Wall clock time and date at job start Tue Mar 31 2020 12:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33010 * 119.99801 * 2 1 4 4 C 1.50700 * 120.00226 * 0.02562 * 3 2 1 5 5 C 1.47070 * 119.99771 * 179.97438 * 3 2 1 6 6 O 1.21631 * 119.99917 * 45.20580 * 5 3 2 7 7 N 1.34774 * 120.00244 * 225.20116 * 5 3 2 8 8 C 1.46502 * 119.99979 * 4.68682 * 7 5 3 9 9 C 1.50701 * 109.46692 * 257.01834 * 8 7 5 10 10 H 1.07996 * 120.00764 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99445 * 180.02562 * 9 8 7 12 12 N 1.31526 * 119.99661 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00376 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47222 * 90.00104 * 13 11 9 15 15 H 1.48498 * 109.47333 * 210.00030 * 13 11 9 16 16 H 1.48496 * 109.46954 * 330.00362 * 13 11 9 17 17 C 1.40005 * 120.00203 * 184.68541 * 7 5 3 18 18 C 1.38863 * 120.02609 * 187.93444 * 17 7 5 19 19 C 1.38118 * 120.04152 * 179.77127 * 18 17 7 20 20 C 1.38725 * 120.16409 * 0.25006 * 19 18 17 21 21 C 1.38998 * 119.93286 * 359.94446 * 20 19 18 22 22 C 1.38644 * 119.88585 * 0.11931 * 21 20 19 23 23 O 1.36120 * 120.78095 * 180.21294 * 21 20 19 24 24 C 1.43171 * 116.70936 * 342.70908 * 23 21 20 25 25 C 1.53470 * 108.23185 * 46.27901 * 24 23 21 26 26 O 1.36201 * 119.31442 * 179.80815 * 20 19 18 27 27 H 1.09002 * 109.47025 * 299.99544 * 1 2 3 28 28 H 1.09002 * 109.47255 * 59.99666 * 1 2 3 29 29 H 1.09003 * 109.47217 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99829 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46799 * 184.91095 * 4 3 2 32 32 H 1.09000 * 109.46629 * 304.91211 * 4 3 2 33 33 H 1.08999 * 109.47016 * 64.91879 * 4 3 2 34 34 H 1.09003 * 109.47108 * 17.01109 * 8 7 5 35 35 H 1.08998 * 109.47065 * 137.01750 * 8 7 5 36 36 H 0.97005 * 119.99536 * 179.97438 * 12 11 9 37 37 H 1.08001 * 119.97797 * 0.04825 * 18 17 7 38 38 H 1.07999 * 119.92416 * 180.26284 * 19 18 17 39 39 H 1.08008 * 119.99005 * 179.86917 * 22 21 20 40 40 H 1.09000 * 109.71011 * 286.59360 * 24 23 21 41 41 H 1.09001 * 109.71039 * 165.96689 * 24 23 21 42 42 H 1.08998 * 109.70732 * 180.53972 * 25 24 23 43 43 H 1.09007 * 109.73946 * 59.93603 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1519 0.0000 4 6 1.4185 2.4570 0.0006 5 6 3.6427 1.1519 0.0006 6 8 4.2511 0.4096 -0.7465 7 7 4.3163 1.9745 0.8288 8 6 3.5872 2.7937 1.8002 9 6 3.5155 4.2152 1.3051 10 1 3.9682 4.4820 0.3616 11 6 2.8729 5.1755 2.0573 12 7 2.8108 6.4163 1.6255 13 14 2.0905 4.7145 3.6897 14 1 3.0849 4.8813 4.7799 15 1 0.9230 5.5957 3.9456 16 1 1.6418 3.2998 3.6414 17 6 5.7129 2.0462 0.7610 18 6 6.4191 2.7636 1.7174 19 6 7.7972 2.8306 1.6535 20 6 8.4798 2.1865 0.6319 21 6 7.7755 1.4709 -0.3293 22 6 6.3921 1.4050 -0.2655 23 8 8.4279 0.8288 -1.3367 24 6 9.7810 1.2265 -1.5833 25 6 10.5115 1.3052 -0.2359 26 8 9.8385 2.2673 0.5833 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 2.0470 -0.9353 -0.0004 31 1 2.1236 3.2836 -0.0875 32 1 0.7272 2.4777 -0.8419 33 1 0.8600 2.5536 0.9316 34 1 2.5780 2.4002 1.9224 35 1 4.1056 2.7684 2.7587 36 1 2.3583 7.0919 2.1546 37 1 5.8908 3.2659 2.5143 38 1 8.3448 3.3856 2.4008 39 1 5.8430 0.8512 -1.0127 40 1 9.7948 2.2034 -2.0666 41 1 10.2692 0.4920 -2.2238 42 1 11.5440 1.6161 -0.3952 43 1 10.4922 0.3301 0.2509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751373794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:12 Heat of formation + Delta-G solvation = -61.753959 kcal Electronic energy + Delta-G solvation = -27158.242418 eV Core-core repulsion = 23362.811750 eV Total energy + Delta-G solvation = -3795.430667 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.36457 -41.52197 -38.71813 -38.17333 -37.05638 -36.21097 -34.55484 -31.92902 -31.77543 -30.21657 -29.88629 -28.89338 -26.93052 -25.64152 -24.86396 -23.85093 -22.85813 -21.15382 -19.66890 -19.22637 -19.08856 -18.60706 -18.26519 -17.46910 -17.15898 -16.59572 -16.38516 -15.97144 -15.84211 -15.67548 -15.34037 -15.03856 -14.80400 -14.68671 -14.50046 -14.08046 -14.02946 -13.82067 -13.72023 -13.29669 -13.25524 -13.10621 -12.76509 -12.61267 -12.54900 -12.21039 -12.13969 -11.97888 -11.91845 -11.67796 -11.57948 -10.75197 -10.56666 -10.41355 -9.94098 -9.47995 -8.51867 -8.26656 -6.32391 0.11239 0.31496 0.68978 1.41639 1.43808 1.52079 1.81160 1.94084 2.15023 2.35801 2.39856 2.79029 3.06054 3.34168 3.52797 3.74579 3.96834 4.08708 4.09745 4.16160 4.26717 4.35364 4.37135 4.47592 4.57421 4.59834 4.60540 4.69759 4.76919 4.89233 4.95430 5.00405 5.01201 5.07572 5.13539 5.27618 5.33208 5.40220 5.42814 5.55628 5.82379 5.92189 5.93520 6.12039 6.47278 6.48018 6.68837 7.02671 7.29026 8.89129 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012593 B = 0.004906 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.911922 B = 5705.382680 C = 7416.801832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 C -0.190 4.190 4 C -0.117 4.117 5 C 0.545 3.455 6 O -0.561 6.561 7 N -0.529 5.529 8 C 0.205 3.795 9 C -0.522 4.522 10 H 0.030 0.970 11 C 0.033 3.967 12 N -0.935 5.935 13 Si 0.927 3.073 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.234 1.234 17 C 0.156 3.844 18 C -0.143 4.143 19 C -0.091 4.091 20 C 0.014 3.986 21 C 0.063 3.937 22 C -0.188 4.188 23 O -0.325 6.325 24 C 0.011 3.989 25 C 0.017 3.983 26 O -0.319 6.319 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.269 0.731 37 H 0.142 0.858 38 H 0.158 0.842 39 H 0.166 0.834 40 H 0.075 0.925 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.675 -11.960 -0.190 13.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 C -0.193 4.193 4 C -0.173 4.173 5 C 0.339 3.661 6 O -0.444 6.444 7 N -0.247 5.247 8 C 0.085 3.915 9 C -0.561 4.561 10 H 0.048 0.952 11 C -0.167 4.167 12 N -0.574 5.574 13 Si 0.750 3.250 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.157 1.157 17 C 0.060 3.940 18 C -0.163 4.163 19 C -0.110 4.110 20 C -0.031 4.031 21 C 0.017 3.983 22 C -0.208 4.208 23 O -0.241 6.241 24 C -0.064 4.064 25 C -0.058 4.058 26 O -0.234 6.234 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.159 0.841 38 H 0.176 0.824 39 H 0.183 0.817 40 H 0.093 0.907 41 H 0.174 0.826 42 H 0.176 0.824 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.885 -12.168 -0.541 13.527 hybrid contribution -0.003 0.576 0.353 0.676 sum 5.882 -11.592 -0.187 13.000 Atomic orbital electron populations 1.20974 0.89300 1.04181 1.03342 1.23627 0.98243 0.95766 0.92270 1.21335 0.90355 0.98601 1.09024 1.21046 1.00244 0.93838 1.02207 1.19339 0.89670 0.78301 0.78823 1.90432 1.69591 1.42308 1.42024 1.45644 1.04196 1.39307 1.35571 1.20103 0.93668 0.89766 0.87977 1.21041 1.36397 0.92229 1.06395 0.95216 1.25569 0.95814 0.94150 1.01190 1.70038 1.43999 1.02999 1.40386 0.86019 0.78905 0.80381 0.79723 1.19116 1.20786 1.15717 1.17773 0.83078 0.97845 0.95274 1.20839 0.93530 1.01793 1.00170 1.20394 0.92642 1.00680 0.97275 1.18860 0.83502 1.03744 0.96999 1.18696 0.91617 0.98362 0.89625 1.21545 0.91743 1.06006 1.01523 1.86268 1.28430 1.59604 1.49750 1.24017 0.79738 1.04116 0.98497 1.23934 0.98471 0.93356 0.90049 1.86259 1.14790 1.54742 1.67658 0.90004 0.90081 0.89523 0.86649 0.91138 0.90519 0.90503 0.91205 0.93737 0.92167 0.84069 0.82446 0.81711 0.90695 0.82581 0.82385 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 9.15 71.24 0.65 -1.73 16 2 C -0.08 -2.23 9.85 24.52 0.24 -1.99 16 3 C -0.19 -6.75 4.89 -18.71 -0.09 -6.84 16 4 C -0.12 -4.13 7.27 71.24 0.52 -3.62 16 5 C 0.54 23.34 7.06 86.56 0.61 23.95 16 6 O -0.56 -25.80 13.44 -4.13 -0.06 -25.85 16 7 N -0.53 -23.33 2.73 -639.33 -1.74 -25.07 16 8 C 0.21 8.91 3.08 85.63 0.26 9.17 16 9 C -0.52 -26.93 7.00 25.60 0.18 -26.75 16 10 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 11 C 0.03 1.69 5.47 84.65 0.46 2.16 16 12 N -0.94 -53.64 13.96 21.45 0.30 -53.34 16 13 Si 0.93 38.02 27.47 68.60 1.88 39.90 16 14 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 15 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 16 H -0.23 -8.47 6.54 99.48 0.65 -7.82 16 17 C 0.16 6.87 6.35 38.12 0.24 7.12 16 18 C -0.14 -5.75 9.08 22.39 0.20 -5.55 16 19 C -0.09 -3.24 9.95 22.36 0.22 -3.02 16 20 C 0.01 0.51 6.50 22.57 0.15 0.66 16 21 C 0.06 2.43 6.49 22.55 0.15 2.57 16 22 C -0.19 -8.24 8.89 22.50 0.20 -8.04 16 23 O -0.33 -11.00 10.42 -82.70 -0.86 -11.86 16 24 C 0.01 0.23 7.26 72.14 0.52 0.76 16 25 C 0.02 0.33 7.26 72.14 0.52 0.85 16 26 O -0.32 -9.42 10.42 -83.63 -0.87 -10.29 16 27 H 0.08 1.52 8.04 -2.39 -0.02 1.50 16 28 H 0.08 1.51 7.72 -2.39 -0.02 1.49 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.12 3.19 8.04 -2.91 -0.02 3.17 16 31 H 0.07 3.11 4.89 -2.39 -0.01 3.10 16 32 H 0.08 2.33 7.64 -2.39 -0.02 2.31 16 33 H 0.08 2.50 7.51 -2.39 -0.02 2.49 16 34 H 0.07 2.83 4.19 -2.39 -0.01 2.82 16 35 H 0.04 1.84 6.07 -2.39 -0.01 1.83 16 36 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 37 H 0.14 5.63 6.21 -2.91 -0.02 5.62 16 38 H 0.16 4.68 8.06 -2.91 -0.02 4.66 16 39 H 0.17 7.83 4.70 -47.56 -0.22 7.61 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.16 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -69.87 344.88 4.47 -65.40 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.78 Total: 31.42 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 5.05 Total: -10.30 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.44 Total: -78.41 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -1.79 Total: -48.00 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 1.88 Total: 39.90 kcal Total: -69.87 4.47 -65.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751373794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.643 kcal (2) G-P(sol) polarization free energy of solvation -69.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds