Wall clock time and date at job start Tue Mar 31 2020 12:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50702 * 119.99851 * 2 1 4 4 C 1.33076 * 120.00126 * 179.97438 * 2 1 3 5 5 C 1.50702 * 120.00435 * 171.64436 * 4 2 1 6 6 C 1.46950 * 120.00016 * 351.64208 * 4 2 1 7 7 O 1.21541 * 119.99839 * 2.31106 * 6 4 2 8 8 O 1.34800 * 120.00384 * 182.31832 * 6 4 2 9 9 C 1.45195 * 117.00234 * 180.02562 * 8 6 4 10 10 C 1.50705 * 109.47420 * 179.97438 * 9 8 6 11 11 O 1.21280 * 119.99682 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00228 * 179.97438 * 10 9 8 13 13 C 1.39234 * 120.00114 * 184.76327 * 12 10 9 14 14 C 1.39481 * 119.83374 * 324.20213 * 13 12 10 15 15 C 1.36371 * 120.17263 * 180.29812 * 14 13 12 16 16 C 1.40870 * 119.82425 * 359.47751 * 15 14 13 17 17 C 1.41156 * 120.16611 * 180.25444 * 16 15 14 18 18 H 1.07996 * 120.00282 * 190.06745 * 17 16 15 19 19 C 1.39908 * 119.99621 * 10.06287 * 17 16 15 20 20 N 1.30872 * 120.00066 * 33.49110 * 19 17 16 21 21 Si 1.86807 * 120.00051 * 213.48355 * 19 17 16 22 22 H 1.48503 * 109.46554 * 95.00273 * 21 19 17 23 23 H 1.48498 * 109.47262 * 215.00173 * 21 19 17 24 24 H 1.48494 * 109.46947 * 335.00418 * 21 19 17 25 25 C 1.40870 * 119.67487 * 0.51604 * 16 15 14 26 26 C 1.36371 * 119.82323 * 359.73674 * 25 16 15 27 27 H 1.08997 * 109.47082 * 263.99159 * 1 2 3 28 28 H 1.09004 * 109.46904 * 23.99091 * 1 2 3 29 29 H 1.08994 * 109.47064 * 143.99144 * 1 2 3 30 30 H 1.09005 * 109.46805 * 185.16335 * 3 2 1 31 31 H 1.08991 * 109.47254 * 305.16429 * 3 2 1 32 32 H 1.08996 * 109.47099 * 65.16594 * 3 2 1 33 33 H 1.08995 * 109.47562 * 175.09858 * 5 4 2 34 34 H 1.09004 * 109.46728 * 295.09813 * 5 4 2 35 35 H 1.08998 * 109.46824 * 55.09259 * 5 4 2 36 36 H 1.09004 * 109.47624 * 59.99643 * 9 8 6 37 37 H 1.09006 * 109.47377 * 299.99687 * 9 8 6 38 38 H 0.97001 * 119.99954 * 4.76447 * 12 10 9 39 39 H 1.08006 * 119.91449 * 0.02562 * 14 13 12 40 40 H 1.08002 * 120.08875 * 179.70025 * 15 14 13 41 41 H 0.97009 * 119.99825 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.09098 * 179.71285 * 25 16 15 43 43 H 1.08005 * 119.91454 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1724 -1.1525 0.0005 5 6 3.6674 -1.1596 -0.1891 6 6 1.4494 -2.4183 0.1861 7 8 0.2391 -2.4161 0.2970 8 8 2.1285 -3.5818 0.2334 9 6 1.3492 -4.7928 0.4184 10 6 2.2714 -5.9844 0.4455 11 8 3.4676 -5.8284 0.3207 12 7 1.7669 -7.2235 0.6084 13 6 2.6242 -8.3135 0.7329 14 6 3.8145 -8.3466 0.0065 15 6 4.6564 -9.4136 0.1186 16 6 4.3265 -10.4789 0.9792 17 6 5.1952 -11.5844 1.1048 18 1 4.8710 -12.4687 1.6332 19 6 6.4763 -11.5344 0.5446 20 7 7.1275 -10.4001 0.5008 21 14 7.2573 -13.0869 -0.1405 22 1 7.0068 -13.1633 -1.6022 23 1 8.7207 -13.0570 0.1101 24 1 6.6652 -14.2745 0.5260 25 6 3.1226 -10.4383 1.7097 26 6 2.2884 -9.3670 1.5831 27 1 -0.3633 -0.1076 1.0220 28 1 -0.3633 0.9389 -0.4179 29 1 -0.3633 -0.8313 -0.6041 30 1 3.3286 1.1080 -0.0925 31 1 1.9296 1.9157 -0.8400 32 1 2.0684 1.8356 0.9326 33 1 4.0436 -2.1759 -0.0731 34 1 3.9087 -0.7945 -1.1875 35 1 4.1312 -0.5131 0.5560 36 1 0.6425 -4.8995 -0.4046 37 1 0.8037 -4.7336 1.3603 38 1 0.8064 -7.3559 0.6389 39 1 4.0680 -7.5272 -0.6498 40 1 5.5753 -9.4401 -0.4482 41 1 8.0156 -10.3654 0.1120 42 1 2.8608 -11.2536 2.3678 43 1 1.3653 -9.3341 2.1428 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750940171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:28 Heat of formation + Delta-G solvation = -102.724158 kcal Electronic energy + Delta-G solvation = -25150.119421 eV Core-core repulsion = 21352.912153 eV Total energy + Delta-G solvation = -3797.207268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.82982 -41.02257 -39.12561 -38.12638 -36.84809 -36.26383 -34.86989 -31.95432 -31.45221 -31.16431 -29.67623 -28.81092 -26.68912 -25.98144 -23.59571 -23.18175 -22.63726 -21.29790 -19.78342 -19.33754 -18.81213 -18.17605 -17.82370 -17.55265 -17.07810 -16.58055 -16.24403 -15.81041 -15.48974 -15.27406 -15.20394 -14.84907 -14.52723 -14.06242 -14.01012 -13.88436 -13.80493 -13.75155 -13.37889 -13.27527 -13.12830 -13.03438 -12.83733 -12.74194 -12.69846 -12.31117 -12.27368 -11.89148 -11.83204 -11.65052 -11.25228 -11.07734 -10.81807 -10.42396 -9.86397 -9.46241 -9.08258 -8.77411 -6.23565 0.05168 0.78949 1.15763 1.27805 1.35070 1.41357 1.52576 1.70949 1.80151 2.16343 2.45268 2.63193 3.57824 3.68142 3.74965 3.80113 3.98139 4.03258 4.05917 4.29890 4.44107 4.49020 4.66729 4.69433 4.77252 4.81821 4.90633 4.94599 4.96824 5.06936 5.09063 5.17295 5.18784 5.27144 5.29461 5.42068 5.50367 5.65759 5.66746 5.86275 6.08510 6.09086 6.29658 6.58074 6.64941 6.69939 6.87782 6.99323 7.32540 8.14720 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027158 B = 0.002249 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.757664 B =12445.109438 C =13311.527034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.008 4.008 3 C -0.132 4.132 4 C -0.210 4.210 5 C -0.107 4.107 6 C 0.496 3.504 7 O -0.525 6.525 8 O -0.348 6.348 9 C 0.062 3.938 10 C 0.496 3.504 11 O -0.561 6.561 12 N -0.631 5.631 13 C -0.021 4.021 14 C -0.089 4.089 15 C -0.214 4.214 16 C 0.074 3.926 17 C -0.490 4.490 18 H 0.086 0.914 19 C 0.041 3.959 20 N -0.796 5.796 21 Si 0.981 3.019 22 H -0.263 1.263 23 H -0.265 1.265 24 H -0.251 1.251 25 C -0.240 4.240 26 C -0.084 4.084 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.421 0.579 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.293 0.707 42 H 0.110 0.890 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.102 18.855 -1.984 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.009 4.009 3 C -0.187 4.187 4 C -0.211 4.211 5 C -0.164 4.164 6 C 0.345 3.655 7 O -0.417 6.417 8 O -0.264 6.264 9 C -0.015 4.015 10 C 0.283 3.717 11 O -0.439 6.439 12 N -0.278 5.278 13 C -0.114 4.114 14 C -0.109 4.109 15 C -0.234 4.234 16 C 0.072 3.928 17 C -0.517 4.517 18 H 0.104 0.896 19 C -0.179 4.179 20 N -0.419 5.419 21 Si 0.801 3.199 22 H -0.188 1.188 23 H -0.190 1.190 24 H -0.174 1.174 25 C -0.260 4.260 26 C -0.104 4.104 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.259 0.741 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.128 0.872 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.393 19.092 -2.058 21.835 hybrid contribution 0.121 -0.980 -0.207 1.009 sum -10.272 18.113 -2.265 20.945 Atomic orbital electron populations 1.21263 0.90659 1.03645 1.03320 1.22923 0.97010 0.94693 0.86225 1.21220 1.00654 0.92214 1.04655 1.20604 0.97722 0.88642 1.14131 1.20712 0.89554 1.02989 1.03127 1.21892 0.85915 0.84734 0.72939 1.90788 1.15326 1.87747 1.47885 1.86648 1.41350 1.15106 1.83275 1.22672 0.92096 0.80134 1.06592 1.20699 0.88965 0.84701 0.77346 1.90736 1.17975 1.85837 1.49397 1.42546 1.10074 1.03935 1.71231 1.17112 0.95646 0.91462 1.07141 1.20544 0.94913 0.96853 0.98597 1.20972 1.01313 0.96605 1.04524 1.17999 0.92762 0.92205 0.89864 1.19877 0.97994 1.01433 1.32360 0.89642 1.27008 0.97096 1.00935 0.92843 1.70006 1.11879 1.30340 1.29659 0.85214 0.77462 0.77901 0.79337 1.18794 1.18998 1.17373 1.20677 0.98019 1.00885 1.06373 1.20385 0.99824 0.93503 0.96687 0.90518 0.89459 0.90849 0.89985 0.88467 0.88353 0.93092 0.89890 0.89482 0.85803 0.85858 0.74135 0.88936 0.88132 0.89561 0.87205 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.52 71.24 0.61 -1.44 16 2 C -0.01 -0.12 6.10 -17.60 -0.11 -0.23 16 3 C -0.13 -1.08 9.90 71.24 0.71 -0.38 16 4 C -0.21 -4.46 5.98 -18.74 -0.11 -4.57 16 5 C -0.11 -2.08 8.67 71.24 0.62 -1.46 16 6 C 0.50 13.32 7.81 70.10 0.55 13.87 16 7 O -0.52 -14.38 12.94 19.70 0.25 -14.12 16 8 O -0.35 -10.74 8.74 -50.72 -0.44 -11.18 16 9 C 0.06 1.64 5.96 71.24 0.42 2.07 16 10 C 0.50 17.93 7.74 87.66 0.68 18.61 16 11 O -0.56 -26.72 13.94 15.77 0.22 -26.50 16 12 N -0.63 -21.45 5.30 -303.12 -1.61 -23.06 16 13 C -0.02 -0.93 6.30 38.56 0.24 -0.68 16 14 C -0.09 -4.69 8.61 22.13 0.19 -4.50 16 15 C -0.21 -12.18 8.82 22.48 0.20 -11.98 16 16 C 0.07 4.13 5.68 -21.27 -0.12 4.01 16 17 C -0.49 -26.51 8.97 23.39 0.21 -26.30 16 18 H 0.09 4.39 8.02 -2.91 -0.02 4.37 16 19 C 0.04 2.08 4.92 85.24 0.42 2.50 16 20 N -0.80 -42.64 11.08 21.82 0.24 -42.40 16 21 Si 0.98 37.82 29.67 68.60 2.04 39.86 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 23 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 24 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 25 C -0.24 -11.62 9.74 22.48 0.22 -11.40 16 26 C -0.08 -3.58 9.90 22.13 0.22 -3.36 16 27 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 28 H 0.09 0.86 8.09 -2.39 -0.02 0.84 16 29 H 0.07 1.47 6.00 -2.39 -0.01 1.46 16 30 H 0.08 0.64 5.82 -2.38 -0.01 0.63 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.05 1.31 7.17 -2.39 -0.02 1.29 16 34 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.09 1.31 7.23 -2.39 -0.02 1.29 16 36 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 38 H 0.42 9.99 8.82 -92.71 -0.82 9.17 16 39 H 0.09 5.01 6.25 -2.91 -0.02 4.99 16 40 H 0.10 6.00 5.76 -2.91 -0.02 5.98 16 41 H 0.29 14.05 8.30 -92.70 -0.77 13.28 16 42 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 43 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -73.92 362.97 5.87 -68.05 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.23 Total: 34.60 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 4.94 Total: -25.24 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -1.37 Total: -65.46 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: 0.03 Total: -51.81 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.04 Total: 39.86 kcal Total: -73.92 5.87 -68.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750940171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.673 kcal (2) G-P(sol) polarization free energy of solvation -73.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds