Wall clock time and date at job start Tue Mar 31 2020 12:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50702 * 119.99851 * 2 1 4 4 C 1.33076 * 120.00126 * 179.97438 * 2 1 3 5 5 C 1.50702 * 120.00435 * 171.64436 * 4 2 1 6 6 C 1.46950 * 120.00016 * 351.64208 * 4 2 1 7 7 O 1.21541 * 119.99839 * 2.31106 * 6 4 2 8 8 O 1.34800 * 120.00384 * 182.31832 * 6 4 2 9 9 C 1.45195 * 117.00234 * 180.02562 * 8 6 4 10 10 C 1.50705 * 109.47420 * 179.97438 * 9 8 6 11 11 O 1.21280 * 119.99682 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00228 * 179.97438 * 10 9 8 13 13 C 1.39234 * 120.00114 * 184.76327 * 12 10 9 14 14 C 1.39481 * 119.83374 * 324.20213 * 13 12 10 15 15 C 1.36371 * 120.17263 * 180.29812 * 14 13 12 16 16 C 1.40870 * 119.82425 * 359.47751 * 15 14 13 17 17 C 1.41156 * 120.16611 * 180.25444 * 16 15 14 18 18 H 1.07996 * 120.00282 * 190.06745 * 17 16 15 19 19 C 1.39908 * 119.99621 * 10.06287 * 17 16 15 20 20 N 1.30872 * 120.00066 * 33.49110 * 19 17 16 21 21 Si 1.86807 * 120.00051 * 213.48355 * 19 17 16 22 22 H 1.48503 * 109.46554 * 95.00273 * 21 19 17 23 23 H 1.48498 * 109.47262 * 215.00173 * 21 19 17 24 24 H 1.48494 * 109.46947 * 335.00418 * 21 19 17 25 25 C 1.40870 * 119.67487 * 0.51604 * 16 15 14 26 26 C 1.36371 * 119.82323 * 359.73674 * 25 16 15 27 27 H 1.08997 * 109.47082 * 263.99159 * 1 2 3 28 28 H 1.09004 * 109.46904 * 23.99091 * 1 2 3 29 29 H 1.08994 * 109.47064 * 143.99144 * 1 2 3 30 30 H 1.09005 * 109.46805 * 185.16335 * 3 2 1 31 31 H 1.08991 * 109.47254 * 305.16429 * 3 2 1 32 32 H 1.08996 * 109.47099 * 65.16594 * 3 2 1 33 33 H 1.08995 * 109.47562 * 175.09858 * 5 4 2 34 34 H 1.09004 * 109.46728 * 295.09813 * 5 4 2 35 35 H 1.08998 * 109.46824 * 55.09259 * 5 4 2 36 36 H 1.09004 * 109.47624 * 59.99643 * 9 8 6 37 37 H 1.09006 * 109.47377 * 299.99687 * 9 8 6 38 38 H 0.97001 * 119.99954 * 4.76447 * 12 10 9 39 39 H 1.08006 * 119.91449 * 0.02562 * 14 13 12 40 40 H 1.08002 * 120.08875 * 179.70025 * 15 14 13 41 41 H 0.97009 * 119.99825 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.09098 * 179.71285 * 25 16 15 43 43 H 1.08005 * 119.91454 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1724 -1.1525 0.0005 5 6 3.6674 -1.1596 -0.1891 6 6 1.4494 -2.4183 0.1861 7 8 0.2391 -2.4161 0.2970 8 8 2.1285 -3.5818 0.2334 9 6 1.3492 -4.7928 0.4184 10 6 2.2714 -5.9844 0.4455 11 8 3.4676 -5.8284 0.3207 12 7 1.7669 -7.2235 0.6084 13 6 2.6242 -8.3135 0.7329 14 6 3.8145 -8.3466 0.0065 15 6 4.6564 -9.4136 0.1186 16 6 4.3265 -10.4789 0.9792 17 6 5.1952 -11.5844 1.1048 18 1 4.8710 -12.4687 1.6332 19 6 6.4763 -11.5344 0.5446 20 7 7.1275 -10.4001 0.5008 21 14 7.2573 -13.0869 -0.1405 22 1 7.0068 -13.1633 -1.6022 23 1 8.7207 -13.0570 0.1101 24 1 6.6652 -14.2745 0.5260 25 6 3.1226 -10.4383 1.7097 26 6 2.2884 -9.3670 1.5831 27 1 -0.3633 -0.1076 1.0220 28 1 -0.3633 0.9389 -0.4179 29 1 -0.3633 -0.8313 -0.6041 30 1 3.3286 1.1080 -0.0925 31 1 1.9296 1.9157 -0.8400 32 1 2.0684 1.8356 0.9326 33 1 4.0436 -2.1759 -0.0731 34 1 3.9087 -0.7945 -1.1875 35 1 4.1312 -0.5131 0.5560 36 1 0.6425 -4.8995 -0.4046 37 1 0.8037 -4.7336 1.3603 38 1 0.8064 -7.3559 0.6389 39 1 4.0680 -7.5272 -0.6498 40 1 5.5753 -9.4401 -0.4482 41 1 8.0156 -10.3654 0.1120 42 1 2.8608 -11.2536 2.3678 43 1 1.3653 -9.3341 2.1428 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750940171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:29 Heat of formation + Delta-G solvation = -85.132943 kcal Electronic energy + Delta-G solvation = -25149.356609 eV Core-core repulsion = 21352.912153 eV Total energy + Delta-G solvation = -3796.444456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.73523 -39.50504 -37.56259 -36.93150 -35.91064 -34.50436 -33.09496 -31.04599 -29.80427 -29.36781 -28.50925 -27.95976 -25.34204 -24.74024 -22.43384 -21.42834 -21.00899 -19.69301 -18.79603 -17.57036 -17.36559 -16.93153 -16.71895 -15.99150 -15.69904 -15.24922 -14.97299 -14.67430 -14.25418 -14.09163 -13.90577 -13.33380 -13.13744 -12.99639 -12.81271 -12.72127 -12.50844 -12.47295 -12.27521 -12.06213 -12.01631 -11.98351 -11.62109 -11.40577 -11.14837 -11.00397 -10.78198 -10.54994 -10.15761 -10.08370 -9.80008 -9.46330 -9.13778 -9.12766 -8.59356 -7.52227 -7.21756 -6.92147 -4.28064 0.86915 2.35224 2.55787 2.72866 2.93041 3.03772 3.07470 3.12518 3.33468 3.76369 3.85659 4.47099 4.48571 4.50926 4.74498 4.91712 4.93290 5.05976 5.09696 5.13115 5.31141 5.43107 5.46024 5.53733 5.60182 5.70398 5.73902 5.93168 6.06417 6.15423 6.29005 6.41889 6.44081 6.79535 6.93960 7.03850 7.12246 7.28834 7.57913 7.60948 7.69731 7.96852 8.03900 8.18684 8.28008 8.58649 8.72157 8.83305 8.99879 9.96557 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027158 B = 0.002249 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.757664 B =12445.109438 C =13311.527034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.032 4.032 3 C -0.131 4.131 4 C -0.175 4.175 5 C -0.114 4.114 6 C 0.501 3.499 7 O -0.513 6.513 8 O -0.324 6.324 9 C 0.053 3.947 10 C 0.496 3.504 11 O -0.508 6.508 12 N -0.643 5.643 13 C -0.030 4.030 14 C -0.075 4.075 15 C -0.185 4.185 16 C 0.105 3.895 17 C -0.455 4.455 18 H 0.082 0.918 19 C 0.083 3.917 20 N -0.758 5.758 21 Si 0.902 3.098 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.259 1.259 25 C -0.229 4.229 26 C -0.091 4.091 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.395 0.605 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.285 0.715 42 H 0.094 0.906 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.313 17.540 -2.228 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.033 4.033 3 C -0.187 4.187 4 C -0.176 4.176 5 C -0.171 4.171 6 C 0.348 3.652 7 O -0.404 6.404 8 O -0.239 6.239 9 C -0.025 4.025 10 C 0.280 3.720 11 O -0.382 6.382 12 N -0.288 5.288 13 C -0.121 4.121 14 C -0.094 4.094 15 C -0.204 4.204 16 C 0.102 3.898 17 C -0.482 4.482 18 H 0.100 0.900 19 C -0.140 4.140 20 N -0.380 5.380 21 Si 0.726 3.274 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.183 1.183 25 C -0.249 4.249 26 C -0.111 4.111 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.228 0.772 39 H 0.123 0.877 40 H 0.139 0.861 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.546 17.765 -2.312 19.849 hybrid contribution -0.302 -0.771 -0.157 0.842 sum -8.848 16.994 -2.469 19.318 Atomic orbital electron populations 1.21249 0.90726 1.02997 1.03714 1.22524 0.96764 0.94080 0.89942 1.21087 1.00755 0.93789 1.03042 1.20505 0.97222 0.89091 1.10769 1.20771 0.89989 1.04548 1.01773 1.21404 0.85812 0.84675 0.73289 1.90801 1.15049 1.87692 1.46903 1.86645 1.40188 1.14242 1.82778 1.22709 0.93437 0.82206 1.04109 1.19933 0.89080 0.83650 0.79293 1.90747 1.15276 1.84991 1.47218 1.42703 1.09234 1.05072 1.71782 1.17048 0.96240 0.90203 1.08643 1.20500 0.93469 0.97645 0.97831 1.21044 1.01097 0.95147 1.03158 1.17643 0.91164 0.91881 0.89066 1.19608 0.96937 1.01203 1.30491 0.89959 1.26062 0.97009 0.97521 0.93395 1.69972 1.11117 1.27973 1.28907 0.86393 0.78120 0.82478 0.80426 1.19013 1.20197 1.18250 1.20385 0.98416 0.99581 1.06505 1.20020 0.98771 0.94940 0.97385 0.90298 0.92186 0.88866 0.90436 0.90462 0.90061 0.89917 0.91144 0.91164 0.88599 0.88453 0.77161 0.87714 0.86076 0.90394 0.88735 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 8.52 36.01 0.31 -0.84 16 2 C -0.03 -0.29 6.10 -101.14 -0.62 -0.90 16 3 C -0.13 -0.76 9.90 36.01 0.36 -0.40 16 4 C -0.17 -1.93 5.98 -102.89 -0.62 -2.55 16 5 C -0.11 -1.13 8.67 36.01 0.31 -0.81 16 6 C 0.50 6.83 7.81 34.26 0.27 7.10 16 7 O -0.51 -7.28 12.94 -19.30 -0.25 -7.53 16 8 O -0.32 -4.98 8.74 -47.45 -0.41 -5.40 16 9 C 0.05 0.74 5.96 36.01 0.21 0.95 16 10 C 0.50 9.06 7.74 -10.99 -0.09 8.97 16 11 O -0.51 -11.69 13.94 -14.10 -0.20 -11.89 16 12 N -0.64 -11.41 5.30 -9.74 -0.05 -11.46 16 13 C -0.03 -0.67 6.30 -83.57 -0.53 -1.20 16 14 C -0.07 -1.89 8.61 -39.79 -0.34 -2.23 16 15 C -0.18 -4.98 8.82 -39.26 -0.35 -5.33 16 16 C 0.11 2.82 5.68 -106.80 -0.61 2.22 16 17 C -0.46 -11.95 8.97 -37.85 -0.34 -12.29 16 18 H 0.08 2.07 8.02 -52.49 -0.42 1.64 16 19 C 0.08 2.05 4.92 -17.34 -0.09 1.97 16 20 N -0.76 -19.45 11.08 55.55 0.62 -18.84 16 21 Si 0.90 18.16 29.67 -169.99 -5.04 13.12 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 25 C -0.23 -5.56 9.74 -39.26 -0.38 -5.94 16 26 C -0.09 -2.01 9.90 -39.79 -0.39 -2.40 16 27 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 28 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.09 0.99 6.00 -51.93 -0.31 0.68 16 30 H 0.08 0.42 5.82 -51.93 -0.30 0.12 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 1.01 7.17 -51.93 -0.37 0.64 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.57 7.23 -51.93 -0.38 0.19 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.40 5.28 8.82 -40.82 -0.36 4.92 16 39 H 0.10 2.67 6.25 -52.48 -0.33 2.34 16 40 H 0.12 3.36 5.76 -52.49 -0.30 3.06 16 41 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 42 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 43 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -31.87 362.97 -8.46 -40.33 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.71 Total: 9.88 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.88 Total: -13.68 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.56 Total: -30.29 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.86 Total: -24.81 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.04 Total: 13.12 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.87 -8.46 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750940171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.808 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds