Wall clock time and date at job start Tue Mar 31 2020 12:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33079 * 119.99853 * 2 1 4 4 C 1.50707 * 120.00258 * 359.97438 * 3 2 1 5 5 C 1.46958 * 120.00104 * 179.97438 * 3 2 1 6 6 O 1.21534 * 119.99431 * 359.97438 * 5 3 2 7 7 O 1.34797 * 119.99928 * 179.97438 * 5 3 2 8 8 C 1.45200 * 116.99489 * 179.97438 * 7 5 3 9 9 C 1.50707 * 109.46740 * 180.02562 * 8 7 5 10 10 O 1.21285 * 120.00045 * 354.73123 * 9 8 7 11 11 N 1.34774 * 119.99689 * 174.72993 * 9 8 7 12 12 C 1.46504 * 119.99858 * 184.43211 * 11 9 8 13 13 C 1.50699 * 109.46734 * 269.99930 * 12 11 9 14 14 H 1.08005 * 120.00470 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99917 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99941 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99915 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47023 * 89.99977 * 17 15 13 19 19 H 1.48497 * 109.46701 * 210.00224 * 17 15 13 20 20 H 1.48500 * 109.46896 * 329.99969 * 17 15 13 21 21 C 1.39930 * 120.00453 * 4.43062 * 11 9 8 22 22 C 1.38872 * 120.06914 * 66.70882 * 21 11 9 23 23 C 1.38109 * 119.92865 * 179.97438 * 22 21 11 24 24 C 1.38289 * 120.07137 * 359.97438 * 23 22 21 25 25 C 1.38281 * 120.13806 * 0.04960 * 24 23 22 26 26 C 1.38114 * 120.07160 * 359.94992 * 25 24 23 27 27 H 1.09000 * 109.47214 * 300.00534 * 1 2 3 28 28 H 1.08999 * 109.46933 * 60.00578 * 1 2 3 29 29 H 1.09002 * 109.47098 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99862 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46938 * 270.00503 * 4 3 2 32 32 H 1.09000 * 109.46620 * 30.00038 * 4 3 2 33 33 H 1.08998 * 109.46907 * 150.00598 * 4 3 2 34 34 H 1.08998 * 109.47229 * 60.00340 * 8 7 5 35 35 H 1.08998 * 109.47256 * 299.99802 * 8 7 5 36 36 H 1.08994 * 109.47395 * 29.99573 * 12 11 9 37 37 H 1.08994 * 109.47195 * 150.00147 * 12 11 9 38 38 H 0.97001 * 119.99539 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.03703 * 359.70435 * 22 21 11 40 40 H 1.07998 * 119.96629 * 179.97438 * 23 22 21 41 41 H 1.07995 * 119.92735 * 180.02562 * 24 23 22 42 42 H 1.08006 * 119.96103 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.03326 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1525 0.0000 4 6 1.4189 2.4577 -0.0006 5 6 3.6420 1.1526 0.0006 6 8 4.2496 0.1000 0.0015 7 8 4.3159 2.3200 0.0000 8 6 5.7659 2.2440 0.0012 9 6 6.3419 3.6366 0.0011 10 8 5.6072 4.5967 -0.0964 11 7 7.6734 3.8151 0.1093 12 6 8.2254 5.1686 0.2069 13 6 8.5219 5.6910 -1.1752 14 1 8.3197 5.0762 -2.0398 15 6 9.0522 6.9536 -1.3359 16 7 9.3104 7.4097 -2.5421 17 14 9.4025 8.0168 0.1596 18 1 10.7876 7.7654 0.6321 19 1 9.2563 9.4486 -0.2060 20 1 8.4419 7.6815 1.2412 21 6 8.5285 2.7077 0.1284 22 6 8.6627 1.9126 -1.0022 23 6 9.5080 0.8206 -0.9803 24 6 10.2208 0.5189 0.1657 25 6 10.0890 1.3085 1.2932 26 6 9.2454 2.4019 1.2778 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.0470 -0.9353 0.0004 31 1 1.2376 2.7720 -1.0284 32 1 0.4663 2.3274 0.5129 33 1 2.0078 3.2174 0.5132 34 1 6.1025 1.7111 -0.8880 35 1 6.1012 1.7126 0.8920 36 1 7.5019 5.8218 0.6947 37 1 9.1452 5.1446 0.7913 38 1 9.6839 8.2978 -2.6551 39 1 8.1033 2.1453 -1.8963 40 1 9.6124 0.2015 -1.8591 41 1 10.8814 -0.3353 0.1801 42 1 10.6468 1.0700 2.1869 43 1 9.1432 3.0184 2.1586 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750900269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:48 Heat of formation + Delta-G solvation = -90.124663 kcal Electronic energy + Delta-G solvation = -26146.545087 eV Core-core repulsion = 22349.884174 eV Total energy + Delta-G solvation = -3796.660913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97008 -41.21806 -39.59577 -37.88003 -36.67427 -36.59518 -34.81439 -32.07842 -31.57979 -30.83653 -30.10983 -28.77460 -27.20301 -24.78812 -24.00616 -23.44032 -23.24651 -20.77870 -19.92613 -19.18471 -18.79127 -18.53789 -17.92818 -17.61449 -17.36254 -17.05039 -16.58393 -16.04695 -15.66114 -15.48457 -15.01253 -14.74008 -14.66321 -14.48288 -14.35309 -14.06120 -14.02530 -13.79380 -13.58454 -13.40852 -13.34748 -13.22533 -12.88989 -12.56888 -12.49089 -12.24600 -12.21274 -12.04734 -11.99583 -11.80141 -11.70957 -11.18472 -10.86174 -10.24717 -10.15746 -9.88919 -9.33027 -8.37695 -6.44180 0.01595 0.26110 0.44448 1.12372 1.29789 1.34836 1.35718 1.44645 1.77462 2.19528 2.27994 2.78889 2.95874 3.23447 3.51321 3.81804 3.84738 3.91341 4.02051 4.06276 4.18489 4.27620 4.41862 4.49766 4.54141 4.61465 4.72125 4.73741 4.78514 4.80606 4.86543 4.99916 5.09015 5.14187 5.16226 5.27898 5.34055 5.37688 5.47388 5.57368 5.57432 5.62513 5.97840 6.14714 6.39035 6.53008 6.55692 6.98514 7.19724 8.79413 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011720 B = 0.003932 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.436862 B = 7118.744959 C = 8862.537676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.034 4.034 3 C -0.197 4.197 4 C -0.110 4.110 5 C 0.496 3.504 6 O -0.537 6.537 7 O -0.342 6.342 8 C 0.068 3.932 9 C 0.511 3.489 10 O -0.553 6.553 11 N -0.551 5.551 12 C 0.230 3.770 13 C -0.539 4.539 14 H 0.026 0.974 15 C 0.014 3.986 16 N -0.943 5.943 17 Si 0.947 3.053 18 H -0.251 1.251 19 H -0.278 1.278 20 H -0.251 1.251 21 C 0.111 3.889 22 C -0.142 4.142 23 C -0.106 4.106 24 C -0.116 4.116 25 C -0.100 4.100 26 C -0.132 4.132 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.032 0.968 37 H 0.053 0.947 38 H 0.270 0.730 39 H 0.103 0.897 40 H 0.148 0.852 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.554 -19.033 10.014 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.053 4.053 3 C -0.198 4.198 4 C -0.166 4.166 5 C 0.345 3.655 6 O -0.429 6.429 7 O -0.258 6.258 8 C -0.009 4.009 9 C 0.299 3.701 10 O -0.430 6.430 11 N -0.279 5.279 12 C 0.110 3.890 13 C -0.578 4.578 14 H 0.045 0.955 15 C -0.185 4.185 16 N -0.582 5.582 17 Si 0.769 3.231 18 H -0.175 1.175 19 H -0.204 1.204 20 H -0.175 1.175 21 C 0.021 3.979 22 C -0.162 4.162 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.119 4.119 26 C -0.151 4.151 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.143 0.857 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.121 0.879 40 H 0.166 0.834 41 H 0.179 0.821 42 H 0.179 0.821 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.695 -18.607 9.867 23.185 hybrid contribution 0.627 1.080 -0.367 1.302 sum -9.068 -17.527 9.500 21.901 Atomic orbital electron populations 1.21153 0.88338 1.05017 1.04185 1.24054 0.98736 0.96207 0.86256 1.20815 0.86834 0.99442 1.12725 1.20780 1.00260 0.92387 1.03213 1.22198 0.90856 0.80622 0.71869 1.90810 1.71030 1.32938 1.48099 1.86645 1.20134 1.34974 1.84021 1.22624 0.78081 0.94346 1.05878 1.20437 0.82247 0.90741 0.76655 1.90689 1.59306 1.43803 1.49191 1.45397 1.04431 1.07225 1.70870 1.19514 0.94402 0.78837 0.96224 1.21420 1.42754 1.01314 0.92295 0.95531 1.25844 0.94372 0.98718 0.99536 1.70046 1.45028 1.19126 1.24015 0.85724 0.80200 0.77903 0.79289 1.17497 1.20354 1.17496 1.18046 0.95979 0.88593 0.95256 1.21401 1.01097 0.97381 0.96287 1.21334 0.95267 0.95854 1.00006 1.21613 0.99043 1.00464 0.92237 1.21423 0.97039 0.93359 1.00045 1.21458 0.98052 0.99017 0.96598 0.88674 0.89126 0.89240 0.85700 0.90720 0.88052 0.92845 0.87627 0.86692 0.94994 0.92909 0.92095 0.87867 0.83425 0.82119 0.82121 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 8.91 71.24 0.63 -0.43 16 2 C -0.03 -0.55 9.84 24.53 0.24 -0.31 16 3 C -0.20 -4.50 6.00 -18.73 -0.11 -4.61 16 4 C -0.11 -2.19 9.37 71.24 0.67 -1.52 16 5 C 0.50 15.49 7.88 70.11 0.55 16.04 16 6 O -0.54 -18.04 16.01 19.72 0.32 -17.72 16 7 O -0.34 -12.45 9.03 -50.71 -0.46 -12.91 16 8 C 0.07 2.45 4.62 71.24 0.33 2.78 16 9 C 0.51 23.03 7.62 87.66 0.67 23.70 16 10 O -0.55 -29.59 16.13 15.70 0.25 -29.34 16 11 N -0.55 -24.44 2.51 -635.31 -1.59 -26.03 16 12 C 0.23 11.64 4.14 85.63 0.35 12.00 16 13 C -0.54 -32.73 9.94 25.60 0.25 -32.47 16 14 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 15 C 0.01 0.82 5.47 84.66 0.46 1.28 16 16 N -0.94 -60.41 13.96 21.45 0.30 -60.11 16 17 Si 0.95 44.57 27.47 68.60 1.88 46.45 16 18 H -0.25 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 21 C 0.11 4.06 4.43 38.15 0.17 4.23 16 22 C -0.14 -4.80 8.45 22.39 0.19 -4.62 16 23 C -0.11 -2.69 10.04 22.25 0.22 -2.47 16 24 C -0.12 -2.38 10.04 22.29 0.22 -2.15 16 25 C -0.10 -2.18 10.04 22.25 0.22 -1.96 16 26 C -0.13 -3.83 9.64 22.39 0.22 -3.61 16 27 H 0.09 0.59 7.40 -2.39 -0.02 0.57 16 28 H 0.09 0.64 8.10 -2.39 -0.02 0.62 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.13 2.13 7.49 -2.91 -0.02 2.11 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.10 1.30 6.50 -2.39 -0.02 1.29 16 33 H 0.05 1.33 7.68 -2.39 -0.02 1.32 16 34 H 0.11 3.64 6.96 -2.39 -0.02 3.63 16 35 H 0.12 3.65 8.02 -2.39 -0.02 3.63 16 36 H 0.03 1.70 6.55 -2.39 -0.02 1.68 16 37 H 0.05 2.43 7.25 -2.39 -0.02 2.41 16 38 H 0.27 16.00 8.31 -92.71 -0.77 15.22 16 39 H 0.10 3.81 7.89 -2.91 -0.02 3.79 16 40 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 41 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 42 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -82.92 371.00 6.95 -75.97 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.95 Total: 17.83 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 5.30 Total: 5.87 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -1.30 Total: -86.14 kcal Atomic # 8 Polarization: -60.08 SS G_CDS: 0.11 Total: -59.97 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Total: -82.92 6.95 -75.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750900269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.158 kcal (2) G-P(sol) polarization free energy of solvation -82.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds