Wall clock time and date at job start Tue Mar 31 2020 12:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46670 * 2 1 4 4 C 1.50691 * 109.47553 * 239.99729 * 2 1 3 5 5 H 1.08005 * 120.00480 * 240.00275 * 4 2 1 6 6 C 1.37879 * 119.99969 * 59.99547 * 4 2 1 7 7 N 1.31514 * 120.00149 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47084 * 60.00436 * 8 6 4 10 10 H 1.48505 * 109.47026 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47143 * 300.00244 * 8 6 4 12 12 C 1.53002 * 109.46875 * 119.99428 * 2 1 3 13 13 O 1.45202 * 109.47474 * 300.00364 * 12 2 1 14 14 C 1.34224 * 117.00055 * 180.02562 * 13 12 2 15 15 O 1.20832 * 119.99980 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00227 * 179.97438 * 14 13 12 17 17 N 1.46494 * 109.47138 * 179.97438 * 16 14 13 18 18 C 1.46733 * 125.63110 * 269.99944 * 17 16 14 19 19 C 1.50824 * 106.25492 * 179.83437 * 18 17 16 20 20 C 1.37578 * 133.23760 * 179.58426 * 19 18 17 21 21 C 1.38476 * 119.95420 * 180.30433 * 20 19 18 22 22 C 1.38380 * 120.19100 * 0.28122 * 21 20 19 23 23 C 1.37939 * 120.31999 * 359.97161 * 22 21 20 24 24 C 1.39628 * 119.82739 * 0.02562 * 23 22 21 25 25 C 1.34432 * 125.62096 * 90.03291 * 17 16 14 26 26 O 1.21554 * 124.85490 * 359.97438 * 25 17 16 27 27 H 1.08998 * 109.47220 * 299.99769 * 1 2 3 28 28 H 1.08998 * 109.46998 * 60.00890 * 1 2 3 29 29 H 1.09006 * 109.46689 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46861 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46948 * 299.99784 * 3 2 1 32 32 H 1.08995 * 109.47347 * 59.99693 * 3 2 1 33 33 H 0.97000 * 120.00629 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.46785 * 180.02562 * 12 2 1 35 35 H 1.08997 * 109.47105 * 60.01054 * 12 2 1 36 36 H 1.09004 * 109.46666 * 59.99958 * 16 14 13 37 37 H 1.09001 * 109.47157 * 300.00769 * 16 14 13 38 38 H 1.08996 * 110.09864 * 299.22730 * 18 17 16 39 39 H 1.09000 * 110.09162 * 60.82760 * 18 17 16 40 40 H 1.08002 * 120.02542 * 0.58788 * 20 19 18 41 41 H 1.08001 * 119.89945 * 180.25103 * 21 20 19 42 42 H 1.08002 * 119.84291 * 179.97438 * 22 21 20 43 43 H 1.08004 * 120.08779 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8260 -2.5204 -4.0075 10 1 1.8271 -0.4201 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 6 2.0400 -0.7211 1.2493 13 8 1.5559 -0.0366 2.4349 14 6 1.9169 -0.5463 3.6229 15 8 2.6148 -1.5316 3.6707 16 6 1.4529 0.1109 4.8972 17 7 1.9766 -0.6299 6.0475 18 6 1.3082 -1.7503 6.7189 19 6 2.2274 -2.1838 7.8333 20 6 2.1448 -3.1631 8.7960 21 6 3.1719 -3.3214 9.7113 22 6 4.2795 -2.4932 9.6644 23 6 4.3699 -1.5047 8.7065 24 6 3.3384 -1.3390 7.7802 25 6 3.1488 -0.3948 6.6624 26 8 3.9391 0.4718 6.3433 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 0.7095 1.1616 -3.4844 34 1 3.1300 -0.7207 1.2496 35 1 1.6768 -1.7488 1.2493 36 1 0.3634 0.1102 4.9305 37 1 1.8167 1.1379 4.9297 38 1 0.3499 -1.4260 7.1246 39 1 1.1601 -2.5722 6.0184 40 1 1.2816 -3.8111 8.8351 41 1 3.1080 -4.0931 10.4641 42 1 5.0771 -2.6213 10.3812 43 1 5.2362 -0.8607 8.6731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764824370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:45 Heat of formation + Delta-G solvation = -96.719629 kcal Electronic energy + Delta-G solvation = -25948.890711 eV Core-core repulsion = 22151.943818 eV Total energy + Delta-G solvation = -3796.946892 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.36527 -41.32155 -39.21205 -38.38673 -37.22572 -36.61736 -33.46411 -33.10639 -32.08109 -29.56740 -27.77901 -27.58537 -27.48960 -26.97355 -24.36833 -22.71576 -22.33480 -20.96179 -20.75779 -19.01860 -18.19077 -18.13089 -17.77607 -17.50731 -17.28217 -16.85766 -16.71319 -16.14809 -15.60838 -15.22642 -14.99894 -14.96207 -14.68802 -14.55259 -14.46120 -14.07333 -13.67327 -13.51306 -13.34886 -13.17383 -13.12620 -12.82567 -12.78334 -12.67708 -12.34069 -12.15970 -12.05695 -11.86022 -11.76075 -11.31810 -11.29144 -11.14836 -10.76939 -10.41955 -10.33882 -9.96105 -9.72259 -8.06488 -6.24841 -0.26850 0.33047 1.09747 1.21488 1.42664 1.43558 1.50831 1.69854 2.03296 2.43919 2.80148 3.04767 3.16616 3.34632 3.67377 3.89798 3.99073 4.16945 4.19899 4.22336 4.23977 4.32567 4.41841 4.47297 4.50272 4.57435 4.76002 4.82301 4.95129 5.02947 5.04708 5.17627 5.22538 5.33351 5.36235 5.40445 5.46436 5.54343 5.62448 5.63281 5.73183 5.90369 6.06482 6.16191 6.35173 6.65021 6.79601 6.86844 7.42996 8.92896 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029324 B = 0.002463 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.623436 B =11366.569420 C =11489.596246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.061 3.939 3 C -0.121 4.121 4 C -0.537 4.537 5 H 0.046 0.954 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.278 1.278 12 C 0.099 3.901 13 O -0.348 6.348 14 C 0.431 3.569 15 O -0.545 6.545 16 C 0.150 3.850 17 N -0.602 5.602 18 C 0.137 3.863 19 C -0.079 4.079 20 C -0.101 4.101 21 C -0.077 4.077 22 C -0.128 4.128 23 C -0.065 4.065 24 C -0.194 4.194 25 C 0.548 3.452 26 O -0.575 6.575 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.022 0.978 30 H 0.014 0.986 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.038 0.962 35 H 0.052 0.948 36 H 0.180 0.820 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.101 0.899 40 H 0.166 0.834 41 H 0.171 0.829 42 H 0.159 0.841 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.276 -7.123 26.832 27.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.061 3.939 3 C -0.178 4.178 4 C -0.575 4.575 5 H 0.065 0.935 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.778 3.222 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.203 1.203 12 C 0.026 3.974 13 O -0.263 6.263 14 C 0.274 3.726 15 O -0.435 6.435 16 C 0.027 3.973 17 N -0.333 5.333 18 C 0.016 3.984 19 C -0.081 4.081 20 C -0.119 4.119 21 C -0.095 4.095 22 C -0.146 4.146 23 C -0.084 4.084 24 C -0.197 4.197 25 C 0.339 3.661 26 O -0.456 6.456 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.033 0.967 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.197 0.803 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.119 0.881 40 H 0.184 0.816 41 H 0.188 0.812 42 H 0.177 0.823 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.817 -6.779 26.372 27.375 hybrid contribution 1.001 -0.311 -1.563 1.882 sum -1.816 -7.090 24.809 25.866 Atomic orbital electron populations 1.21611 0.96512 0.98817 1.00606 1.18270 0.94060 0.93029 0.88527 1.21648 0.97482 0.98186 1.00526 1.21164 1.32507 1.12543 0.91315 0.93546 1.25497 0.94941 0.95575 1.01100 1.69920 1.36553 1.23119 1.23979 0.85718 0.78528 0.78870 0.79123 1.19832 1.20461 1.20342 1.23234 0.97022 0.95363 0.81799 1.86495 1.69089 1.55783 1.14914 1.25179 0.77308 0.82696 0.87442 1.90632 1.36773 1.27673 1.88461 1.21054 1.03900 0.95641 0.76722 1.47652 1.20749 1.35377 1.29569 1.20858 0.96350 0.88734 0.92449 1.20680 0.94766 0.95975 0.96644 1.20759 1.01140 0.96762 0.93211 1.21852 0.91821 0.98064 0.97743 1.21482 1.00072 0.94667 0.98342 1.21069 0.96584 0.97835 0.92931 1.20361 0.99685 1.00483 0.99200 1.18983 0.80835 0.83138 0.83117 1.90743 1.47719 1.36916 1.70254 0.94338 0.91819 0.95882 0.96705 0.91602 0.94656 0.92730 0.94334 0.92934 0.80314 0.84932 0.83939 0.88094 0.81615 0.81187 0.82338 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.11 71.98 0.58 -4.97 16 2 C 0.06 3.05 0.58 -52.93 -0.03 3.02 16 3 C -0.12 -5.94 8.11 71.98 0.58 -5.36 16 4 C -0.54 -29.35 8.01 25.60 0.21 -29.15 16 5 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 6 C 0.03 1.57 5.15 84.66 0.44 2.01 16 7 N -0.90 -49.09 9.35 21.45 0.20 -48.89 16 8 Si 0.95 43.09 29.54 68.60 2.03 45.11 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.10 4.53 4.26 71.98 0.31 4.83 16 13 O -0.35 -13.57 8.88 -51.36 -0.46 -14.02 16 14 C 0.43 15.01 8.03 71.24 0.57 15.58 16 15 O -0.54 -22.84 16.18 21.94 0.36 -22.49 16 16 C 0.15 3.49 6.65 85.63 0.57 4.05 16 17 N -0.60 -14.86 2.45 -834.01 -2.05 -16.91 16 18 C 0.14 2.18 7.38 85.63 0.63 2.81 16 19 C -0.08 -1.37 6.38 -19.64 -0.13 -1.50 16 20 C -0.10 -1.05 10.03 22.17 0.22 -0.83 16 21 C -0.08 -0.68 10.05 22.36 0.22 -0.45 16 22 C -0.13 -1.59 10.02 22.23 0.22 -1.37 16 23 C -0.07 -1.33 10.10 22.53 0.23 -1.10 16 24 C -0.19 -4.77 6.26 -20.14 -0.13 -4.90 16 25 C 0.55 17.24 7.97 86.75 0.69 17.93 16 26 O -0.58 -23.13 17.71 -3.89 -0.07 -23.20 16 27 H 0.04 1.60 7.68 -2.39 -0.02 1.58 16 28 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 29 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 3.49 6.07 -2.39 -0.01 3.48 16 32 H 0.03 1.56 7.68 -2.39 -0.02 1.54 16 33 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 34 H 0.04 1.86 8.13 -2.38 -0.02 1.84 16 35 H 0.05 2.39 8.13 -2.39 -0.02 2.38 16 36 H 0.18 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.13 3.05 8.01 -2.39 -0.02 3.04 16 38 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.17 0.61 8.06 -2.91 -0.02 0.58 16 41 H 0.17 0.25 8.06 -2.91 -0.02 0.23 16 42 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 43 H 0.12 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -77.21 363.29 6.22 -71.00 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.01 Total: 8.78 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 5.19 Total: 0.62 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: -1.85 Total: -65.80 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -0.17 Total: -59.72 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -77.21 6.22 -71.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764824370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.723 kcal (2) G-P(sol) polarization free energy of solvation -77.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds