Wall clock time and date at job start Tue Mar 31 2020 12:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47263 * 2 1 4 4 O 1.42901 * 109.47270 * 240.00410 * 2 1 3 5 5 C 1.53003 * 109.47784 * 120.00188 * 2 1 3 6 6 C 1.52996 * 109.47591 * 185.00151 * 5 2 1 7 7 O 1.45204 * 109.47011 * 180.02562 * 6 5 2 8 8 C 1.34864 * 116.99920 * 175.29153 * 7 6 5 9 9 O 1.21595 * 119.99732 * 4.18581 * 8 7 6 10 10 C 1.46713 * 120.00254 * 184.18748 * 8 7 6 11 11 C 1.36214 * 125.45075 * 185.27330 * 10 8 7 12 12 C 1.41653 * 107.74293 * 180.02562 * 11 10 8 13 13 C 1.40043 * 133.33771 * 179.97438 * 12 11 10 14 14 C 1.36566 * 119.83110 * 180.02562 * 13 12 11 15 15 C 1.38869 * 120.60445 * 359.97334 * 14 13 12 16 16 C 1.37849 * 120.63372 * 0.29065 * 15 14 13 17 17 C 1.39092 * 119.81487 * 359.47517 * 16 15 14 18 18 N 1.37818 * 133.15089 * 180.18627 * 17 16 15 19 19 C 1.36869 * 125.62303 * 0.28974 * 18 17 16 20 20 H 1.08001 * 119.99868 * 218.36097 * 19 18 17 21 21 C 1.39026 * 120.00098 * 38.34936 * 19 18 17 22 22 N 1.31334 * 119.99941 * 17.69262 * 21 19 18 23 23 Si 1.86796 * 119.99743 * 197.69215 * 21 19 18 24 24 H 1.48496 * 109.47756 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47294 * 120.00334 * 23 21 19 26 26 H 1.48502 * 109.46882 * 239.99955 * 23 21 19 27 27 H 1.09005 * 109.46827 * 299.99482 * 1 2 3 28 28 H 1.08995 * 109.47563 * 59.99911 * 1 2 3 29 29 H 1.09002 * 109.47001 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47583 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47278 * 300.00194 * 3 2 1 32 32 H 1.09002 * 109.47337 * 59.99989 * 3 2 1 33 33 H 0.96702 * 113.99743 * 299.99908 * 4 2 1 34 34 H 1.09000 * 109.46614 * 64.99712 * 5 2 1 35 35 H 1.09005 * 109.46575 * 305.00484 * 5 2 1 36 36 H 1.08995 * 109.47226 * 59.99420 * 6 5 2 37 37 H 1.09002 * 109.46717 * 299.99730 * 6 5 2 38 38 H 1.07994 * 126.12689 * 0.03879 * 11 10 8 39 39 H 1.08001 * 120.08747 * 359.97438 * 13 12 11 40 40 H 1.08004 * 119.70028 * 180.02562 * 14 13 12 41 41 H 1.07993 * 119.68397 * 180.02562 * 15 14 13 42 42 H 1.07990 * 120.09215 * 179.65067 * 16 15 14 43 43 H 0.96997 * 120.00114 * 184.93344 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6133 1.3136 7 8 4.0490 -1.2983 2.4988 8 6 5.3860 -1.3814 2.6548 9 8 6.1258 -0.8292 1.8635 10 6 5.9478 -2.1380 3.7793 11 6 7.2694 -2.2108 4.1008 12 6 7.3905 -3.0371 5.2449 13 6 8.4825 -3.4651 6.0102 14 6 8.2798 -4.2818 7.0859 15 6 6.9987 -4.6928 7.4300 16 6 5.9087 -4.2891 6.6890 17 6 6.0894 -3.4534 5.5920 18 7 5.2203 -2.8913 4.6820 19 6 3.8612 -3.0526 4.6731 20 1 3.3353 -3.1516 3.7349 21 6 3.1576 -3.0892 5.8716 22 7 3.7106 -2.6325 6.9718 23 14 1.4259 -3.7879 5.9169 24 1 1.0354 -4.2323 4.5549 25 1 1.3831 -4.9449 6.8469 26 1 0.4820 -2.7414 6.3852 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.7209 -1.5951 -1.2330 34 1 1.7517 -1.7715 1.2055 35 1 1.6054 -0.2618 2.1369 36 1 3.8532 0.4370 1.3572 37 1 3.9994 -1.0728 0.4258 38 1 8.0797 -1.7252 3.5774 39 1 9.4824 -3.1509 5.7498 40 1 9.1234 -4.6103 7.6748 41 1 6.8555 -5.3383 8.2839 42 1 4.9170 -4.6186 6.9612 43 1 3.2491 -2.7230 7.8202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765465869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:19 Heat of formation + Delta-G solvation = -105.766950 kcal Electronic energy + Delta-G solvation = -26687.045634 eV Core-core repulsion = 22889.706420 eV Total energy + Delta-G solvation = -3797.339214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.27848 -41.03238 -39.51201 -37.66285 -37.44085 -35.44580 -34.08197 -32.51734 -31.18127 -30.64053 -29.76625 -28.35822 -26.78847 -25.80296 -23.99054 -22.77005 -22.07541 -21.30522 -20.96995 -19.78961 -18.82571 -17.77040 -17.64586 -17.32701 -17.10437 -16.47949 -16.36333 -16.15685 -15.61064 -15.38273 -15.05971 -14.75527 -14.67228 -14.62045 -14.23257 -13.67527 -13.59203 -13.48447 -13.26718 -13.16454 -12.99683 -12.88069 -12.79196 -12.67746 -12.50451 -12.36696 -12.15842 -11.99124 -11.81522 -11.66336 -11.50755 -11.42282 -10.96518 -10.95134 -10.45638 -9.01385 -8.72393 -8.35396 -6.38313 -0.09577 1.07400 1.16075 1.36445 1.40046 1.51958 1.67325 2.10550 2.28453 2.75200 2.86895 3.26502 3.33623 3.66876 3.72549 3.82302 4.06820 4.10780 4.19100 4.25198 4.33711 4.42212 4.49230 4.67966 4.70846 4.74264 4.77744 4.82094 4.87938 4.93776 4.96825 5.04200 5.15535 5.18136 5.23834 5.29619 5.31383 5.34698 5.43100 5.72520 5.88501 5.94238 6.14409 6.27947 6.55676 6.69950 6.81298 6.97968 7.42692 8.37613 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.004318 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.688922 B = 6482.366265 C = 8112.735232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.134 3.866 3 C -0.150 4.150 4 O -0.575 6.575 5 C -0.138 4.138 6 C 0.062 3.938 7 O -0.344 6.344 8 C 0.545 3.455 9 O -0.540 6.540 10 C -0.053 4.053 11 C -0.165 4.165 12 C -0.153 4.153 13 C -0.087 4.087 14 C -0.151 4.151 15 C -0.132 4.132 16 C -0.085 4.085 17 C 0.066 3.934 18 N -0.257 5.257 19 C -0.364 4.364 20 H 0.112 0.888 21 C 0.018 3.982 22 N -0.851 5.851 23 Si 0.993 3.007 24 H -0.253 1.253 25 H -0.265 1.265 26 H -0.269 1.269 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.390 0.610 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.150 0.850 41 H 0.139 0.861 42 H 0.100 0.900 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.775 0.455 -5.694 8.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.094 3.906 3 C -0.207 4.207 4 O -0.384 6.384 5 C -0.176 4.176 6 C -0.011 4.011 7 O -0.260 6.260 8 C 0.393 3.607 9 O -0.433 6.433 10 C -0.166 4.166 11 C -0.193 4.193 12 C -0.158 4.158 13 C -0.106 4.106 14 C -0.169 4.169 15 C -0.153 4.153 16 C -0.105 4.105 17 C -0.050 4.050 18 N 0.080 4.920 19 C -0.492 4.492 20 H 0.129 0.871 21 C -0.192 4.192 22 N -0.480 5.480 23 Si 0.813 3.187 24 H -0.176 1.176 25 H -0.189 1.189 26 H -0.194 1.194 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.240 0.760 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.167 0.833 39 H 0.156 0.844 40 H 0.167 0.833 41 H 0.157 0.843 42 H 0.118 0.882 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.813 1.334 -5.905 8.393 hybrid contribution -0.895 -0.398 0.176 0.995 sum -6.708 0.935 -5.729 8.871 Atomic orbital electron populations 1.22407 0.93174 1.03563 1.03630 1.21153 0.94110 0.92601 0.82750 1.21925 1.01431 0.93768 1.03598 1.86533 1.77828 1.30232 1.43801 1.22313 0.91609 1.03143 1.00559 1.23270 0.96235 0.96682 0.84961 1.86820 1.22726 1.71066 1.45415 1.19976 0.80830 0.77077 0.82772 1.90753 1.61141 1.46720 1.44637 1.19531 0.92550 1.05614 0.98902 1.20601 0.93505 1.05681 0.99502 1.18352 0.93719 1.04580 0.99102 1.20493 0.96903 0.98051 0.95155 1.20785 0.97200 1.00482 0.98458 1.21061 0.92145 1.02028 1.00051 1.20200 0.98763 0.97762 0.93745 1.18651 0.88618 1.01111 0.96589 1.40322 1.05593 1.27919 1.18128 1.20196 0.79784 1.53094 0.96084 0.87051 1.26513 1.04451 0.94048 0.94139 1.70095 1.42091 1.35520 1.00343 0.84908 0.75569 0.78372 0.79880 1.17577 1.18923 1.19407 0.90691 0.90826 0.91228 0.93099 0.90812 0.89792 0.76046 0.89999 0.89624 0.91320 0.91571 0.83318 0.84445 0.83282 0.84283 0.88174 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 8.81 71.98 0.63 -2.02 16 2 C 0.13 2.78 1.09 -10.80 -0.01 2.77 16 3 C -0.15 -3.11 8.35 71.98 0.60 -2.51 16 4 O -0.58 -12.65 12.51 -148.98 -1.86 -14.51 16 5 C -0.14 -3.56 4.86 30.59 0.15 -3.41 16 6 C 0.06 2.09 4.91 71.98 0.35 2.45 16 7 O -0.34 -15.05 8.03 -57.77 -0.46 -15.51 16 8 C 0.55 26.33 7.90 70.04 0.55 26.88 16 9 O -0.54 -26.28 16.62 19.52 0.32 -25.95 16 10 C -0.05 -2.75 6.76 39.87 0.27 -2.48 16 11 C -0.17 -7.93 10.55 22.64 0.24 -7.69 16 12 C -0.15 -7.25 6.16 -21.34 -0.13 -7.38 16 13 C -0.09 -3.35 10.06 22.32 0.22 -3.13 16 14 C -0.15 -5.21 9.97 22.03 0.22 -4.99 16 15 C -0.13 -5.03 10.02 22.33 0.22 -4.81 16 16 C -0.08 -3.97 8.55 22.38 0.19 -3.78 16 17 C 0.07 3.39 6.08 39.07 0.24 3.62 16 18 N -0.26 -13.78 2.83 -331.40 -0.94 -14.72 16 19 C -0.36 -18.94 8.73 84.10 0.73 -18.20 16 20 H 0.11 5.65 6.87 -2.91 -0.02 5.63 16 21 C 0.02 0.88 4.43 84.96 0.38 1.26 16 22 N -0.85 -43.93 10.89 21.67 0.24 -43.70 16 23 Si 0.99 37.21 29.59 68.60 2.03 39.24 16 24 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 25 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 26 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 27 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 1.22 6.35 -2.39 -0.02 1.21 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.39 5.91 9.05 -74.06 -0.67 5.24 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.07 2.29 6.35 -2.39 -0.02 2.27 16 37 H 0.07 2.27 7.77 -2.39 -0.02 2.25 16 38 H 0.15 6.41 8.06 -2.91 -0.02 6.38 16 39 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 41 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 42 H 0.10 4.84 6.44 -2.92 -0.02 4.83 16 43 H 0.29 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -66.33 359.40 4.55 -61.78 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: 0.36 Total: 36.78 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 4.86 Total: -23.41 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.70 Total: -58.42 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -2.00 Total: -55.98 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Total: -66.33 4.55 -61.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765465869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.983 kcal (2) G-P(sol) polarization free energy of solvation -66.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds