Wall clock time and date at job start Tue Mar 31 2020 12:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 H 1.09004 * 109.46982 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47092 * 119.99886 * 3 2 1 6 6 C 1.50702 * 109.47223 * 295.00184 * 5 3 2 7 7 O 1.20818 * 119.99740 * 359.97438 * 6 5 3 8 8 O 1.34227 * 119.99751 * 180.02562 * 6 5 3 9 9 C 1.45202 * 116.99928 * 180.02562 * 8 6 5 10 10 C 1.50695 * 109.47395 * 179.97438 * 9 8 6 11 11 O 1.21284 * 120.00046 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00022 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99602 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.46573 * 180.02562 * 13 12 10 15 15 H 1.07994 * 120.00528 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99766 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99885 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99944 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47215 * 60.00281 * 18 16 14 20 20 H 1.48505 * 109.46933 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47121 * 299.99814 * 18 16 14 22 22 C 1.50701 * 109.47171 * 239.99998 * 3 2 1 23 23 C 1.38229 * 120.00208 * 299.72786 * 22 3 2 24 24 C 1.38227 * 120.00198 * 179.81014 * 23 22 3 25 25 C 1.38241 * 120.00120 * 0.39876 * 24 23 22 26 26 C 1.38229 * 119.99709 * 359.85188 * 25 24 23 27 27 C 1.38236 * 120.00089 * 359.95829 * 26 25 24 28 28 H 1.07999 * 120.00108 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99390 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.00080 * 179.72973 * 2 1 3 31 31 H 1.09002 * 109.46670 * 55.00171 * 5 3 2 32 32 H 1.09004 * 109.47007 * 174.99965 * 5 3 2 33 33 H 1.09000 * 109.46974 * 300.00236 * 9 8 6 34 34 H 1.08998 * 109.46825 * 59.99644 * 9 8 6 35 35 H 0.96991 * 120.00155 * 0.02562 * 12 10 9 36 36 H 1.09003 * 109.46994 * 299.99243 * 13 12 10 37 37 H 1.08998 * 109.47739 * 60.00123 * 13 12 10 38 38 H 0.97007 * 119.99715 * 179.97438 * 17 16 14 39 39 H 1.08003 * 119.99682 * 359.97438 * 23 22 3 40 40 H 1.08003 * 120.00232 * 180.22779 * 24 23 22 41 41 H 1.07996 * 119.99907 * 179.83697 * 25 24 23 42 42 H 1.07997 * 120.00236 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.00174 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0697 1.4300 2.4766 7 8 0.8672 1.4000 2.3637 8 8 2.6278 1.5034 3.6951 9 6 1.7256 1.5415 4.8322 10 6 2.5263 1.6223 6.1063 11 8 3.7380 1.6459 6.0606 12 7 1.8958 1.6693 7.2966 13 6 2.6742 1.7484 8.5351 14 6 1.7378 1.7878 9.7152 15 1 0.6697 1.7574 9.5584 16 6 2.2446 1.8626 10.9953 17 7 3.5453 1.8991 11.1864 18 14 1.0839 1.9121 12.4580 19 1 0.2531 0.6814 12.4726 20 1 1.8729 1.9922 13.7136 21 1 0.2030 3.1028 12.3508 22 6 2.9299 1.3850 -1.2305 23 6 3.9128 0.4373 -1.4464 24 6 4.7049 0.5083 -2.5770 25 6 4.5196 1.5318 -3.4877 26 6 3.5402 2.4824 -3.2691 27 6 2.7454 2.4091 -2.1404 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9354 -0.0004 30 1 1.8500 -0.9352 0.0044 31 1 3.5906 0.5105 1.2951 32 1 3.5540 2.2879 1.2056 33 1 1.0784 2.4150 4.7533 34 1 1.1164 0.6377 4.8430 35 1 0.9267 1.6507 7.3331 36 1 3.3211 0.8746 8.6142 37 1 3.2838 2.6519 8.5242 38 1 3.9019 1.9521 12.0870 39 1 4.0601 -0.3601 -0.7331 40 1 5.4704 -0.2342 -2.7476 41 1 5.1402 1.5887 -4.3696 42 1 3.3956 3.2822 -3.9803 43 1 1.9804 3.1521 -1.9694 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758920285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:41 Heat of formation + Delta-G solvation = -86.698880 kcal Electronic energy + Delta-G solvation = -24700.353654 eV Core-core repulsion = 20903.841294 eV Total energy + Delta-G solvation = -3796.512360 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.76123 -39.71506 -38.71282 -36.77864 -35.61123 -34.25191 -32.41871 -31.76448 -31.24033 -30.42924 -28.96961 -26.73012 -25.11102 -23.03827 -22.63413 -21.77362 -21.03758 -19.94049 -19.58541 -18.00421 -17.47027 -17.07854 -16.74596 -16.28828 -15.64644 -15.43057 -15.25744 -15.07386 -14.80933 -14.65076 -14.09451 -14.03509 -13.66896 -13.56663 -13.16332 -12.93707 -12.82373 -12.44806 -12.23057 -12.01264 -11.95622 -11.75310 -11.61371 -11.27117 -11.04154 -10.97971 -10.91132 -10.67827 -10.57518 -10.35310 -9.48453 -9.46364 -9.23433 -9.17757 -9.03112 -8.78569 -7.99540 -6.20173 -4.27780 0.99735 1.08573 2.12673 2.22234 2.45147 3.17655 3.23716 3.28614 3.30054 3.47010 3.95878 4.30915 4.32780 4.46880 4.61876 4.67392 4.69964 4.80830 4.87444 5.00098 5.10754 5.15753 5.16027 5.19023 5.24894 5.29671 5.34561 5.36500 5.57740 5.64997 5.72895 5.78117 6.14010 6.20135 6.28885 6.38340 6.46610 6.63593 6.68619 7.21833 7.30228 7.45009 7.58620 7.71663 7.91303 8.49356 8.70357 8.95852 9.38561 10.89861 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031516 B = 0.001908 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.228669 B =14669.870760 C =15180.961448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.159 4.159 3 C -0.006 4.006 4 H 0.092 0.908 5 C -0.103 4.103 6 C 0.460 3.540 7 O -0.504 6.504 8 O -0.331 6.331 9 C 0.050 3.950 10 C 0.499 3.501 11 O -0.535 6.535 12 N -0.707 5.707 13 C 0.251 3.749 14 C -0.546 4.546 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.906 3.094 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.072 4.072 23 C -0.111 4.111 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.113 4.113 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.393 0.607 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.267 0.733 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.856 -1.746 -28.995 29.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.177 4.177 3 C -0.025 4.025 4 H 0.110 0.890 5 C -0.141 4.141 6 C 0.302 3.698 7 O -0.392 6.392 8 O -0.246 6.246 9 C -0.028 4.028 10 C 0.282 3.718 11 O -0.412 6.412 12 N -0.357 5.357 13 C 0.131 3.869 14 C -0.585 4.585 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.733 3.267 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.072 4.072 23 C -0.129 4.129 24 C -0.136 4.136 25 C -0.142 4.142 26 C -0.137 4.137 27 C -0.131 4.131 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.226 0.774 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.177 -1.721 -28.835 28.968 hybrid contribution -1.171 -0.023 0.970 1.521 sum -3.348 -1.744 -27.865 28.119 Atomic orbital electron populations 1.23768 0.95762 1.01739 0.98063 1.22631 0.96044 0.96668 1.02327 1.19143 0.95315 0.98061 0.89938 0.88968 1.21425 0.97922 1.06508 0.88237 1.23680 0.88456 0.72636 0.84986 1.90667 1.16047 1.45297 1.87154 1.86568 1.40379 1.83233 1.14395 1.22833 0.91873 1.04428 0.83648 1.19918 0.88562 0.78759 0.84578 1.90709 1.13742 1.49656 1.87094 1.46368 1.10652 1.72268 1.06423 1.19170 0.91628 0.97941 0.78145 1.21174 0.93069 1.53479 0.90737 0.91814 1.24956 0.95346 0.94608 0.99080 1.69968 1.11246 1.48447 1.22508 0.86441 0.80399 0.78714 0.81158 1.20038 1.21034 1.20043 1.19682 0.96284 0.95440 0.95819 1.21044 0.95425 0.98736 0.97736 1.21163 0.99469 0.98483 0.94499 1.21171 0.98398 0.95151 0.99472 1.21141 0.95976 0.99051 0.97526 1.21083 0.99702 0.97954 0.94358 0.88388 0.88688 0.87459 0.87263 0.87107 0.88601 0.88609 0.77446 0.95265 0.95259 0.92311 0.85903 0.86011 0.86199 0.86071 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 13.23 29.01 0.38 -1.08 16 2 C -0.16 -1.44 7.42 -36.03 -0.27 -1.71 16 3 C -0.01 -0.05 1.99 -92.92 -0.18 -0.24 16 4 H 0.09 0.83 7.33 -51.93 -0.38 0.45 16 5 C -0.10 -0.96 5.01 -27.88 -0.14 -1.10 16 6 C 0.46 5.87 7.71 36.01 0.28 6.15 16 7 O -0.50 -7.03 13.92 -18.74 -0.26 -7.29 16 8 O -0.33 -5.13 9.76 -45.89 -0.45 -5.58 16 9 C 0.05 0.75 5.94 36.00 0.21 0.97 16 10 C 0.50 10.01 7.91 -10.99 -0.09 9.93 16 11 O -0.53 -13.10 16.50 -14.11 -0.23 -13.34 16 12 N -0.71 -14.63 5.55 -61.47 -0.34 -14.97 16 13 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 14 C -0.55 -14.63 9.28 -34.44 -0.32 -14.95 16 15 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -25.81 13.29 55.43 0.74 -25.08 16 18 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 C -0.07 -0.59 4.77 -104.62 -0.50 -1.09 16 23 C -0.11 -0.85 8.87 -39.59 -0.35 -1.21 16 24 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 25 C -0.12 -0.86 10.05 -39.58 -0.40 -1.25 16 26 C -0.12 -0.84 10.05 -39.59 -0.40 -1.24 16 27 C -0.11 -0.87 9.67 -39.58 -0.38 -1.26 16 28 H 0.10 0.94 7.83 -52.49 -0.41 0.53 16 29 H 0.09 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.11 0.87 7.55 -51.93 -0.39 0.48 16 32 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 34 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 35 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 36 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.12 0.79 7.62 -52.48 -0.40 0.39 16 40 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 41 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.12 0.79 7.95 -52.49 -0.42 0.37 16 LS Contribution 376.19 15.07 5.67 5.67 Total: -1.00 -33.59 376.19 -8.67 -42.27 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.10 Total: 3.80 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.67 Total: -1.11 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.40 Total: -40.05 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.94 Total: -26.21 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.59 -8.67 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758920285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.431 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds