Wall clock time and date at job start Tue Mar 31 2020 12:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33010 * 119.99801 * 2 1 4 4 C 1.50700 * 120.00226 * 0.02562 * 3 2 1 5 5 C 1.47070 * 119.99771 * 179.97438 * 3 2 1 6 6 O 1.21631 * 119.99917 * 45.20580 * 5 3 2 7 7 N 1.34774 * 120.00244 * 225.20116 * 5 3 2 8 8 C 1.46502 * 119.99979 * 4.68682 * 7 5 3 9 9 C 1.50701 * 109.46692 * 257.01834 * 8 7 5 10 10 H 1.07996 * 120.00764 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99445 * 180.02562 * 9 8 7 12 12 N 1.31526 * 119.99661 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00376 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47222 * 90.00104 * 13 11 9 15 15 H 1.48498 * 109.47333 * 210.00030 * 13 11 9 16 16 H 1.48496 * 109.46954 * 330.00362 * 13 11 9 17 17 C 1.40005 * 120.00203 * 184.68541 * 7 5 3 18 18 C 1.38863 * 120.02609 * 187.93444 * 17 7 5 19 19 C 1.38118 * 120.04152 * 179.77127 * 18 17 7 20 20 C 1.38725 * 120.16409 * 0.25006 * 19 18 17 21 21 C 1.38998 * 119.93286 * 359.94446 * 20 19 18 22 22 C 1.38644 * 119.88585 * 0.11931 * 21 20 19 23 23 O 1.36120 * 120.78095 * 180.21294 * 21 20 19 24 24 C 1.43171 * 116.70936 * 342.70908 * 23 21 20 25 25 C 1.53470 * 108.23185 * 46.27901 * 24 23 21 26 26 O 1.36201 * 119.31442 * 179.80815 * 20 19 18 27 27 H 1.09002 * 109.47025 * 299.99544 * 1 2 3 28 28 H 1.09002 * 109.47255 * 59.99666 * 1 2 3 29 29 H 1.09003 * 109.47217 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99829 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46799 * 184.91095 * 4 3 2 32 32 H 1.09000 * 109.46629 * 304.91211 * 4 3 2 33 33 H 1.08999 * 109.47016 * 64.91879 * 4 3 2 34 34 H 1.09003 * 109.47108 * 17.01109 * 8 7 5 35 35 H 1.08998 * 109.47065 * 137.01750 * 8 7 5 36 36 H 0.97005 * 119.99536 * 179.97438 * 12 11 9 37 37 H 1.08001 * 119.97797 * 0.04825 * 18 17 7 38 38 H 1.07999 * 119.92416 * 180.26284 * 19 18 17 39 39 H 1.08008 * 119.99005 * 179.86917 * 22 21 20 40 40 H 1.09000 * 109.71011 * 286.59360 * 24 23 21 41 41 H 1.09001 * 109.71039 * 165.96689 * 24 23 21 42 42 H 1.08998 * 109.70732 * 180.53972 * 25 24 23 43 43 H 1.09007 * 109.73946 * 59.93603 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1519 0.0000 4 6 1.4185 2.4570 0.0006 5 6 3.6427 1.1519 0.0006 6 8 4.2511 0.4096 -0.7465 7 7 4.3163 1.9745 0.8288 8 6 3.5872 2.7937 1.8002 9 6 3.5155 4.2152 1.3051 10 1 3.9682 4.4820 0.3616 11 6 2.8729 5.1755 2.0573 12 7 2.8108 6.4163 1.6255 13 14 2.0905 4.7145 3.6897 14 1 3.0849 4.8813 4.7799 15 1 0.9230 5.5957 3.9456 16 1 1.6418 3.2998 3.6414 17 6 5.7129 2.0462 0.7610 18 6 6.4191 2.7636 1.7174 19 6 7.7972 2.8306 1.6535 20 6 8.4798 2.1865 0.6319 21 6 7.7755 1.4709 -0.3293 22 6 6.3921 1.4050 -0.2655 23 8 8.4279 0.8288 -1.3367 24 6 9.7810 1.2265 -1.5833 25 6 10.5115 1.3052 -0.2359 26 8 9.8385 2.2673 0.5833 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 2.0470 -0.9353 -0.0004 31 1 2.1236 3.2836 -0.0875 32 1 0.7272 2.4777 -0.8419 33 1 0.8600 2.5536 0.9316 34 1 2.5780 2.4002 1.9224 35 1 4.1056 2.7684 2.7587 36 1 2.3583 7.0919 2.1546 37 1 5.8908 3.2659 2.5143 38 1 8.3448 3.3856 2.4008 39 1 5.8430 0.8512 -1.0127 40 1 9.7948 2.2034 -2.0666 41 1 10.2692 0.4920 -2.2238 42 1 11.5440 1.6161 -0.3952 43 1 10.4922 0.3301 0.2509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751373794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:13 Heat of formation + Delta-G solvation = -43.699967 kcal Electronic energy + Delta-G solvation = -27157.459538 eV Core-core repulsion = 23362.811750 eV Total energy + Delta-G solvation = -3794.647787 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.99527 -40.06724 -37.27732 -36.91689 -35.50668 -34.84026 -32.65847 -30.73644 -30.29247 -29.01299 -28.16108 -27.53510 -25.61718 -24.38262 -23.25191 -22.23968 -21.53589 -19.81487 -18.37000 -17.75148 -17.28252 -17.12253 -16.92821 -16.06998 -15.78508 -15.16028 -14.83993 -14.73310 -14.38076 -14.18257 -14.07480 -13.66758 -13.53588 -13.22265 -12.99434 -12.74525 -12.62177 -12.44607 -12.24197 -12.10829 -11.82797 -11.67782 -11.27059 -11.16840 -10.96260 -10.91731 -10.90915 -10.62992 -10.37098 -10.29625 -9.74373 -8.99962 -8.90326 -8.79631 -8.63581 -8.00175 -7.00855 -6.30291 -4.31718 1.57358 1.81695 2.05104 3.10678 3.17170 3.18797 3.23186 3.36882 3.42783 3.69742 4.17856 4.30340 4.37395 4.85025 4.92527 4.93812 4.98425 5.05528 5.27399 5.29107 5.48215 5.50318 5.61367 5.70540 5.72385 5.77548 5.90623 6.02075 6.10807 6.18806 6.26857 6.36090 6.50091 6.56255 6.59632 6.63026 6.75722 6.83360 6.93253 7.20554 7.23564 7.29510 7.44976 7.83972 7.88529 8.27526 8.60189 8.76123 9.26159 10.81456 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012593 B = 0.004906 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.911922 B = 5705.382680 C = 7416.801832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.116 4.116 3 C -0.151 4.151 4 C -0.130 4.130 5 C 0.554 3.446 6 O -0.537 6.537 7 N -0.522 5.522 8 C 0.195 3.805 9 C -0.538 4.538 10 H 0.083 0.917 11 C 0.083 3.917 12 N -0.882 5.882 13 Si 0.864 3.136 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.262 1.262 17 C 0.180 3.820 18 C -0.131 4.131 19 C -0.093 4.093 20 C 0.010 3.990 21 C 0.064 3.936 22 C -0.166 4.166 23 O -0.307 6.307 24 C 0.021 3.979 25 C 0.023 3.977 26 O -0.312 6.312 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.034 0.966 36 H 0.268 0.732 37 H 0.144 0.856 38 H 0.132 0.868 39 H 0.185 0.815 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.515 -10.080 -1.301 11.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.136 4.136 3 C -0.154 4.154 4 C -0.186 4.186 5 C 0.346 3.654 6 O -0.418 6.418 7 N -0.240 5.240 8 C 0.075 3.925 9 C -0.576 4.576 10 H 0.101 0.899 11 C -0.121 4.121 12 N -0.519 5.519 13 Si 0.690 3.310 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.187 1.187 17 C 0.084 3.916 18 C -0.152 4.152 19 C -0.112 4.112 20 C -0.035 4.035 21 C 0.019 3.981 22 C -0.186 4.186 23 O -0.222 6.222 24 C -0.055 4.055 25 C -0.053 4.053 26 O -0.227 6.227 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.201 0.799 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.699 -10.260 -1.639 11.850 hybrid contribution -0.136 0.080 0.889 0.903 sum 5.562 -10.180 -0.750 11.624 Atomic orbital electron populations 1.20843 0.92320 1.02074 1.02509 1.23244 0.96191 0.96921 0.97217 1.21448 0.92074 0.97541 1.04308 1.21255 1.01028 0.95378 1.00945 1.18749 0.88321 0.78840 0.79464 1.90452 1.68739 1.41300 1.41338 1.45588 1.03946 1.39164 1.35299 1.20257 0.92692 0.91817 0.87715 1.21142 1.37572 0.90265 1.08597 0.89890 1.24791 0.95329 0.94639 0.97387 1.69882 1.42109 1.01503 1.38376 0.87041 0.79951 0.79258 0.84766 1.19713 1.20666 1.18695 1.17500 0.82825 0.96830 0.94420 1.20787 0.92617 1.01501 1.00260 1.20113 0.93166 1.01148 0.96821 1.18827 0.82183 1.04806 0.97710 1.18677 0.91985 0.98554 0.88874 1.21646 0.90583 1.04962 1.01439 1.86298 1.25809 1.59607 1.50457 1.23547 0.82035 1.02581 0.97331 1.23497 0.97073 0.93529 0.91239 1.86271 1.16382 1.53338 1.66732 0.91079 0.91075 0.92120 0.86853 0.86986 0.92394 0.91299 0.92726 0.94828 0.92159 0.83792 0.84970 0.79906 0.90817 0.86676 0.86761 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.15 36.01 0.33 -1.07 16 2 C -0.12 -1.74 9.85 -36.12 -0.36 -2.10 16 3 C -0.15 -2.69 4.89 -102.86 -0.50 -3.20 16 4 C -0.13 -2.30 7.27 36.01 0.26 -2.04 16 5 C 0.55 11.45 7.06 -12.68 -0.09 11.37 16 6 O -0.54 -11.81 13.44 5.25 0.07 -11.74 16 7 N -0.52 -11.05 2.73 -116.05 -0.32 -11.36 16 8 C 0.20 4.18 3.08 -5.19 -0.02 4.16 16 9 C -0.54 -13.28 7.00 -34.44 -0.24 -13.52 16 10 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 11 C 0.08 2.11 5.47 -17.81 -0.10 2.01 16 12 N -0.88 -24.34 13.96 55.43 0.77 -23.57 16 13 Si 0.86 18.67 27.47 -169.99 -4.67 14.00 16 14 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.26 -5.31 6.54 56.52 0.37 -4.94 16 17 C 0.18 3.79 6.35 -83.69 -0.53 3.26 16 18 C -0.13 -2.56 9.08 -39.39 -0.36 -2.92 16 19 C -0.09 -1.67 9.95 -39.45 -0.39 -2.06 16 20 C 0.01 0.17 6.50 -39.12 -0.25 -0.08 16 21 C 0.06 1.22 6.49 -39.15 -0.25 0.97 16 22 C -0.17 -3.46 8.89 -39.23 -0.35 -3.81 16 23 O -0.31 -5.23 10.42 -32.90 -0.34 -5.57 16 24 C 0.02 0.25 7.26 37.40 0.27 0.52 16 25 C 0.02 0.26 7.26 37.40 0.27 0.53 16 26 O -0.31 -4.91 10.42 -33.16 -0.35 -5.26 16 27 H 0.07 0.80 8.04 -51.93 -0.42 0.39 16 28 H 0.07 0.79 7.72 -51.93 -0.40 0.39 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.11 1.67 8.04 -52.49 -0.42 1.25 16 31 H 0.11 2.37 4.89 -51.93 -0.25 2.12 16 32 H 0.06 0.90 7.64 -51.93 -0.40 0.50 16 33 H 0.07 1.17 7.51 -51.93 -0.39 0.78 16 34 H 0.06 1.13 4.19 -51.93 -0.22 0.91 16 35 H 0.03 0.70 6.07 -51.93 -0.32 0.39 16 36 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.14 2.80 6.21 -52.49 -0.33 2.47 16 38 H 0.13 2.05 8.06 -52.49 -0.42 1.62 16 39 H 0.18 4.06 4.70 -55.30 -0.26 3.80 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 LS Contribution 344.88 15.07 5.20 5.20 Total: -1.00 -29.85 344.88 -7.47 -37.32 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.53 Total: 8.98 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -2.31 Total: -7.99 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.46 Total: -34.93 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.62 Total: -22.57 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.67 Total: 14.00 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.85 -7.47 -37.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751373794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.383 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds