Wall clock time and date at job start Tue Mar 31 2020 12:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46670 * 2 1 4 4 C 1.50691 * 109.47553 * 239.99729 * 2 1 3 5 5 H 1.08005 * 120.00480 * 240.00275 * 4 2 1 6 6 C 1.37879 * 119.99969 * 59.99547 * 4 2 1 7 7 N 1.31514 * 120.00149 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47084 * 60.00436 * 8 6 4 10 10 H 1.48505 * 109.47026 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47143 * 300.00244 * 8 6 4 12 12 C 1.53002 * 109.46875 * 119.99428 * 2 1 3 13 13 O 1.45202 * 109.47474 * 300.00364 * 12 2 1 14 14 C 1.34224 * 117.00055 * 180.02562 * 13 12 2 15 15 O 1.20832 * 119.99980 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00227 * 179.97438 * 14 13 12 17 17 N 1.46494 * 109.47138 * 179.97438 * 16 14 13 18 18 C 1.46733 * 125.63110 * 269.99944 * 17 16 14 19 19 C 1.50824 * 106.25492 * 179.83437 * 18 17 16 20 20 C 1.37578 * 133.23760 * 179.58426 * 19 18 17 21 21 C 1.38476 * 119.95420 * 180.30433 * 20 19 18 22 22 C 1.38380 * 120.19100 * 0.28122 * 21 20 19 23 23 C 1.37939 * 120.31999 * 359.97161 * 22 21 20 24 24 C 1.39628 * 119.82739 * 0.02562 * 23 22 21 25 25 C 1.34432 * 125.62096 * 90.03291 * 17 16 14 26 26 O 1.21554 * 124.85490 * 359.97438 * 25 17 16 27 27 H 1.08998 * 109.47220 * 299.99769 * 1 2 3 28 28 H 1.08998 * 109.46998 * 60.00890 * 1 2 3 29 29 H 1.09006 * 109.46689 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46861 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46948 * 299.99784 * 3 2 1 32 32 H 1.08995 * 109.47347 * 59.99693 * 3 2 1 33 33 H 0.97000 * 120.00629 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.46785 * 180.02562 * 12 2 1 35 35 H 1.08997 * 109.47105 * 60.01054 * 12 2 1 36 36 H 1.09004 * 109.46666 * 59.99958 * 16 14 13 37 37 H 1.09001 * 109.47157 * 300.00769 * 16 14 13 38 38 H 1.08996 * 110.09864 * 299.22730 * 18 17 16 39 39 H 1.09000 * 110.09162 * 60.82760 * 18 17 16 40 40 H 1.08002 * 120.02542 * 0.58788 * 20 19 18 41 41 H 1.08001 * 119.89945 * 180.25103 * 21 20 19 42 42 H 1.08002 * 119.84291 * 179.97438 * 22 21 20 43 43 H 1.08004 * 120.08779 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8260 -2.5204 -4.0075 10 1 1.8271 -0.4201 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 6 2.0400 -0.7211 1.2493 13 8 1.5559 -0.0366 2.4349 14 6 1.9169 -0.5463 3.6229 15 8 2.6148 -1.5316 3.6707 16 6 1.4529 0.1109 4.8972 17 7 1.9766 -0.6299 6.0475 18 6 1.3082 -1.7503 6.7189 19 6 2.2274 -2.1838 7.8333 20 6 2.1448 -3.1631 8.7960 21 6 3.1719 -3.3214 9.7113 22 6 4.2795 -2.4932 9.6644 23 6 4.3699 -1.5047 8.7065 24 6 3.3384 -1.3390 7.7802 25 6 3.1488 -0.3948 6.6624 26 8 3.9391 0.4718 6.3433 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 0.7095 1.1616 -3.4844 34 1 3.1300 -0.7207 1.2496 35 1 1.6768 -1.7488 1.2493 36 1 0.3634 0.1102 4.9305 37 1 1.8167 1.1379 4.9297 38 1 0.3499 -1.4260 7.1246 39 1 1.1601 -2.5722 6.0184 40 1 1.2816 -3.8111 8.8351 41 1 3.1080 -4.0931 10.4641 42 1 5.0771 -2.6213 10.3812 43 1 5.2362 -0.8607 8.6731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764824370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:46 Heat of formation + Delta-G solvation = -77.879844 kcal Electronic energy + Delta-G solvation = -25948.073756 eV Core-core repulsion = 22151.943818 eV Total energy + Delta-G solvation = -3796.129938 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.44035 -39.88795 -38.32671 -36.76263 -36.10070 -34.84813 -32.43929 -31.43462 -31.26307 -28.56060 -26.97920 -25.68440 -25.62450 -25.07680 -23.45369 -22.02960 -21.12992 -19.92578 -18.86801 -17.60878 -17.31073 -17.03980 -16.38190 -16.05633 -15.87510 -15.70355 -15.23564 -14.80222 -14.61342 -14.45894 -13.90161 -13.54279 -13.46824 -13.28214 -13.16056 -12.84977 -12.62756 -12.26251 -12.14640 -11.84172 -11.46431 -11.41858 -11.19864 -10.95598 -10.74568 -10.42208 -10.41249 -10.17071 -10.10376 -9.91500 -9.50199 -9.42410 -9.35372 -9.24438 -8.94034 -8.76998 -8.37926 -6.02455 -4.14187 0.47074 0.93393 2.26000 2.51177 2.59764 3.26100 3.29276 3.33631 3.38144 3.56899 3.76529 4.11359 4.37964 4.51564 4.62004 4.84692 4.89522 4.96422 5.06582 5.11743 5.15394 5.21093 5.23833 5.36441 5.57020 5.78112 5.92205 6.02166 6.05750 6.09337 6.21301 6.44685 6.45401 6.69982 6.73140 6.97449 7.03239 7.11950 7.15214 7.39375 7.61580 7.69357 7.89543 8.04615 8.12313 8.20950 8.38470 8.85364 9.51268 10.98715 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029324 B = 0.002463 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.623436 B =11366.569420 C =11489.596246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.070 3.930 3 C -0.130 4.130 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.086 3.914 13 O -0.347 6.347 14 C 0.433 3.567 15 O -0.510 6.510 16 C 0.144 3.856 17 N -0.602 5.602 18 C 0.141 3.859 19 C -0.077 4.077 20 C -0.104 4.104 21 C -0.089 4.089 22 C -0.129 4.129 23 C -0.045 4.045 24 C -0.152 4.152 25 C 0.564 3.436 26 O -0.517 6.517 27 H 0.017 0.983 28 H 0.084 0.916 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.084 0.916 32 H 0.017 0.983 33 H 0.262 0.738 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.641 -5.424 24.644 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 C -0.188 4.188 4 C -0.551 4.551 5 H 0.074 0.926 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.013 3.987 13 O -0.262 6.262 14 C 0.274 3.726 15 O -0.399 6.399 16 C 0.021 3.979 17 N -0.335 5.335 18 C 0.019 3.981 19 C -0.079 4.079 20 C -0.122 4.122 21 C -0.107 4.107 22 C -0.147 4.147 23 C -0.064 4.064 24 C -0.155 4.155 25 C 0.354 3.646 26 O -0.394 6.394 27 H 0.036 0.964 28 H 0.103 0.897 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.103 0.897 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.144 -5.059 24.163 24.713 hybrid contribution 0.480 -0.778 -1.008 1.361 sum -0.664 -5.838 23.155 23.889 Atomic orbital electron populations 1.21772 0.97297 0.98908 1.00713 1.18247 0.93429 0.93114 0.88202 1.21777 0.98174 0.98132 1.00713 1.20894 1.32064 1.12336 0.89830 0.92603 1.24852 0.94780 0.94912 0.98766 1.69814 1.36264 1.22510 1.23434 0.86597 0.79256 0.79726 0.82063 1.20255 1.21175 1.20238 1.23699 0.98282 0.95687 0.81004 1.86506 1.69007 1.55916 1.14754 1.24045 0.78405 0.83182 0.86986 1.90646 1.35199 1.25841 1.88197 1.20755 1.01179 0.96310 0.79614 1.47423 1.21151 1.34749 1.30168 1.20533 0.95126 0.89788 0.92665 1.20454 0.95755 0.95755 0.95890 1.20308 0.99900 0.97578 0.94405 1.21330 0.93099 0.98406 0.97881 1.21138 0.98801 0.95762 0.98996 1.20896 0.96946 0.96594 0.92009 1.20361 0.97298 0.99307 0.98559 1.18269 0.80818 0.83319 0.82234 1.90803 1.45836 1.34412 1.68305 0.96422 0.89701 0.95862 0.95804 0.89694 0.96392 0.92819 0.92555 0.92562 0.85543 0.85374 0.88127 0.88209 0.84987 0.84952 0.84960 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.11 37.16 0.30 -2.77 16 2 C 0.07 1.74 0.58 -155.66 -0.09 1.65 16 3 C -0.13 -3.18 8.11 37.16 0.30 -2.88 16 4 C -0.51 -13.83 8.01 -34.44 -0.28 -14.10 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 6 C 0.07 1.84 5.15 -17.82 -0.09 1.75 16 7 N -0.88 -24.01 9.35 55.43 0.52 -23.49 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.09 1.93 4.26 37.16 0.16 2.09 16 13 O -0.35 -6.85 8.88 -39.24 -0.35 -7.19 16 14 C 0.43 7.62 8.03 36.01 0.29 7.91 16 15 O -0.51 -10.53 16.18 -18.76 -0.30 -10.83 16 16 C 0.14 1.79 6.65 -5.20 -0.03 1.76 16 17 N -0.60 -7.67 2.45 -177.52 -0.44 -8.10 16 18 C 0.14 1.29 7.38 -5.01 -0.04 1.26 16 19 C -0.08 -0.74 6.38 -104.27 -0.66 -1.41 16 20 C -0.10 -0.74 10.03 -39.73 -0.40 -1.14 16 21 C -0.09 -0.57 10.05 -39.44 -0.40 -0.97 16 22 C -0.13 -0.95 10.02 -39.64 -0.40 -1.34 16 23 C -0.05 -0.46 10.10 -39.17 -0.40 -0.85 16 24 C -0.15 -1.85 6.26 -105.05 -0.66 -2.51 16 25 C 0.56 8.56 7.97 -12.62 -0.10 8.46 16 26 O -0.52 -9.71 17.71 5.32 0.09 -9.62 16 27 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 28 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 32 H 0.02 0.39 7.68 -51.93 -0.40 -0.01 16 33 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 35 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 36 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.13 1.52 8.01 -51.93 -0.42 1.11 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 42 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -33.75 363.29 -8.55 -42.30 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.03 Total: -1.38 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -2.49 Total: -3.11 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 0.08 Total: -31.59 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.56 Total: -27.64 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.75 -8.55 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764824370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.579 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds