Wall clock time and date at job start Tue Mar 31 2020 12:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.50701 * 119.99851 * 2 1 4 4 C 1.33084 * 120.00403 * 180.02562 * 2 1 3 5 5 C 1.50700 * 120.00336 * 172.22583 * 4 2 1 6 6 C 1.46951 * 119.99695 * 352.22012 * 4 2 1 7 7 O 1.21533 * 120.00322 * 1.10241 * 6 4 2 8 8 O 1.34801 * 120.00046 * 181.09755 * 6 4 2 9 9 C 1.45198 * 117.00101 * 185.11680 * 8 6 4 10 10 C 1.50696 * 109.47117 * 184.78020 * 9 8 6 11 11 O 1.21280 * 119.99963 * 355.02384 * 10 9 8 12 12 N 1.34781 * 120.00064 * 175.02820 * 10 9 8 13 13 C 1.37141 * 120.00066 * 5.50379 * 12 10 9 14 14 H 1.08003 * 119.99395 * 310.81298 * 13 12 10 15 15 C 1.38882 * 120.00087 * 130.81358 * 13 12 10 16 16 N 1.31426 * 119.99665 * 169.70360 * 15 13 12 17 17 Si 1.86791 * 120.00406 * 349.70763 * 15 13 12 18 18 H 1.48499 * 109.47316 * 95.05905 * 17 15 13 19 19 H 1.48500 * 109.47257 * 215.06321 * 17 15 13 20 20 H 1.48508 * 109.46913 * 335.06490 * 17 15 13 21 21 C 1.39792 * 119.99960 * 185.50065 * 12 10 9 22 22 C 1.38962 * 120.07488 * 171.76034 * 21 12 10 23 23 C 1.38082 * 119.92131 * 179.97438 * 22 21 12 24 24 C 1.38310 * 120.07510 * 0.02562 * 23 22 21 25 25 C 1.38305 * 120.15790 * 359.97438 * 24 23 22 26 26 C 1.38083 * 120.07691 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.47351 * 263.12065 * 1 2 3 28 28 H 1.09001 * 109.47661 * 23.12794 * 1 2 3 29 29 H 1.09000 * 109.47146 * 143.12401 * 1 2 3 30 30 H 1.09003 * 109.47238 * 274.03644 * 3 2 1 31 31 H 1.08992 * 109.47470 * 34.03857 * 3 2 1 32 32 H 1.09003 * 109.47161 * 154.04557 * 3 2 1 33 33 H 1.09005 * 109.47064 * 185.17485 * 5 4 2 34 34 H 1.09000 * 109.47156 * 305.17344 * 5 4 2 35 35 H 1.09003 * 109.47052 * 65.17159 * 5 4 2 36 36 H 1.08999 * 109.46973 * 64.77860 * 9 8 6 37 37 H 1.08999 * 109.47142 * 304.77902 * 9 8 6 38 38 H 0.96998 * 120.00011 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.03927 * 359.71269 * 22 21 12 40 40 H 1.08001 * 119.96123 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.92018 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.95957 * 180.02562 * 25 24 23 43 43 H 1.08009 * 120.03807 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1724 -1.1525 -0.0005 5 6 3.6690 -1.1584 -0.1771 6 6 1.4478 -2.4194 0.1712 7 8 0.2387 -2.4161 0.2936 8 8 2.1243 -3.5852 0.1929 9 6 1.3365 -4.8034 0.2509 10 6 2.2556 -5.9900 0.3860 11 8 3.4574 -5.8346 0.3384 12 7 1.7420 -7.2240 0.5596 13 6 0.3854 -7.4166 0.5006 14 1 -0.2758 -6.7782 1.0677 15 6 -0.1380 -8.4326 -0.2885 16 7 -1.4097 -8.7502 -0.1925 17 14 0.9654 -9.3479 -1.4860 18 1 1.4689 -10.5894 -0.8453 19 1 0.1912 -9.6982 -2.7038 20 1 2.1135 -8.4837 -1.8608 21 6 2.5920 -8.3074 0.7998 22 6 2.0625 -9.5442 1.1479 23 6 2.9051 -10.6124 1.3839 24 6 4.2746 -10.4523 1.2747 25 6 4.8050 -9.2228 0.9283 26 6 3.9683 -8.1506 0.6899 27 1 -0.3634 -0.1231 1.0203 28 1 -0.3634 0.9450 -0.4036 29 1 -0.3633 -0.8221 -0.6167 30 1 2.3794 1.6560 -1.0251 31 1 1.7046 2.0455 0.5752 32 1 3.2423 1.1578 0.4498 33 1 4.0231 -2.1873 -0.2427 34 1 3.9291 -0.6256 -1.0917 35 1 4.1374 -0.6666 0.6755 36 1 0.7497 -4.9005 -0.6625 37 1 0.6671 -4.7627 1.1102 38 1 -1.7754 -9.4595 -0.7439 39 1 0.9935 -9.6686 1.2379 40 1 2.4943 -11.5737 1.6550 41 1 4.9313 -11.2894 1.4602 42 1 5.8748 -9.1015 0.8435 43 1 4.3832 -7.1906 0.4199 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750943154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:59 Heat of formation + Delta-G solvation = -67.751629 kcal Electronic energy + Delta-G solvation = -26530.834349 eV Core-core repulsion = 22735.143603 eV Total energy + Delta-G solvation = -3795.690746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.08201 -41.44581 -39.32963 -38.10404 -37.06008 -36.80345 -34.28002 -32.02133 -31.73674 -31.26694 -29.31053 -28.67824 -27.23633 -26.02724 -23.99025 -23.23066 -22.76644 -21.41955 -20.10170 -19.69958 -18.38307 -17.98325 -17.86794 -17.53415 -17.16629 -16.69411 -16.33879 -15.90569 -15.49424 -15.27973 -15.22709 -14.99544 -14.72301 -14.51164 -14.35345 -14.14517 -13.81012 -13.73523 -13.67214 -13.36928 -13.17938 -13.13280 -12.96275 -12.76876 -12.72495 -12.49887 -12.27201 -12.15444 -11.90927 -11.86046 -11.44138 -11.07310 -10.88095 -10.24082 -9.86121 -9.66809 -8.95311 -8.63281 -6.55557 0.06929 0.34439 0.52433 1.20363 1.26512 1.29489 1.36791 1.60390 1.82152 2.08764 2.50172 2.67175 3.06101 3.57932 3.63766 3.81568 4.01660 4.05852 4.11926 4.16884 4.19814 4.33940 4.44748 4.64859 4.65708 4.67998 4.74589 4.77824 4.80142 4.87027 4.92556 4.98718 5.12398 5.19280 5.20766 5.29571 5.41707 5.50050 5.53588 5.63045 5.69774 5.71187 5.88914 5.93507 6.33081 6.63911 6.72314 7.06694 7.34817 8.41803 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018368 B = 0.003680 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.046718 B = 7607.288445 C = 8701.531504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.010 4.010 3 C -0.124 4.124 4 C -0.207 4.207 5 C -0.103 4.103 6 C 0.487 3.513 7 O -0.532 6.532 8 O -0.343 6.343 9 C 0.082 3.918 10 C 0.492 3.508 11 O -0.552 6.552 12 N -0.411 5.411 13 C -0.378 4.378 14 H 0.092 0.908 15 C 0.063 3.937 16 N -0.881 5.881 17 Si 0.912 3.088 18 H -0.230 1.230 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.122 3.878 22 C -0.171 4.171 23 C -0.107 4.107 24 C -0.152 4.152 25 C -0.104 4.104 26 C -0.203 4.203 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.287 0.713 39 H 0.120 0.880 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.838 11.799 -0.215 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.011 4.011 3 C -0.179 4.179 4 C -0.208 4.208 5 C -0.159 4.159 6 C 0.336 3.664 7 O -0.424 6.424 8 O -0.259 6.259 9 C 0.005 3.995 10 C 0.283 3.717 11 O -0.435 6.435 12 N -0.122 5.122 13 C -0.504 4.504 14 H 0.109 0.891 15 C -0.145 4.145 16 N -0.515 5.515 17 Si 0.736 3.264 18 H -0.153 1.153 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.027 3.973 22 C -0.192 4.192 23 C -0.125 4.125 24 C -0.171 4.171 25 C -0.123 4.123 26 C -0.222 4.222 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.138 0.862 40 H 0.162 0.838 41 H 0.174 0.826 42 H 0.167 0.833 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.835 11.784 -0.245 14.730 hybrid contribution -0.734 -0.905 -0.452 1.250 sum 8.101 10.879 -0.698 13.582 Atomic orbital electron populations 1.21253 0.91307 1.03396 1.03038 1.22936 0.96661 0.94965 0.86493 1.21152 1.00547 0.91605 1.04645 1.20654 0.98169 0.87905 1.14065 1.20701 0.88647 1.03170 1.03395 1.22211 0.86049 0.85173 0.72947 1.90811 1.16141 1.88018 1.47477 1.86561 1.40820 1.14360 1.84177 1.22286 0.91926 0.80231 1.05066 1.20546 0.88164 0.84930 0.78064 1.90230 1.15619 1.85227 1.52413 1.41274 1.06738 1.04700 1.59505 1.18937 0.79102 1.21503 1.30836 0.89063 1.25773 0.96222 0.96427 0.96115 1.69719 1.13717 1.29427 1.38632 0.86395 0.78955 0.81696 0.79310 1.15319 1.20947 1.20842 1.18688 0.90831 0.88851 0.98923 1.21106 1.01097 0.92586 1.04380 1.21254 0.94008 0.98173 0.99085 1.21444 0.94881 0.98293 1.02460 1.21439 1.00490 0.92259 0.98094 1.22799 0.91778 1.03544 1.04098 0.90894 0.89135 0.91640 0.88075 0.88858 0.89546 0.92829 0.89239 0.89441 0.88033 0.88572 0.90280 0.86180 0.83767 0.82634 0.83267 0.81752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.49 71.23 0.61 -2.32 16 2 C -0.01 -0.20 6.10 -17.61 -0.11 -0.30 16 3 C -0.12 -1.33 9.52 71.24 0.68 -0.65 16 4 C -0.21 -5.41 5.98 -18.74 -0.11 -5.53 16 5 C -0.10 -2.18 8.77 71.24 0.62 -1.56 16 6 C 0.49 17.37 7.80 70.10 0.55 17.92 16 7 O -0.53 -20.74 12.85 19.73 0.25 -20.49 16 8 O -0.34 -13.81 8.74 -50.75 -0.44 -14.25 16 9 C 0.08 3.54 4.84 71.23 0.34 3.89 16 10 C 0.49 23.79 7.65 87.65 0.67 24.46 16 11 O -0.55 -27.32 12.92 15.72 0.20 -27.11 16 12 N -0.41 -20.73 2.29 -458.90 -1.05 -21.78 16 13 C -0.38 -20.07 8.25 84.02 0.69 -19.38 16 14 H 0.09 5.12 7.51 -2.91 -0.02 5.10 16 15 C 0.06 3.32 4.14 84.91 0.35 3.67 16 16 N -0.88 -47.98 13.96 21.65 0.30 -47.68 16 17 Si 0.91 43.17 24.18 68.60 1.66 44.82 16 18 H -0.23 -10.09 5.82 99.48 0.58 -9.51 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.28 -14.41 7.01 99.48 0.70 -13.71 16 21 C 0.12 5.82 4.49 38.22 0.17 6.00 16 22 C -0.17 -7.61 5.71 22.41 0.13 -7.49 16 23 C -0.11 -3.83 9.65 22.25 0.21 -3.61 16 24 C -0.15 -4.78 10.04 22.30 0.22 -4.55 16 25 C -0.10 -3.61 10.04 22.25 0.22 -3.39 16 26 C -0.20 -8.84 9.04 22.40 0.20 -8.64 16 27 H 0.07 1.71 8.06 -2.39 -0.02 1.69 16 28 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 29 H 0.06 1.84 6.06 -2.39 -0.01 1.83 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.81 6.54 -2.39 -0.02 0.79 16 33 H 0.05 1.44 7.18 -2.38 -0.02 1.43 16 34 H 0.09 1.45 8.08 -2.39 -0.02 1.43 16 35 H 0.09 1.47 7.44 -2.39 -0.02 1.45 16 36 H 0.10 4.40 8.14 -2.39 -0.02 4.38 16 37 H 0.10 4.17 7.53 -2.39 -0.02 4.15 16 38 H 0.29 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.12 5.80 5.58 -2.91 -0.02 5.78 16 40 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 41 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 42 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 43 H 0.17 7.64 4.56 -59.77 -0.27 7.36 16 Total: -1.00 -66.87 348.91 7.02 -59.85 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.63 Total: 28.12 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 5.46 Total: -1.48 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: -0.75 Total: -69.47 kcal Atomic # 8 Polarization: -61.87 SS G_CDS: 0.01 Total: -61.86 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.66 Total: 44.82 kcal Total: -66.87 7.02 -59.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750943154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.900 kcal (2) G-P(sol) polarization free energy of solvation -66.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds