Wall clock time and date at job start Tue Mar 31 2020 12:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99738 * 2 1 4 4 H 1.09002 * 109.47481 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.47210 * 240.00065 * 3 2 1 6 6 C 1.50697 * 109.47491 * 64.99840 * 5 3 2 7 7 O 1.20833 * 119.99747 * 0.02562 * 6 5 3 8 8 O 1.34230 * 120.00262 * 179.72204 * 6 5 3 9 9 C 1.45202 * 116.99836 * 180.27336 * 8 6 5 10 10 C 1.50701 * 109.46859 * 180.02562 * 9 8 6 11 11 O 1.21275 * 120.00011 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99566 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99590 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.46913 * 179.97438 * 13 12 10 15 15 H 1.08003 * 120.00086 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00005 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99826 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00244 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47407 * 89.99917 * 18 16 14 20 20 H 1.48493 * 109.47342 * 210.00108 * 18 16 14 21 21 H 1.48508 * 109.46837 * 329.99792 * 18 16 14 22 22 C 1.50700 * 109.47306 * 119.99872 * 3 2 1 23 23 C 1.38239 * 119.99672 * 59.72478 * 22 3 2 24 24 C 1.38236 * 119.99834 * 179.79266 * 23 22 3 25 25 C 1.38233 * 120.00025 * 0.43708 * 24 23 22 26 26 C 1.38238 * 119.99947 * 359.81979 * 25 24 23 27 27 C 1.38231 * 120.00195 * 239.99991 * 22 3 2 28 28 H 1.07994 * 120.00292 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99830 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.00292 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47066 * 305.00041 * 5 3 2 32 32 H 1.09000 * 109.47234 * 185.00549 * 5 3 2 33 33 H 1.08998 * 109.47630 * 300.00638 * 9 8 6 34 34 H 1.09004 * 109.46770 * 60.01042 * 9 8 6 35 35 H 0.97001 * 120.00823 * 359.97438 * 12 10 9 36 36 H 1.08998 * 109.47163 * 299.99808 * 13 12 10 37 37 H 1.09004 * 109.46912 * 60.00013 * 13 12 10 38 38 H 0.97002 * 119.99990 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.00110 * 359.97438 * 23 22 3 40 40 H 1.07996 * 119.99964 * 180.27585 * 24 23 22 41 41 H 1.08002 * 120.00583 * 179.83601 * 25 24 23 42 42 H 1.08002 * 120.00340 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.00345 * 359.97438 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3862 -1.2492 6 6 2.0698 1.4300 -2.4766 7 8 0.8671 1.4000 -2.3637 8 8 2.6277 1.5086 -3.6949 9 6 1.7253 1.5531 -4.8316 10 6 2.5260 1.6390 -6.1054 11 8 3.7377 1.6601 -6.0598 12 7 1.8953 1.6923 -7.2953 13 6 2.6736 1.7753 -8.5337 14 6 1.7371 1.8215 -9.7135 15 1 0.6689 1.7925 -9.5564 16 6 2.2438 1.9020 -10.9933 17 7 3.5445 1.9378 -11.1844 18 14 1.0830 1.9601 -12.4556 19 1 0.7481 3.3731 -12.7660 20 1 1.7385 1.3366 -13.6331 21 1 -0.1607 1.2166 -12.1301 22 6 2.9298 1.3850 1.2305 23 6 3.9053 0.4309 1.4521 24 6 4.7029 0.5066 2.5786 25 6 4.5191 1.5313 3.4880 26 6 3.5401 2.4824 3.2691 27 6 2.7454 2.4092 2.1404 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 3.5905 0.5106 -1.2951 32 1 3.5540 2.2879 -1.2055 33 1 1.1150 0.6501 -4.8466 34 1 1.0792 2.4271 -4.7485 35 1 0.9261 1.6750 -7.3319 36 1 3.2848 2.6776 -8.5190 37 1 3.3189 0.9006 -8.6166 38 1 3.9010 1.9941 -12.0848 39 1 4.0461 -0.3720 0.7437 40 1 5.4679 -0.2363 2.7495 41 1 5.1404 1.5890 4.3695 42 1 3.3967 3.2832 3.9794 43 1 1.9806 3.1523 1.9693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758920282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:37 Heat of formation + Delta-G solvation = -105.915203 kcal Electronic energy + Delta-G solvation = -24700.491943 eV Core-core repulsion = 20903.146301 eV Total energy + Delta-G solvation = -3797.345642 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80118 -40.57642 -40.11931 -37.80377 -36.44076 -36.17711 -34.42204 -32.44843 -31.76339 -31.32429 -30.35679 -28.45373 -25.93998 -24.57147 -23.56680 -22.43493 -21.99229 -21.64032 -20.28812 -19.23786 -18.89061 -17.94165 -17.85979 -17.64330 -17.02472 -16.85924 -16.38596 -16.16693 -15.87727 -15.72359 -15.29430 -14.94609 -14.64739 -14.40111 -14.19753 -14.08538 -14.03459 -13.74327 -13.60685 -13.42299 -12.95997 -12.94203 -12.72063 -12.62406 -12.23499 -12.18892 -11.86485 -11.86357 -11.64872 -11.51973 -11.49613 -10.91456 -10.82263 -10.18830 -9.93649 -9.76683 -9.58947 -8.30073 -6.46760 0.44051 0.55319 1.15608 1.31991 1.44753 1.46028 1.49689 1.55476 1.57607 2.34105 2.58605 2.93039 3.05116 3.59202 3.66230 3.73418 3.91695 4.02985 4.07262 4.10637 4.18225 4.25970 4.32000 4.36524 4.43156 4.64129 4.65919 4.74666 4.93487 5.06398 5.07508 5.14561 5.21187 5.22105 5.33898 5.41641 5.61847 5.62747 5.68421 5.73069 5.76648 5.81560 5.95069 6.16341 6.61565 6.65095 6.79401 7.20018 7.35425 8.82002 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031497 B = 0.001908 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.762830 B =14672.308614 C =15182.601289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.162 4.162 3 C 0.002 3.998 4 H 0.085 0.915 5 C -0.099 4.099 6 C 0.461 3.539 7 O -0.515 6.515 8 O -0.352 6.352 9 C 0.062 3.938 10 C 0.498 3.502 11 O -0.584 6.584 12 N -0.699 5.699 13 C 0.266 3.734 14 C -0.558 4.558 15 H 0.086 0.914 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.986 3.014 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.256 1.256 22 C -0.081 4.081 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.131 4.131 26 C -0.127 4.127 27 C -0.126 4.126 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.412 0.588 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.269 0.731 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 -2.030 29.971 30.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C -0.017 4.017 4 H 0.104 0.896 5 C -0.137 4.137 6 C 0.305 3.695 7 O -0.404 6.404 8 O -0.268 6.268 9 C -0.015 4.015 10 C 0.284 3.716 11 O -0.465 6.465 12 N -0.351 5.351 13 C 0.144 3.856 14 C -0.596 4.596 15 H 0.104 0.896 16 C -0.196 4.196 17 N -0.568 5.568 18 Si 0.809 3.191 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.179 1.179 22 C -0.081 4.081 23 C -0.139 4.139 24 C -0.145 4.145 25 C -0.148 4.148 26 C -0.145 4.145 27 C -0.144 4.144 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.134 0.866 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.249 0.751 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.078 0.922 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.873 -2.011 29.856 30.173 hybrid contribution -0.599 0.051 -1.160 1.307 sum -4.472 -1.960 28.696 29.109 Atomic orbital electron populations 1.23853 0.96056 1.01897 0.98623 1.22806 0.96117 0.97273 1.01805 1.19047 0.95100 0.97623 0.89915 0.89639 1.21552 0.97736 1.07730 0.86634 1.24287 0.88749 0.71793 0.84652 1.90667 1.16685 1.45945 1.87071 1.86574 1.41203 1.83755 1.15301 1.22680 0.90775 1.06839 0.81194 1.20753 0.88258 0.76749 0.85809 1.90681 1.16289 1.51612 1.87913 1.46054 1.11330 1.72324 1.05373 1.18628 0.91593 0.94514 0.80882 1.21616 0.94101 1.52887 0.90948 0.89599 1.26060 0.97030 0.93850 1.02632 1.70131 1.13676 1.49657 1.23329 0.85141 0.78379 0.78662 0.76939 1.19641 1.20998 1.17944 1.19665 0.96726 0.96004 0.95743 1.21233 0.95492 0.98866 0.98313 1.21438 0.99685 0.98983 0.94396 1.21481 0.98454 0.94884 1.00026 1.21415 0.95822 0.99611 0.97645 1.21283 1.00186 0.98240 0.94671 0.88991 0.87920 0.86566 0.85805 0.85976 0.86030 0.85986 0.75148 0.98988 0.98972 0.92195 0.85009 0.84446 0.84402 0.84439 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 13.23 67.78 0.90 -2.09 16 2 C -0.16 -2.75 7.40 25.64 0.19 -2.56 16 3 C 0.00 0.03 1.99 -12.29 -0.02 0.00 16 4 H 0.09 1.48 7.33 -2.39 -0.02 1.46 16 5 C -0.10 -1.69 5.02 29.85 0.15 -1.54 16 6 C 0.46 11.10 7.71 71.23 0.55 11.65 16 7 O -0.52 -13.53 13.93 21.94 0.31 -13.22 16 8 O -0.35 -10.53 9.75 -45.06 -0.44 -10.97 16 9 C 0.06 1.77 5.94 71.24 0.42 2.20 16 10 C 0.50 20.02 7.91 87.66 0.69 20.72 16 11 O -0.58 -29.50 16.50 15.79 0.26 -29.24 16 12 N -0.70 -28.94 5.55 -466.78 -2.59 -31.53 16 13 C 0.27 14.40 5.43 85.63 0.46 14.87 16 14 C -0.56 -29.86 9.28 25.60 0.24 -29.62 16 15 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 16 C 0.00 0.23 5.46 84.66 0.46 0.69 16 17 N -0.93 -55.50 13.29 21.45 0.28 -55.21 16 18 Si 0.99 41.83 29.54 68.60 2.03 43.86 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 20 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 22 C -0.08 -1.23 4.77 -19.87 -0.09 -1.32 16 23 C -0.12 -1.68 8.86 22.27 0.20 -1.49 16 24 C -0.13 -1.61 10.05 22.27 0.22 -1.38 16 25 C -0.13 -1.58 10.05 22.27 0.22 -1.36 16 26 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 27 C -0.13 -1.81 9.67 22.27 0.22 -1.60 16 28 H 0.09 1.72 7.83 -2.91 -0.02 1.70 16 29 H 0.10 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.12 1.73 8.00 -2.91 -0.02 1.70 16 31 H 0.12 1.77 7.59 -2.38 -0.02 1.75 16 32 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.12 2.90 8.13 -2.39 -0.02 2.88 16 34 H 0.12 2.90 8.13 -2.38 -0.02 2.88 16 35 H 0.41 13.72 8.32 -92.71 -0.77 12.95 16 36 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 38 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.13 1.49 7.60 -2.91 -0.02 1.47 16 40 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 42 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 43 H 0.13 1.56 7.95 -2.91 -0.02 1.54 16 Total: -1.00 -74.25 376.12 5.12 -69.13 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.24 Total: 21.41 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 5.03 Total: 5.77 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -2.30 Total: -86.74 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: 0.13 Total: -53.43 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -74.25 5.12 -69.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758920282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.783 kcal (2) G-P(sol) polarization free energy of solvation -74.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds