5 3 9 9 C 1.50703 * 109.46908 * 180.02562 * 8 7 5 10 10 O 1.21282 * 120.00167 * 5.12696 * 9 8 7 11 11 N 1.34780 * 120.00001 * 185.12754 * 9 8 7 12 12 C 1.46497 * 120.00374 * 185.22010 * 11 9 8 13 13 C 1.50697 * 109.47163 * 89.99315 * 12 11 9 14 14 H 1.08001 * 120.00151 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00120 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99652 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00214 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47507 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47442 * 119.99976 * 17 15 13 20 20 H 1.48501 * 109.47499 * 239.99989 * 17 15 13 21 21 C 1.39931 * 119.99856 * 5.21489 * 11 9 8 22 22 C 1.38872 * 120.06979 * 292.47798 * 21 11 9 23 23 C 1.38111 * 119.92647 * 179.75054 * 22 21 11 24 24 C 1.38289 * 120.06932 * 0.52481 * 23 22 21 25 25 C 1.38277 * 120.14000 * 359.74905 * 24 23 22 26 26 C 1.38113 * 120.07154 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47148 * 300.00425 * 1 2 3 28 28 H 1.08994 * 109.47456 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46860 * 59.99956 * 1 2 3 30 30 H 1.08008 * 119.99574 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47107 * 89.99832 * 4 3 2 32 32 H 1.09000 * 109.46531 * 209.99894 * 4 3 2 33 33 H 1.08993 * 109.47285 * 329.99471 * 4 3 2 34 34 H 1.09006 * 109.47213 * 299.99897 * 8 7 5 35 35 H 1.09000 * 109.47489 * 60.00200 * 8 7 5 36 36 H 1.08998 * 109.47570 * 209.99750 * 12 11 9 37 37 H 1.09005 * 109.46523 * 329.99945 * 12 11 9 38 38 H 0.96996 * 119.99927 * 179.97438 * 16 15 13 39 39 H 1.07995 * 120.03963 * 0.02562 * 22 21 11 40 40 H 1.07999 * 119.96871 * 180.27341 * 23 22 21 41 41 H 1.08005 * 119.92619 * 179.72802 * 24 23 22 42 42 H 1.08002 * 119.96166 * 180.02562 * 25 24 23 43 43 H 1.07995 * 120.03228 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1525 0.0000 4 6 3.6795 1.1524 0.0006 5 6 1.4378 2.4252 -0.0006 6 8 0.2224 2.4252 -0.0006 7 8 2.1118 3.5926 -0.0011 8 6 1.3211 4.8102 -0.0022 9 6 2.2391 6.0053 -0.0033 10 8 3.4382 5.8489 -0.0970 11 7 1.7278 7.2481 0.0999 12 6 2.6071 8.4140 -0.0159 13 6 2.6893 8.8399 -1.4591 14 1 2.1409 8.2967 -2.2145 15 6 3.4645 9.9231 -1.8152 16 7 4.1326 10.5843 -0.8954 17 14 3.5658 10.4515 -3.6040 18 1 2.7270 9.5505 -4.4346 19 1 3.0741 11.8464 -3.7367 20 1 4.9762 10.3781 -4.0628 21 6 0.3568 7.4246 0.3175 22 6 -0.5550 7.0772 -0.6707 23 6 -1.9078 7.2479 -0.4508 24 6 -2.3539 7.7743 0.7477 25 6 -1.4482 8.1265 1.7314 26 6 -0.0945 7.9529 1.5198 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 2.0470 -0.9354 0.0004 31 1 4.0433 1.1521 -1.0270 32 1 4.0426 2.0425 0.5144 33 1 4.0426 0.2626 0.5148 34 1 0.6926 4.8345 -0.8925 35 1 0.6919 4.8358 0.8875 36 1 2.2062 9.2324 0.5822 37 1 3.6030 8.1550 0.3437 38 1 4.6783 11.3461 -1.1459 39 1 -0.2070 6.6698 -1.6083 40 1 -2.6177 6.9738 -1.2171 41 1 -3.4121 7.9108 0.9155 42 1 -1.7999 8.5369 2.6664 43 1 0.6124 8.2278 2.2887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750900245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:44 Heat of formation + Delta-G solvation = -89.582905 kcal Electronic energy + Delta-G solvation = -26331.779606 eV Core-core repulsion = 22535.142185 eV Total energy + Delta-G solvation = -3796.637421 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.94128 -41.20251 -39.57345 -37.94650 -36.59648 -36.09605 -34.85810 -32.02137 -31.44164 -31.00264 -30.30452 -28.55202 -26.08806 -25.10806 -24.17648 -23.57030 -23.38581 -20.88039 -20.49489 -18.88428 -18.62775 -18.40528 -17.88848 -17.32822 -17.14873 -16.58501 -16.50433 -16.00970 -15.53733 -15.44237 -15.23037 -14.78171 -14.64974 -14.36512 -14.30349 -14.06721 -13.78530 -13.66989 -13.59977 -13.45562 -13.40201 -13.07975 -12.89755 -12.70835 -12.49224 -12.43057 -12.21984 -12.17080 -11.93460 -11.75515 -11.27019 -11.07887 -10.70454 -10.19768 -10.12263 -9.87545 -9.33529 -8.28716 -6.43686 0.09951 0.29335 0.45853 1.21321 1.33376 1.35656 1.40448 1.49133 1.80366 2.23953 2.37532 2.81444 3.01688 3.27909 3.56968 3.84599 3.85214 3.87880 4.05563 4.07981 4.28695 4.29301 4.48185 4.55674 4.60314 4.67246 4.75766 4.80098 4.85363 4.94373 5.02635 5.04941 5.10954 5.13881 5.20307 5.33261 5.44093 5.49344 5.58471 5.60603 5.60907 5.68409 5.94655 6.00855 6.46445 6.61332 6.62853 7.04474 7.27262 8.79352 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011236 B = 0.004095 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.297189 B = 6835.462681 C = 8437.868504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.028 4.028 3 C -0.198 4.198 4 C -0.107 4.107 5 C 0.488 3.512 6 O -0.522 6.522 7 O -0.347 6.347 8 C 0.070 3.930 9 C 0.510 3.490 10 O -0.559 6.559 11 N -0.555 5.555 12 C 0.266 3.734 13 C -0.547 4.547 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.925 5.925 17 Si 0.969 3.031 18 H -0.268 1.268 19 H -0.268 1.268 20 H -0.278 1.278 21 C 0.113 3.887 22 C -0.139 4.139 23 C -0.102 4.102 24 C -0.117 4.117 25 C -0.102 4.102 26 C -0.137 4.137 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.177 0.823 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.027 0.973 37 H 0.009 0.991 38 H 0.269 0.731 39 H 0.115 0.885 40 H 0.154 0.846 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 -17.681 3.739 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.046 4.046 3 C -0.199 4.199 4 C -0.164 4.164 5 C 0.336 3.664 6 O -0.413 6.413 7 O -0.263 6.263 8 C -0.007 4.007 9 C 0.298 3.702 10 O -0.437 6.437 11 N -0.283 5.283 12 C 0.147 3.853 13 C -0.585 4.585 14 H 0.071 0.929 15 C -0.188 4.188 16 N -0.564 5.564 17 Si 0.793 3.207 18 H -0.192 1.192 19 H -0.193 1.193 20 H -0.203 1.203 21 C 0.023 3.977 22 C -0.159 4.159 23 C -0.121 4.121 24 C -0.134 4.134 25 C -0.120 4.120 26 C -0.157 4.157 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.194 0.806 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.045 0.955 37 H 0.027 0.973 38 H 0.078 0.922 39 H 0.133 0.867 40 H 0.172 0.828 41 H 0.179 0.821 42 H 0.173 0.827 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.035 -17.561 3.725 22.185 hybrid contribution 0.697 1.078 -0.815 1.520 sum -12.338 -16.483 2.911 20.794 Atomic orbital electron populations 1.21165 0.91904 1.03092 1.02728 1.24216 0.97229 0.97102 0.86060 1.20935 0.97762 0.88628 1.12624 1.20718 0.88926 1.03642 1.03126 1.22227 0.86419 0.85052 0.72685 1.90819 1.15189 1.88143 1.47198 1.86652 1.40979 1.14414 1.84233 1.22619 0.91896 0.80451 1.05710 1.20487 0.88652 0.84379 0.76663 1.90675 1.17303 1.85817 1.49894 1.45664 1.07304 1.06137 1.69204 1.18935 0.88462 0.81267 0.96674 1.21632 1.29398 1.13964 0.93508 0.92851 1.25834 0.94348 0.95966 1.02628 1.70046 1.30426 1.20753 1.35177 0.85339 0.78116 0.78430 0.78784 1.19197 1.19305 1.20331 1.18076 0.82202 1.02301 0.95102 1.21429 0.94427 1.02541 0.97484 1.21365 0.93850 0.98163 0.98691 1.21601 1.01322 0.97679 0.92834 1.21369 0.91100 0.98684 1.00886 1.21401 0.97671 1.00953 0.95674 0.91324 0.89339 0.91466 0.80557 0.90917 0.93079 0.88245 0.87187 0.87277 0.95469 0.97256 0.92174 0.86732 0.82843 0.82059 0.82675 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.45 71.24 0.60 -1.54 16 2 C -0.03 -0.42 9.95 24.53 0.24 -0.18 16 3 C -0.20 -4.42 6.00 -18.73 -0.11 -4.53 16 4 C -0.11 -2.15 9.85 71.24 0.70 -1.45 16 5 C 0.49 14.82 7.85 70.10 0.55 15.37 16 6 O -0.52 -16.32 12.86 19.72 0.25 -16.07 16 7 O -0.35 -12.66 9.03 -50.73 -0.46 -13.12 16 8 C 0.07 2.56 4.47 71.24 0.32 2.88 16 9 C 0.51 23.66 7.65 87.66 0.67 24.33 16 10 O -0.56 -30.88 16.06 15.71 0.25 -30.63 16 11 N -0.55 -25.76 2.51 -635.31 -1.59 -27.36 16 12 C 0.27 14.91 5.15 85.63 0.44 15.35 16 13 C -0.55 -32.33 9.39 25.60 0.24 -32.09 16 14 H 0.05 3.14 7.81 -2.91 -0.02 3.11 16 15 C 0.01 0.69 5.46 84.66 0.46 1.15 16 16 N -0.92 -56.30 13.29 21.45 0.28 -56.02 16 17 Si 0.97 45.49 29.54 68.60 2.03 47.51 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 21 C 0.11 4.28 4.43 38.15 0.17 4.45 16 22 C -0.14 -4.50 8.45 22.39 0.19 -4.31 16 23 C -0.10 -2.46 10.04 22.25 0.22 -2.23 16 24 C -0.12 -2.42 10.04 22.29 0.22 -2.19 16 25 C -0.10 -2.43 10.04 22.25 0.22 -2.20 16 26 C -0.14 -4.45 9.66 22.39 0.22 -4.23 16 27 H 0.07 1.35 7.22 -2.39 -0.02 1.34 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 1.34 7.22 -2.39 -0.02 1.33 16 30 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.31 7.68 -2.39 -0.02 1.29 16 33 H 0.10 1.29 8.07 -2.39 -0.02 1.27 16 34 H 0.11 3.69 6.89 -2.38 -0.02 3.68 16 35 H 0.11 3.58 7.86 -2.39 -0.02 3.56 16 36 H 0.03 1.56 7.84 -2.39 -0.02 1.54 16 37 H 0.01 0.59 7.36 -2.38 -0.02 0.58 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.11 3.79 7.55 -2.91 -0.02 3.77 16 40 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 41 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 43 H 0.12 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -78.47 371.85 7.14 -71.34 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 1.01 Total: 15.79 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.36 Total: 8.55 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -1.31 Total: -83.37 kcal Atomic # 8 Polarization: -59.86 SS G_CDS: 0.05 Total: -59.82 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -78.47 7.14 -71.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750900245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.246 kcal (2) G-P(sol) polarization free energy of solvation -78.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds