Wall clock time and date at job start Tue Mar 31 2020 12:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 H 1.09004 * 109.46982 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47092 * 119.99886 * 3 2 1 6 6 C 1.50702 * 109.47223 * 295.00184 * 5 3 2 7 7 O 1.20818 * 119.99740 * 359.97438 * 6 5 3 8 8 O 1.34227 * 119.99751 * 180.02562 * 6 5 3 9 9 C 1.45202 * 116.99928 * 180.02562 * 8 6 5 10 10 C 1.50695 * 109.47395 * 179.97438 * 9 8 6 11 11 O 1.21284 * 120.00046 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00022 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99602 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.46573 * 180.02562 * 13 12 10 15 15 H 1.07994 * 120.00528 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99766 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99885 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99944 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47215 * 60.00281 * 18 16 14 20 20 H 1.48505 * 109.46933 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47121 * 299.99814 * 18 16 14 22 22 C 1.50701 * 109.47171 * 239.99998 * 3 2 1 23 23 C 1.38229 * 120.00208 * 299.72786 * 22 3 2 24 24 C 1.38227 * 120.00198 * 179.81014 * 23 22 3 25 25 C 1.38241 * 120.00120 * 0.39876 * 24 23 22 26 26 C 1.38229 * 119.99709 * 359.85188 * 25 24 23 27 27 C 1.38236 * 120.00089 * 359.95829 * 26 25 24 28 28 H 1.07999 * 120.00108 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99390 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.00080 * 179.72973 * 2 1 3 31 31 H 1.09002 * 109.46670 * 55.00171 * 5 3 2 32 32 H 1.09004 * 109.47007 * 174.99965 * 5 3 2 33 33 H 1.09000 * 109.46974 * 300.00236 * 9 8 6 34 34 H 1.08998 * 109.46825 * 59.99644 * 9 8 6 35 35 H 0.96991 * 120.00155 * 0.02562 * 12 10 9 36 36 H 1.09003 * 109.46994 * 299.99243 * 13 12 10 37 37 H 1.08998 * 109.47739 * 60.00123 * 13 12 10 38 38 H 0.97007 * 119.99715 * 179.97438 * 17 16 14 39 39 H 1.08003 * 119.99682 * 359.97438 * 23 22 3 40 40 H 1.08003 * 120.00232 * 180.22779 * 24 23 22 41 41 H 1.07996 * 119.99907 * 179.83697 * 25 24 23 42 42 H 1.07997 * 120.00236 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.00174 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0697 1.4300 2.4766 7 8 0.8672 1.4000 2.3637 8 8 2.6278 1.5034 3.6951 9 6 1.7256 1.5415 4.8322 10 6 2.5263 1.6223 6.1063 11 8 3.7380 1.6459 6.0606 12 7 1.8958 1.6693 7.2966 13 6 2.6742 1.7484 8.5351 14 6 1.7378 1.7878 9.7152 15 1 0.6697 1.7574 9.5584 16 6 2.2446 1.8626 10.9953 17 7 3.5453 1.8991 11.1864 18 14 1.0839 1.9121 12.4580 19 1 0.2531 0.6814 12.4726 20 1 1.8729 1.9922 13.7136 21 1 0.2030 3.1028 12.3508 22 6 2.9299 1.3850 -1.2305 23 6 3.9128 0.4373 -1.4464 24 6 4.7049 0.5083 -2.5770 25 6 4.5196 1.5318 -3.4877 26 6 3.5402 2.4824 -3.2691 27 6 2.7454 2.4091 -2.1404 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9354 -0.0004 30 1 1.8500 -0.9352 0.0044 31 1 3.5906 0.5105 1.2951 32 1 3.5540 2.2879 1.2056 33 1 1.0784 2.4150 4.7533 34 1 1.1164 0.6377 4.8430 35 1 0.9267 1.6507 7.3331 36 1 3.3211 0.8746 8.6142 37 1 3.2838 2.6519 8.5242 38 1 3.9019 1.9521 12.0870 39 1 4.0601 -0.3601 -0.7331 40 1 5.4704 -0.2342 -2.7476 41 1 5.1402 1.5887 -4.3696 42 1 3.3956 3.2822 -3.9803 43 1 1.9804 3.1521 -1.9694 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758920285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:40 Heat of formation + Delta-G solvation = -105.827439 kcal Electronic energy + Delta-G solvation = -24701.183130 eV Core-core repulsion = 20903.841294 eV Total energy + Delta-G solvation = -3797.341837 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80311 -40.57616 -40.11955 -37.80479 -36.44148 -36.17615 -34.42011 -32.45058 -31.76369 -31.32329 -30.35486 -28.45241 -25.94067 -24.57026 -23.56525 -22.43543 -21.99290 -21.64081 -20.28894 -19.23677 -18.89099 -17.94050 -17.86015 -17.64064 -17.02367 -16.85801 -16.38581 -16.16909 -15.87677 -15.72695 -15.29546 -14.94783 -14.64671 -14.40140 -14.19708 -14.07969 -14.02930 -13.74325 -13.60633 -13.42294 -12.96079 -12.95930 -12.68507 -12.62554 -12.24468 -12.18966 -11.86416 -11.86227 -11.64936 -11.53493 -11.50522 -10.91449 -10.80982 -10.18770 -9.93603 -9.76710 -9.59019 -8.29757 -6.46607 0.44076 0.55339 1.15652 1.31955 1.44752 1.47726 1.49664 1.55443 1.56274 2.34262 2.58663 2.93057 3.05255 3.59209 3.66147 3.73445 3.91621 4.02991 4.07240 4.10601 4.18277 4.25858 4.32040 4.36532 4.43148 4.64053 4.65925 4.74653 4.93476 5.06381 5.07485 5.14541 5.21254 5.22109 5.33882 5.41558 5.61867 5.62802 5.68430 5.73066 5.76617 5.81600 5.95033 6.16352 6.61469 6.65075 6.79405 7.20082 7.35486 8.82049 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031516 B = 0.001908 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.228669 B =14669.870760 C =15180.961448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.162 4.162 3 C 0.002 3.998 4 H 0.085 0.915 5 C -0.099 4.099 6 C 0.461 3.539 7 O -0.515 6.515 8 O -0.352 6.352 9 C 0.062 3.938 10 C 0.498 3.502 11 O -0.584 6.584 12 N -0.699 5.699 13 C 0.266 3.734 14 C -0.559 4.559 15 H 0.086 0.914 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.986 3.014 19 H -0.262 1.262 20 H -0.286 1.286 21 H -0.262 1.262 22 C -0.081 4.081 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.131 4.131 26 C -0.127 4.127 27 C -0.126 4.126 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.412 0.588 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.269 0.731 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.487 -1.932 -29.954 30.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C -0.017 4.017 4 H 0.104 0.896 5 C -0.137 4.137 6 C 0.305 3.695 7 O -0.404 6.404 8 O -0.268 6.268 9 C -0.015 4.015 10 C 0.284 3.716 11 O -0.465 6.465 12 N -0.351 5.351 13 C 0.144 3.856 14 C -0.597 4.597 15 H 0.104 0.896 16 C -0.196 4.196 17 N -0.568 5.568 18 Si 0.809 3.191 19 H -0.187 1.187 20 H -0.211 1.211 21 H -0.187 1.187 22 C -0.081 4.081 23 C -0.139 4.139 24 C -0.145 4.145 25 C -0.148 4.148 26 C -0.145 4.145 27 C -0.144 4.144 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.134 0.866 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.248 0.752 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.078 0.922 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.863 -1.909 -29.836 30.146 hybrid contribution -0.611 0.034 1.153 1.305 sum -4.473 -1.874 -28.683 29.090 Atomic orbital electron populations 1.23854 0.96054 1.01898 0.98623 1.22806 0.96117 0.97271 1.01806 1.19049 0.95108 0.97621 0.89908 0.89632 1.21556 0.97738 1.07731 0.86637 1.24283 0.88747 0.71795 0.84656 1.90663 1.16694 1.45923 1.87076 1.86574 1.41207 1.83792 1.15263 1.22677 0.90776 1.06851 0.81179 1.20755 0.88260 0.76745 0.85813 1.90683 1.16289 1.51595 1.87935 1.46051 1.11334 1.72347 1.05343 1.18623 0.91586 0.94513 0.80868 1.21586 0.94103 1.53037 0.90927 0.89600 1.26062 0.97032 0.93829 1.02630 1.70131 1.13678 1.49602 1.23367 0.85193 0.77949 0.79467 0.76522 1.18681 1.21139 1.18698 1.19663 0.96656 0.96044 0.95765 1.21229 0.95453 0.98939 0.98291 1.21439 0.99746 0.98974 0.94344 1.21479 0.98447 0.94872 1.00048 1.21411 0.95815 0.99622 0.97639 1.21284 1.00208 0.98189 0.94701 0.88982 0.87921 0.86581 0.85803 0.85973 0.85987 0.86030 0.75150 0.98985 0.98988 0.92193 0.85013 0.84448 0.84403 0.84439 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 13.23 67.78 0.90 -2.09 16 2 C -0.16 -2.75 7.42 25.64 0.19 -2.56 16 3 C 0.00 0.03 1.99 -12.29 -0.02 0.00 16 4 H 0.09 1.48 7.33 -2.38 -0.02 1.46 16 5 C -0.10 -1.70 5.01 29.85 0.15 -1.55 16 6 C 0.46 11.10 7.71 71.24 0.55 11.65 16 7 O -0.52 -13.52 13.92 21.99 0.31 -13.22 16 8 O -0.35 -10.53 9.76 -45.03 -0.44 -10.97 16 9 C 0.06 1.77 5.94 71.23 0.42 2.20 16 10 C 0.50 20.02 7.91 87.66 0.69 20.72 16 11 O -0.58 -29.51 16.50 15.76 0.26 -29.25 16 12 N -0.70 -28.94 5.55 -466.78 -2.59 -31.53 16 13 C 0.27 14.42 5.43 85.63 0.46 14.89 16 14 C -0.56 -29.91 9.28 25.60 0.24 -29.68 16 15 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 16 C 0.00 0.24 5.46 84.65 0.46 0.70 16 17 N -0.93 -55.51 13.29 21.45 0.28 -55.22 16 18 Si 0.99 41.81 29.54 68.60 2.03 43.83 16 19 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 20 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 22 C -0.08 -1.23 4.77 -19.87 -0.09 -1.32 16 23 C -0.12 -1.69 8.87 22.26 0.20 -1.49 16 24 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 25 C -0.13 -1.58 10.05 22.27 0.22 -1.36 16 26 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 27 C -0.13 -1.81 9.67 22.27 0.22 -1.60 16 28 H 0.09 1.72 7.83 -2.91 -0.02 1.70 16 29 H 0.10 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.12 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.12 1.77 7.55 -2.39 -0.02 1.75 16 32 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.12 2.90 8.13 -2.39 -0.02 2.88 16 34 H 0.12 2.90 8.13 -2.39 -0.02 2.88 16 35 H 0.41 13.72 8.32 -92.71 -0.77 12.94 16 36 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 39 H 0.13 1.49 7.62 -2.91 -0.02 1.47 16 40 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 42 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 43 H 0.13 1.56 7.95 -2.91 -0.02 1.54 16 Total: -1.00 -74.22 376.19 5.12 -69.11 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.24 Total: 21.51 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 5.03 Total: 5.74 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -2.30 Total: -86.75 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: 0.13 Total: -53.43 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -74.22 5.12 -69.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758920285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.722 kcal (2) G-P(sol) polarization free energy of solvation -74.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds