Wall clock time and date at job start Tue Mar 31 2020 12:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47263 * 2 1 4 4 O 1.42901 * 109.47270 * 240.00410 * 2 1 3 5 5 C 1.53003 * 109.47784 * 120.00188 * 2 1 3 6 6 C 1.52996 * 109.47591 * 185.00151 * 5 2 1 7 7 O 1.45204 * 109.47011 * 180.02562 * 6 5 2 8 8 C 1.34864 * 116.99920 * 175.29153 * 7 6 5 9 9 O 1.21595 * 119.99732 * 4.18581 * 8 7 6 10 10 C 1.46713 * 120.00254 * 184.18748 * 8 7 6 11 11 C 1.36214 * 125.45075 * 185.27330 * 10 8 7 12 12 C 1.41653 * 107.74293 * 180.02562 * 11 10 8 13 13 C 1.40043 * 133.33771 * 179.97438 * 12 11 10 14 14 C 1.36566 * 119.83110 * 180.02562 * 13 12 11 15 15 C 1.38869 * 120.60445 * 359.97334 * 14 13 12 16 16 C 1.37849 * 120.63372 * 0.29065 * 15 14 13 17 17 C 1.39092 * 119.81487 * 359.47517 * 16 15 14 18 18 N 1.37818 * 133.15089 * 180.18627 * 17 16 15 19 19 C 1.36869 * 125.62303 * 0.28974 * 18 17 16 20 20 H 1.08001 * 119.99868 * 218.36097 * 19 18 17 21 21 C 1.39026 * 120.00098 * 38.34936 * 19 18 17 22 22 N 1.31334 * 119.99941 * 17.69262 * 21 19 18 23 23 Si 1.86796 * 119.99743 * 197.69215 * 21 19 18 24 24 H 1.48496 * 109.47756 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47294 * 120.00334 * 23 21 19 26 26 H 1.48502 * 109.46882 * 239.99955 * 23 21 19 27 27 H 1.09005 * 109.46827 * 299.99482 * 1 2 3 28 28 H 1.08995 * 109.47563 * 59.99911 * 1 2 3 29 29 H 1.09002 * 109.47001 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47583 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47278 * 300.00194 * 3 2 1 32 32 H 1.09002 * 109.47337 * 59.99989 * 3 2 1 33 33 H 0.96702 * 113.99743 * 299.99908 * 4 2 1 34 34 H 1.09000 * 109.46614 * 64.99712 * 5 2 1 35 35 H 1.09005 * 109.46575 * 305.00484 * 5 2 1 36 36 H 1.08995 * 109.47226 * 59.99420 * 6 5 2 37 37 H 1.09002 * 109.46717 * 299.99730 * 6 5 2 38 38 H 1.07994 * 126.12689 * 0.03879 * 11 10 8 39 39 H 1.08001 * 120.08747 * 359.97438 * 13 12 11 40 40 H 1.08004 * 119.70028 * 180.02562 * 14 13 12 41 41 H 1.07993 * 119.68397 * 180.02562 * 15 14 13 42 42 H 1.07990 * 120.09215 * 179.65067 * 16 15 14 43 43 H 0.96997 * 120.00114 * 184.93344 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6133 1.3136 7 8 4.0490 -1.2983 2.4988 8 6 5.3860 -1.3814 2.6548 9 8 6.1258 -0.8292 1.8635 10 6 5.9478 -2.1380 3.7793 11 6 7.2694 -2.2108 4.1008 12 6 7.3905 -3.0371 5.2449 13 6 8.4825 -3.4651 6.0102 14 6 8.2798 -4.2818 7.0859 15 6 6.9987 -4.6928 7.4300 16 6 5.9087 -4.2891 6.6890 17 6 6.0894 -3.4534 5.5920 18 7 5.2203 -2.8913 4.6820 19 6 3.8612 -3.0526 4.6731 20 1 3.3353 -3.1516 3.7349 21 6 3.1576 -3.0892 5.8716 22 7 3.7106 -2.6325 6.9718 23 14 1.4259 -3.7879 5.9169 24 1 1.0354 -4.2323 4.5549 25 1 1.3831 -4.9449 6.8469 26 1 0.4820 -2.7414 6.3852 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.7209 -1.5951 -1.2330 34 1 1.7517 -1.7715 1.2055 35 1 1.6054 -0.2618 2.1369 36 1 3.8532 0.4370 1.3572 37 1 3.9994 -1.0728 0.4258 38 1 8.0797 -1.7252 3.5774 39 1 9.4824 -3.1509 5.7498 40 1 9.1234 -4.6103 7.6748 41 1 6.8555 -5.3383 8.2839 42 1 4.9170 -4.6186 6.9612 43 1 3.2491 -2.7230 7.8202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765465869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:20 Heat of formation + Delta-G solvation = -89.481000 kcal Electronic energy + Delta-G solvation = -26686.339422 eV Core-core repulsion = 22889.706420 eV Total energy + Delta-G solvation = -3796.633002 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.52490 -39.41817 -38.47071 -36.01272 -35.76465 -33.65412 -33.10448 -30.74619 -29.94286 -29.02586 -28.11317 -27.55229 -24.96936 -24.30370 -22.60753 -21.04483 -20.40907 -20.31020 -19.25542 -18.04824 -17.14094 -16.52118 -16.17735 -15.85460 -15.43412 -15.11469 -14.85921 -14.71738 -14.51876 -13.85779 -13.65612 -13.19940 -13.06489 -12.98252 -12.77868 -12.41858 -12.32243 -12.21950 -11.96562 -11.90425 -11.80310 -11.58820 -11.39340 -11.32799 -11.19008 -10.79314 -10.67927 -10.61601 -10.31334 -10.25140 -9.97599 -9.85343 -9.83913 -9.18882 -8.69565 -7.25484 -6.94351 -6.60022 -4.50951 1.65426 2.72168 2.91145 2.95814 2.97872 3.03103 3.23032 3.73831 4.07541 4.09195 4.48868 4.63703 4.67161 4.70419 4.86971 5.04918 5.15721 5.28272 5.45007 5.53284 5.55652 5.65510 5.72804 5.78788 5.84460 5.92509 5.93384 5.97672 6.07315 6.15161 6.19296 6.37678 6.51216 6.62519 6.82909 6.96530 7.01051 7.05811 7.11343 7.45762 7.53239 7.55020 7.62712 7.87500 7.98229 8.32648 8.46199 8.78035 9.23952 10.14434 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.004318 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.688922 B = 6482.366265 C = 8112.735232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.130 3.870 3 C -0.146 4.146 4 O -0.560 6.560 5 C -0.145 4.145 6 C 0.066 3.934 7 O -0.335 6.335 8 C 0.545 3.455 9 O -0.527 6.527 10 C -0.021 4.021 11 C -0.161 4.161 12 C -0.131 4.131 13 C -0.085 4.085 14 C -0.158 4.158 15 C -0.148 4.148 16 C -0.052 4.052 17 C 0.092 3.908 18 N -0.238 5.238 19 C -0.339 4.339 20 H 0.116 0.884 21 C 0.053 3.947 22 N -0.816 5.816 23 Si 0.926 3.074 24 H -0.261 1.261 25 H -0.271 1.271 26 H -0.274 1.274 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.377 0.623 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.134 0.866 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 1.197 -6.323 8.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.090 3.910 3 C -0.203 4.203 4 O -0.367 6.367 5 C -0.183 4.183 6 C -0.008 4.008 7 O -0.251 6.251 8 C 0.393 3.607 9 O -0.418 6.418 10 C -0.134 4.134 11 C -0.189 4.189 12 C -0.136 4.136 13 C -0.104 4.104 14 C -0.177 4.177 15 C -0.168 4.168 16 C -0.071 4.071 17 C -0.024 4.024 18 N 0.100 4.900 19 C -0.467 4.467 20 H 0.134 0.866 21 C -0.160 4.160 22 N -0.445 5.445 23 Si 0.750 3.250 24 H -0.184 1.184 25 H -0.196 1.196 26 H -0.199 1.199 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.224 0.776 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.152 0.848 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.464 2.081 -6.521 8.758 hybrid contribution -1.140 -0.614 0.342 1.340 sum -6.604 1.467 -6.179 9.162 Atomic orbital electron populations 1.22463 0.95304 1.02683 1.02902 1.21146 0.92685 0.93084 0.84121 1.21871 1.02561 0.93418 1.02499 1.86558 1.77327 1.28988 1.43792 1.22255 0.94472 1.02402 0.99162 1.22943 0.93951 0.97161 0.86750 1.86837 1.23944 1.70757 1.43577 1.20051 0.80117 0.77365 0.83153 1.90789 1.60708 1.46053 1.44243 1.19079 0.91670 1.04589 0.98050 1.20305 0.93430 1.05832 0.99304 1.17934 0.93053 1.04095 0.98506 1.20054 0.96374 0.98458 0.95475 1.20285 0.96352 1.02039 0.98998 1.20580 0.92493 1.03389 1.00387 1.20103 0.98131 0.96141 0.92757 1.18133 0.87852 1.00391 0.95983 1.40121 1.05215 1.27155 1.17482 1.19983 0.79420 1.51725 0.95586 0.86627 1.25631 1.00847 0.94490 0.95021 1.70018 1.40304 1.34470 0.99728 0.85881 0.80617 0.78999 0.79509 1.18435 1.19650 1.19945 0.91313 0.91685 0.92125 0.91289 0.91859 0.90877 0.77598 0.90393 0.89651 0.91415 0.91141 0.84848 0.87651 0.87817 0.87596 0.86826 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 8.81 37.15 0.33 -1.23 16 2 C 0.13 1.42 1.09 -90.62 -0.10 1.32 16 3 C -0.15 -1.57 8.35 37.16 0.31 -1.26 16 4 O -0.56 -6.41 12.51 -35.23 -0.44 -6.85 16 5 C -0.15 -1.89 4.86 -26.73 -0.13 -2.02 16 6 C 0.07 1.09 4.91 37.16 0.18 1.27 16 7 O -0.34 -7.04 8.03 -40.94 -0.33 -7.37 16 8 C 0.55 12.63 7.90 34.15 0.27 12.90 16 9 O -0.53 -12.40 16.62 -19.34 -0.32 -12.72 16 10 C -0.02 -0.51 6.76 -82.27 -0.56 -1.07 16 11 C -0.16 -3.78 10.55 -39.01 -0.41 -4.19 16 12 C -0.13 -3.10 6.16 -106.89 -0.66 -3.76 16 13 C -0.08 -1.72 10.06 -39.51 -0.40 -2.12 16 14 C -0.16 -3.01 9.97 -39.95 -0.40 -3.41 16 15 C -0.15 -2.98 10.02 -39.49 -0.40 -3.37 16 16 C -0.05 -1.20 8.55 -39.41 -0.34 -1.54 16 17 C 0.09 2.32 6.08 -83.83 -0.51 1.81 16 18 N -0.24 -6.14 2.83 -56.10 -0.16 -6.30 16 19 C -0.34 -8.51 8.73 -15.01 -0.13 -8.64 16 20 H 0.12 2.81 6.87 -52.49 -0.36 2.45 16 21 C 0.05 1.27 4.43 -17.47 -0.08 1.19 16 22 N -0.82 -20.60 10.89 55.50 0.60 -20.00 16 23 Si 0.93 18.10 29.59 -169.99 -5.03 13.07 16 24 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 25 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 26 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.82 6.35 -51.93 -0.33 0.49 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.38 3.05 9.05 45.56 0.41 3.46 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.09 6.35 -51.93 -0.33 0.76 16 37 H 0.07 1.17 7.77 -51.93 -0.40 0.77 16 38 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 39 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 41 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.11 2.68 6.44 -52.49 -0.34 2.34 16 43 H 0.28 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -29.76 359.40 -8.41 -38.17 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.14 Total: 10.69 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -3.01 Total: -14.10 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.45 Total: -26.30 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -1.09 Total: -26.94 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.76 -8.41 -38.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765465869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.312 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds