Wall clock time and date at job start Tue Mar 31 2020 12:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.50701 * 119.99851 * 2 1 4 4 C 1.33084 * 120.00403 * 180.02562 * 2 1 3 5 5 C 1.50700 * 120.00336 * 172.22583 * 4 2 1 6 6 C 1.46951 * 119.99695 * 352.22012 * 4 2 1 7 7 O 1.21533 * 120.00322 * 1.10241 * 6 4 2 8 8 O 1.34801 * 120.00046 * 181.09755 * 6 4 2 9 9 C 1.45198 * 117.00101 * 185.11680 * 8 6 4 10 10 C 1.50696 * 109.47117 * 184.78020 * 9 8 6 11 11 O 1.21280 * 119.99963 * 355.02384 * 10 9 8 12 12 N 1.34781 * 120.00064 * 175.02820 * 10 9 8 13 13 C 1.37141 * 120.00066 * 5.50379 * 12 10 9 14 14 H 1.08003 * 119.99395 * 310.81298 * 13 12 10 15 15 C 1.38882 * 120.00087 * 130.81358 * 13 12 10 16 16 N 1.31426 * 119.99665 * 169.70360 * 15 13 12 17 17 Si 1.86791 * 120.00406 * 349.70763 * 15 13 12 18 18 H 1.48499 * 109.47316 * 95.05905 * 17 15 13 19 19 H 1.48500 * 109.47257 * 215.06321 * 17 15 13 20 20 H 1.48508 * 109.46913 * 335.06490 * 17 15 13 21 21 C 1.39792 * 119.99960 * 185.50065 * 12 10 9 22 22 C 1.38962 * 120.07488 * 171.76034 * 21 12 10 23 23 C 1.38082 * 119.92131 * 179.97438 * 22 21 12 24 24 C 1.38310 * 120.07510 * 0.02562 * 23 22 21 25 25 C 1.38305 * 120.15790 * 359.97438 * 24 23 22 26 26 C 1.38083 * 120.07691 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.47351 * 263.12065 * 1 2 3 28 28 H 1.09001 * 109.47661 * 23.12794 * 1 2 3 29 29 H 1.09000 * 109.47146 * 143.12401 * 1 2 3 30 30 H 1.09003 * 109.47238 * 274.03644 * 3 2 1 31 31 H 1.08992 * 109.47470 * 34.03857 * 3 2 1 32 32 H 1.09003 * 109.47161 * 154.04557 * 3 2 1 33 33 H 1.09005 * 109.47064 * 185.17485 * 5 4 2 34 34 H 1.09000 * 109.47156 * 305.17344 * 5 4 2 35 35 H 1.09003 * 109.47052 * 65.17159 * 5 4 2 36 36 H 1.08999 * 109.46973 * 64.77860 * 9 8 6 37 37 H 1.08999 * 109.47142 * 304.77902 * 9 8 6 38 38 H 0.96998 * 120.00011 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.03927 * 359.71269 * 22 21 12 40 40 H 1.08001 * 119.96123 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.92018 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.95957 * 180.02562 * 25 24 23 43 43 H 1.08009 * 120.03807 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1724 -1.1525 -0.0005 5 6 3.6690 -1.1584 -0.1771 6 6 1.4478 -2.4194 0.1712 7 8 0.2387 -2.4161 0.2936 8 8 2.1243 -3.5852 0.1929 9 6 1.3365 -4.8034 0.2509 10 6 2.2556 -5.9900 0.3860 11 8 3.4574 -5.8346 0.3384 12 7 1.7420 -7.2240 0.5596 13 6 0.3854 -7.4166 0.5006 14 1 -0.2758 -6.7782 1.0677 15 6 -0.1380 -8.4326 -0.2885 16 7 -1.4097 -8.7502 -0.1925 17 14 0.9654 -9.3479 -1.4860 18 1 1.4689 -10.5894 -0.8453 19 1 0.1912 -9.6982 -2.7038 20 1 2.1135 -8.4837 -1.8608 21 6 2.5920 -8.3074 0.7998 22 6 2.0625 -9.5442 1.1479 23 6 2.9051 -10.6124 1.3839 24 6 4.2746 -10.4523 1.2747 25 6 4.8050 -9.2228 0.9283 26 6 3.9683 -8.1506 0.6899 27 1 -0.3634 -0.1231 1.0203 28 1 -0.3634 0.9450 -0.4036 29 1 -0.3633 -0.8221 -0.6167 30 1 2.3794 1.6560 -1.0251 31 1 1.7046 2.0455 0.5752 32 1 3.2423 1.1578 0.4498 33 1 4.0231 -2.1873 -0.2427 34 1 3.9291 -0.6256 -1.0917 35 1 4.1374 -0.6666 0.6755 36 1 0.7497 -4.9005 -0.6625 37 1 0.6671 -4.7627 1.1102 38 1 -1.7754 -9.4595 -0.7439 39 1 0.9935 -9.6686 1.2379 40 1 2.4943 -11.5737 1.6550 41 1 4.9313 -11.2894 1.4602 42 1 5.8748 -9.1015 0.8435 43 1 4.3832 -7.1906 0.4199 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750943154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:00 Heat of formation + Delta-G solvation = -52.840547 kcal Electronic energy + Delta-G solvation = -26530.187756 eV Core-core repulsion = 22735.143603 eV Total energy + Delta-G solvation = -3795.044153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.48457 -39.93831 -37.74892 -36.83794 -35.61646 -35.20034 -32.31942 -30.87601 -30.15386 -29.83087 -28.23343 -27.40988 -25.35532 -24.99728 -22.53131 -21.73320 -21.27939 -19.59856 -18.53366 -18.24960 -16.94893 -16.35469 -16.25807 -15.80326 -15.74775 -15.32516 -14.77409 -14.44929 -14.22871 -14.06759 -13.84013 -13.37229 -13.13095 -12.95496 -12.87514 -12.79323 -12.57419 -12.44259 -12.41665 -12.10970 -11.95897 -11.93258 -11.89904 -11.44112 -11.36068 -11.04859 -10.73834 -10.36685 -10.28830 -10.16516 -9.83881 -9.62103 -8.99475 -8.93817 -8.47903 -8.05694 -7.18829 -6.65985 -4.55252 1.12479 1.97201 2.13511 2.74655 3.03508 3.09675 3.20133 3.28741 3.39031 4.01315 4.10197 4.51112 4.68001 4.74832 4.80820 5.01285 5.11402 5.26222 5.32945 5.47745 5.58103 5.58553 5.61218 5.65477 5.70898 5.73545 5.77489 5.82608 5.87140 5.94945 6.12452 6.25369 6.32028 6.35310 6.49311 6.52406 6.75257 6.78488 7.11027 7.19004 7.24448 7.30610 7.65422 7.86135 7.99338 8.10844 8.64984 8.96199 9.21304 10.37630 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018368 B = 0.003680 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.046718 B = 7607.288445 C = 8701.531504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.038 4.038 3 C -0.125 4.125 4 C -0.173 4.173 5 C -0.111 4.111 6 C 0.497 3.503 7 O -0.507 6.507 8 O -0.334 6.334 9 C 0.072 3.928 10 C 0.498 3.502 11 O -0.540 6.540 12 N -0.400 5.400 13 C -0.381 4.381 14 H 0.113 0.887 15 C 0.087 3.913 16 N -0.850 5.850 17 Si 0.866 3.134 18 H -0.248 1.248 19 H -0.286 1.286 20 H -0.260 1.260 21 C 0.154 3.846 22 C -0.151 4.151 23 C -0.107 4.107 24 C -0.168 4.168 25 C -0.110 4.110 26 C -0.184 4.184 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.281 0.719 39 H 0.141 0.859 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.552 11.502 -0.134 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.039 4.039 3 C -0.181 4.181 4 C -0.174 4.174 5 C -0.168 4.168 6 C 0.344 3.656 7 O -0.398 6.398 8 O -0.250 6.250 9 C -0.004 4.004 10 C 0.289 3.711 11 O -0.422 6.422 12 N -0.111 5.111 13 C -0.506 4.506 14 H 0.130 0.870 15 C -0.124 4.124 16 N -0.482 5.482 17 Si 0.692 3.308 18 H -0.172 1.172 19 H -0.213 1.213 20 H -0.184 1.184 21 C 0.058 3.942 22 C -0.171 4.171 23 C -0.126 4.126 24 C -0.188 4.188 25 C -0.129 4.129 26 C -0.203 4.203 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.159 0.841 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.540 11.498 -0.175 13.229 hybrid contribution -0.060 -0.892 -0.552 1.051 sum 6.481 10.605 -0.728 12.450 Atomic orbital electron populations 1.21238 0.90690 1.02788 1.03829 1.22488 0.96789 0.93959 0.90638 1.21002 1.00360 0.93823 1.02919 1.20528 0.97060 0.89384 1.10462 1.20730 0.90189 1.04406 1.01434 1.21306 0.85874 0.84788 0.73671 1.90823 1.15137 1.87868 1.45998 1.86535 1.40595 1.14190 1.83655 1.22551 0.92461 0.79912 1.05509 1.20208 0.87902 0.84577 0.78414 1.90241 1.15242 1.84943 1.51814 1.41227 1.07110 1.03911 1.58803 1.19109 0.78434 1.21884 1.31220 0.86977 1.25409 0.95634 0.96002 0.95393 1.69679 1.12721 1.28361 1.37461 0.87076 0.80943 0.82200 0.80623 1.17214 1.21308 1.18404 1.18389 0.90124 0.88685 0.96985 1.21112 1.01565 0.91802 1.02617 1.20822 0.93354 0.97942 1.00435 1.20938 0.95020 0.97451 1.05343 1.21011 0.99000 0.92936 0.99965 1.22791 0.91991 1.02663 1.02861 0.90254 0.92382 0.88845 0.90248 0.90781 0.90682 0.89975 0.91469 0.91341 0.87669 0.88191 0.90843 0.84112 0.86795 0.87303 0.86865 0.80406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 8.49 36.00 0.31 -1.16 16 2 C -0.04 -0.42 6.10 -101.14 -0.62 -1.03 16 3 C -0.12 -0.91 9.52 36.01 0.34 -0.56 16 4 C -0.17 -2.29 5.98 -102.89 -0.62 -2.90 16 5 C -0.11 -1.23 8.77 36.01 0.32 -0.92 16 6 C 0.50 8.42 7.80 34.26 0.27 8.69 16 7 O -0.51 -9.31 12.85 -19.29 -0.25 -9.56 16 8 O -0.33 -6.32 8.74 -47.44 -0.41 -6.74 16 9 C 0.07 1.45 4.84 36.00 0.17 1.63 16 10 C 0.50 11.42 7.65 -10.99 -0.08 11.34 16 11 O -0.54 -12.81 12.92 -14.05 -0.18 -13.00 16 12 N -0.40 -9.66 2.29 -58.98 -0.13 -9.80 16 13 C -0.38 -9.62 8.25 -14.94 -0.12 -9.74 16 14 H 0.11 2.93 7.51 -52.48 -0.39 2.53 16 15 C 0.09 2.21 4.14 -17.49 -0.07 2.14 16 16 N -0.85 -22.50 13.96 55.49 0.77 -21.72 16 17 Si 0.87 20.58 24.18 -169.99 -4.11 16.47 16 18 H -0.25 -5.66 5.82 56.52 0.33 -5.33 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.26 -6.53 7.01 56.52 0.40 -6.13 16 21 C 0.15 3.63 4.49 -83.70 -0.38 3.26 16 22 C -0.15 -3.38 5.71 -39.37 -0.22 -3.60 16 23 C -0.11 -2.07 9.65 -39.61 -0.38 -2.45 16 24 C -0.17 -3.02 10.04 -39.53 -0.40 -3.42 16 25 C -0.11 -2.08 10.04 -39.61 -0.40 -2.48 16 26 C -0.18 -4.04 9.04 -39.37 -0.36 -4.39 16 27 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 28 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.09 1.28 6.06 -51.93 -0.31 0.96 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.50 6.54 -51.93 -0.34 0.16 16 33 H 0.08 1.08 7.18 -51.93 -0.37 0.71 16 34 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 35 H 0.07 0.64 7.44 -51.93 -0.39 0.26 16 36 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 37 H 0.10 1.98 7.53 -51.93 -0.39 1.59 16 38 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.14 3.34 5.58 -52.49 -0.29 3.05 16 40 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.18 4.06 4.56 -56.07 -0.26 3.81 16 LS Contribution 348.91 15.07 5.26 5.26 Total: -1.00 -29.17 348.91 -7.05 -36.22 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.75 Total: 8.47 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -2.24 Total: -5.60 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 0.64 Total: -31.52 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.84 Total: -29.29 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.11 Total: 16.47 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.17 -7.05 -36.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750943154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.620 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds