Wall clock time and date at job start Tue Mar 31 2020 12:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33079 * 119.99853 * 2 1 4 4 C 1.50707 * 120.00258 * 359.97438 * 3 2 1 5 5 C 1.46958 * 120.00104 * 179.97438 * 3 2 1 6 6 O 1.21534 * 119.99431 * 359.97438 * 5 3 2 7 7 O 1.34797 * 119.99928 * 179.97438 * 5 3 2 8 8 C 1.45200 * 116.99489 * 179.97438 * 7 5 3 9 9 C 1.50707 * 109.46740 * 180.02562 * 8 7 5 10 10 O 1.21285 * 120.00045 * 354.73123 * 9 8 7 11 11 N 1.34774 * 119.99689 * 174.72993 * 9 8 7 12 12 C 1.46504 * 119.99858 * 184.43211 * 11 9 8 13 13 C 1.50699 * 109.46734 * 269.99930 * 12 11 9 14 14 H 1.08005 * 120.00470 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99917 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99941 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99915 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47023 * 89.99977 * 17 15 13 19 19 H 1.48497 * 109.46701 * 210.00224 * 17 15 13 20 20 H 1.48500 * 109.46896 * 329.99969 * 17 15 13 21 21 C 1.39930 * 120.00453 * 4.43062 * 11 9 8 22 22 C 1.38872 * 120.06914 * 66.70882 * 21 11 9 23 23 C 1.38109 * 119.92865 * 179.97438 * 22 21 11 24 24 C 1.38289 * 120.07137 * 359.97438 * 23 22 21 25 25 C 1.38281 * 120.13806 * 0.04960 * 24 23 22 26 26 C 1.38114 * 120.07160 * 359.94992 * 25 24 23 27 27 H 1.09000 * 109.47214 * 300.00534 * 1 2 3 28 28 H 1.08999 * 109.46933 * 60.00578 * 1 2 3 29 29 H 1.09002 * 109.47098 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99862 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46938 * 270.00503 * 4 3 2 32 32 H 1.09000 * 109.46620 * 30.00038 * 4 3 2 33 33 H 1.08998 * 109.46907 * 150.00598 * 4 3 2 34 34 H 1.08998 * 109.47229 * 60.00340 * 8 7 5 35 35 H 1.08998 * 109.47256 * 299.99802 * 8 7 5 36 36 H 1.08994 * 109.47395 * 29.99573 * 12 11 9 37 37 H 1.08994 * 109.47195 * 150.00147 * 12 11 9 38 38 H 0.97001 * 119.99539 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.03703 * 359.70435 * 22 21 11 40 40 H 1.07998 * 119.96629 * 179.97438 * 23 22 21 41 41 H 1.07995 * 119.92735 * 180.02562 * 24 23 22 42 42 H 1.08006 * 119.96103 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.03326 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1525 0.0000 4 6 1.4189 2.4577 -0.0006 5 6 3.6420 1.1526 0.0006 6 8 4.2496 0.1000 0.0015 7 8 4.3159 2.3200 0.0000 8 6 5.7659 2.2440 0.0012 9 6 6.3419 3.6366 0.0011 10 8 5.6072 4.5967 -0.0964 11 7 7.6734 3.8151 0.1093 12 6 8.2254 5.1686 0.2069 13 6 8.5219 5.6910 -1.1752 14 1 8.3197 5.0762 -2.0398 15 6 9.0522 6.9536 -1.3359 16 7 9.3104 7.4097 -2.5421 17 14 9.4025 8.0168 0.1596 18 1 10.7876 7.7654 0.6321 19 1 9.2563 9.4486 -0.2060 20 1 8.4419 7.6815 1.2412 21 6 8.5285 2.7077 0.1284 22 6 8.6627 1.9126 -1.0022 23 6 9.5080 0.8206 -0.9803 24 6 10.2208 0.5189 0.1657 25 6 10.0890 1.3085 1.2932 26 6 9.2454 2.4019 1.2778 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.0470 -0.9353 0.0004 31 1 1.2376 2.7720 -1.0284 32 1 0.4663 2.3274 0.5129 33 1 2.0078 3.2174 0.5132 34 1 6.1025 1.7111 -0.8880 35 1 6.1012 1.7126 0.8920 36 1 7.5019 5.8218 0.6947 37 1 9.1452 5.1446 0.7913 38 1 9.6839 8.2978 -2.6551 39 1 8.1033 2.1453 -1.8963 40 1 9.6124 0.2015 -1.8591 41 1 10.8814 -0.3353 0.1801 42 1 10.6468 1.0700 2.1869 43 1 9.1432 3.0184 2.1586 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750900269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:48 Heat of formation + Delta-G solvation = -69.887366 kcal Electronic energy + Delta-G solvation = -26145.667532 eV Core-core repulsion = 22349.884174 eV Total energy + Delta-G solvation = -3795.783358 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.62583 -39.85721 -38.22640 -36.68074 -35.70714 -34.99017 -32.67436 -30.85280 -30.19001 -29.72094 -28.92161 -27.12376 -26.35711 -23.20780 -22.61824 -22.32450 -21.82796 -19.31977 -18.82841 -17.43971 -17.42604 -17.03047 -16.57813 -16.44430 -16.00286 -15.51623 -15.11054 -14.50970 -14.33565 -14.15464 -13.89235 -13.77075 -13.49872 -13.23161 -12.92740 -12.83215 -12.65804 -12.50065 -12.40549 -12.34987 -12.14499 -11.84882 -11.56191 -11.42271 -11.19567 -10.91255 -10.68140 -10.61895 -10.56331 -10.24035 -9.62410 -9.51979 -9.37143 -8.77262 -8.71860 -8.62918 -7.82430 -6.12208 -4.11750 0.94256 1.44942 1.56312 2.41265 2.81707 3.01396 3.24629 3.32337 3.34977 3.63439 3.93261 4.35808 4.55295 4.66182 4.70363 4.84940 5.02663 5.07970 5.11273 5.16061 5.20267 5.20729 5.23492 5.28642 5.48404 5.58706 5.59160 5.61067 5.73126 5.81734 5.90418 6.09320 6.17236 6.25273 6.38124 6.48036 6.57741 6.65283 6.66174 6.83582 6.98494 7.20698 7.51948 7.67915 8.02364 8.38707 8.66548 8.90325 9.46105 11.01033 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011720 B = 0.003932 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.436862 B = 7118.744959 C = 8862.537676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.070 4.070 3 C -0.161 4.161 4 C -0.117 4.117 5 C 0.501 3.499 6 O -0.514 6.514 7 O -0.324 6.324 8 C 0.052 3.948 9 C 0.517 3.483 10 O -0.500 6.500 11 N -0.551 5.551 12 C 0.221 3.779 13 C -0.530 4.530 14 H 0.076 0.924 15 C 0.075 3.925 16 N -0.894 5.894 17 Si 0.873 3.127 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.263 1.263 21 C 0.151 3.849 22 C -0.121 4.121 23 C -0.106 4.106 24 C -0.129 4.129 25 C -0.109 4.109 26 C -0.125 4.125 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.032 0.968 38 H 0.265 0.735 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.832 -16.696 7.584 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.088 4.088 3 C -0.162 4.162 4 C -0.173 4.173 5 C 0.347 3.653 6 O -0.405 6.405 7 O -0.238 6.238 8 C -0.025 4.025 9 C 0.303 3.697 10 O -0.374 6.374 11 N -0.280 5.280 12 C 0.102 3.898 13 C -0.568 4.568 14 H 0.094 0.906 15 C -0.128 4.128 16 N -0.532 5.532 17 Si 0.699 3.301 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.188 1.188 21 C 0.059 3.941 22 C -0.141 4.141 23 C -0.124 4.124 24 C -0.148 4.148 25 C -0.128 4.128 26 C -0.145 4.145 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.146 0.854 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.990 -16.211 7.433 20.441 hybrid contribution 0.728 0.570 0.486 1.044 sum -9.263 -15.641 7.919 19.828 Atomic orbital electron populations 1.21002 0.91359 1.03248 1.03059 1.23677 0.96750 0.97437 0.90953 1.20754 0.88962 0.97818 1.08685 1.20817 0.99548 0.93807 1.03139 1.21454 0.89530 0.81596 0.72748 1.90843 1.70380 1.32707 1.46565 1.86629 1.20357 1.33326 1.83535 1.22855 0.77622 0.97220 1.04812 1.19746 0.82363 0.89620 0.77973 1.90737 1.58080 1.41948 1.46589 1.45506 1.03834 1.07221 1.71471 1.19850 0.94015 0.76995 0.98929 1.21230 1.42685 1.01301 0.91603 0.90569 1.24816 0.94851 0.97252 0.95864 1.69886 1.43763 1.18328 1.21227 0.86895 0.79106 0.80426 0.83650 1.19986 1.20759 1.18792 1.17759 0.94372 0.88628 0.93338 1.21405 0.99698 0.95793 0.97169 1.21010 0.96326 0.96883 0.98232 1.21109 1.00120 1.00062 0.93474 1.20973 0.98343 0.94979 0.98493 1.21276 0.98041 0.97785 0.97392 0.90252 0.90310 0.91168 0.85403 0.90635 0.91135 0.90214 0.88212 0.88588 0.93592 0.95053 0.92456 0.85668 0.85824 0.86150 0.85913 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.75 8.91 36.01 0.32 -0.43 16 2 C -0.07 -0.63 9.84 -36.10 -0.36 -0.99 16 3 C -0.16 -1.86 6.00 -102.88 -0.62 -2.48 16 4 C -0.12 -1.17 9.37 36.01 0.34 -0.83 16 5 C 0.50 7.58 7.88 34.26 0.27 7.85 16 6 O -0.51 -8.52 16.01 -19.29 -0.31 -8.83 16 7 O -0.32 -5.56 9.03 -47.43 -0.43 -5.98 16 8 C 0.05 0.90 4.62 36.01 0.17 1.06 16 9 C 0.52 10.92 7.62 -10.98 -0.08 10.83 16 10 O -0.50 -12.47 16.13 -14.05 -0.23 -12.70 16 11 N -0.55 -11.64 2.51 -114.74 -0.29 -11.93 16 12 C 0.22 5.39 4.14 -5.19 -0.02 5.37 16 13 C -0.53 -15.24 9.94 -34.44 -0.34 -15.58 16 14 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 15 C 0.07 2.18 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -27.53 13.96 55.43 0.77 -26.76 16 17 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 21 C 0.15 2.70 4.43 -83.69 -0.37 2.32 16 22 C -0.12 -1.99 8.45 -39.39 -0.33 -2.32 16 23 C -0.11 -1.43 10.04 -39.61 -0.40 -1.83 16 24 C -0.13 -1.58 10.04 -39.55 -0.40 -1.98 16 25 C -0.11 -1.39 10.04 -39.61 -0.40 -1.79 16 26 C -0.13 -1.92 9.64 -39.39 -0.38 -2.30 16 27 H 0.08 0.40 7.40 -51.93 -0.38 0.01 16 28 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.13 1.20 7.49 -52.49 -0.39 0.80 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.52 6.50 -51.93 -0.34 0.18 16 33 H 0.08 0.94 7.68 -51.93 -0.40 0.54 16 34 H 0.10 1.61 6.96 -51.93 -0.36 1.24 16 35 H 0.10 1.48 8.02 -51.93 -0.42 1.06 16 36 H 0.05 1.18 6.55 -51.93 -0.34 0.84 16 37 H 0.03 0.73 7.25 -51.93 -0.38 0.35 16 38 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 39 H 0.13 2.11 7.89 -52.49 -0.41 1.69 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -35.09 371.00 -8.22 -43.32 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.97 Total: 1.60 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -2.70 Total: -1.00 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.49 Total: -38.69 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.96 Total: -27.51 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.09 -8.22 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750900269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.570 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds