Wall clock time and date at job start Tue Mar 31 2020 11:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47399 * 2 1 4 4 C 1.30994 * 120.00503 * 126.94946 * 3 2 1 5 5 C 1.50701 * 119.99777 * 7.65639 * 4 3 2 6 6 C 1.53000 * 109.47043 * 126.95652 * 5 4 3 7 7 O 1.45203 * 109.47359 * 180.02562 * 6 5 4 8 8 C 1.34747 * 117.00525 * 179.97438 * 7 6 5 9 9 O 1.21510 * 119.99861 * 0.02562 * 8 7 6 10 10 C 1.47459 * 120.00277 * 179.72244 * 8 7 6 11 11 C 1.39832 * 120.06578 * 0.02562 * 10 8 7 12 12 C 1.37617 * 119.93083 * 179.76152 * 11 10 8 13 13 C 1.39273 * 120.06621 * 0.49116 * 12 11 10 14 14 N 1.39063 * 119.93225 * 179.73907 * 13 12 11 15 15 C 1.34777 * 120.00498 * 217.60195 * 14 13 12 16 16 O 1.21734 * 119.99485 * 4.98534 * 15 14 13 17 17 C 1.46198 * 120.00260 * 184.99107 * 15 14 13 18 18 H 1.07997 * 119.99978 * 359.97438 * 17 15 14 19 19 C 1.40128 * 119.99772 * 179.97438 * 17 15 14 20 20 N 1.30635 * 119.99917 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99700 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46800 * 90.00355 * 21 19 17 23 23 H 1.48501 * 109.47103 * 209.99984 * 21 19 17 24 24 H 1.48493 * 109.47304 * 330.00420 * 21 19 17 25 25 C 1.39272 * 120.13462 * 359.76460 * 13 12 11 26 26 C 1.37614 * 120.06859 * 359.97438 * 25 13 12 27 27 H 1.08994 * 109.47080 * 300.00488 * 1 2 3 28 28 H 1.09000 * 109.46686 * 60.00484 * 1 2 3 29 29 H 1.08995 * 109.46850 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47519 * 239.99205 * 2 1 3 31 31 H 1.09009 * 109.46976 * 119.99549 * 2 1 3 32 32 H 1.08003 * 119.99487 * 306.95476 * 3 2 1 33 33 H 1.08002 * 120.00515 * 187.65138 * 4 3 2 34 34 H 1.08994 * 109.47148 * 6.95621 * 5 4 3 35 35 H 1.09002 * 109.47302 * 246.95260 * 5 4 3 36 36 H 1.09001 * 109.47828 * 59.99989 * 6 5 4 37 37 H 1.09000 * 109.47196 * 299.99657 * 6 5 4 38 38 H 1.07998 * 120.03913 * 359.97438 * 11 10 8 39 39 H 1.07997 * 119.96477 * 180.20799 * 12 11 10 40 40 H 0.97008 * 120.00287 * 37.60469 * 14 13 12 41 41 H 0.97007 * 120.00043 * 180.02562 * 20 19 17 42 42 H 1.08001 * 119.96691 * 179.97438 * 25 13 12 43 43 H 1.07993 * 120.03440 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8937 1.8110 0.9066 5 6 3.5132 0.8035 1.8404 6 6 5.0370 0.9320 1.7911 7 8 5.6341 -0.0392 2.6904 8 6 6.9793 -0.0579 2.7650 9 8 7.6356 0.7166 2.0972 10 6 7.6549 -1.0135 3.6621 11 6 6.9008 -1.9014 4.4356 12 6 7.5343 -2.7955 5.2682 13 6 8.9246 -2.8096 5.3485 14 7 9.5617 -3.7106 6.1948 15 6 10.6661 -3.3356 6.8702 16 8 11.0539 -2.1832 6.8106 17 6 11.3983 -4.3127 7.6742 18 1 11.0541 -5.3349 7.7273 19 6 12.5469 -3.9228 8.3759 20 7 12.9630 -2.6861 8.3120 21 14 13.4821 -5.1711 9.4038 22 1 14.5184 -5.8256 8.5654 23 1 14.1328 -4.4827 10.5474 24 1 12.5387 -6.1973 9.9155 25 6 9.6782 -1.9229 4.5833 26 6 9.0507 -1.0301 3.7449 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.8934 -0.5138 0.8901 32 1 1.6822 2.1173 -0.7475 33 1 3.1599 2.8548 0.9847 34 1 3.2233 -0.2017 1.5346 35 1 3.1658 0.9884 2.8569 36 1 5.3271 1.9372 2.0970 37 1 5.3846 0.7470 0.7747 38 1 5.8225 -1.8879 4.3772 39 1 6.9525 -3.4837 5.8633 40 1 9.2112 -4.6091 6.2991 41 1 13.7583 -2.4163 8.7975 42 1 10.7562 -1.9359 4.6480 43 1 9.6356 -0.3425 3.1521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767424474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:34 Heat of formation + Delta-G solvation = -94.245600 kcal Electronic energy + Delta-G solvation = -24470.788662 eV Core-core repulsion = 20673.949051 eV Total energy + Delta-G solvation = -3796.839611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.36219 -39.14446 -37.48137 -36.89578 -36.08985 -33.65405 -32.63250 -32.54179 -30.60237 -29.83803 -28.94637 -26.54894 -24.36575 -23.57342 -22.93869 -22.30500 -20.89855 -19.89583 -18.73137 -17.84870 -17.40259 -16.98264 -16.67918 -16.25812 -15.76338 -15.58401 -14.71197 -14.58493 -14.41393 -14.22825 -14.06078 -13.72561 -13.42527 -13.17716 -12.76392 -12.71480 -12.51640 -12.43046 -12.14892 -12.04556 -11.94267 -11.79975 -11.36276 -11.35673 -11.15815 -10.86807 -10.80969 -10.69260 -10.48042 -10.41277 -10.30611 -9.45554 -9.34524 -8.99459 -8.64025 -7.90928 -7.34996 -6.44155 -4.92285 1.12588 1.76615 1.84254 2.78831 2.85307 3.02962 3.09715 3.12997 3.91175 4.12653 4.36579 4.41306 4.46600 4.65862 4.69659 4.75275 4.85617 4.96778 5.04092 5.20396 5.22503 5.28775 5.30756 5.33307 5.51802 5.52415 5.62112 5.72046 5.72680 5.76198 5.82412 5.92909 6.05784 6.28135 6.38785 6.42202 6.46759 6.59996 6.82580 6.87879 7.14641 7.20926 7.58707 7.87677 7.96104 8.03070 8.75478 9.05361 10.25899 10.46249 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.037024 B = 0.001889 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.075661 B =14818.124899 C =15362.450127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.151 4.151 4 C -0.159 4.159 5 C -0.100 4.100 6 C 0.074 3.926 7 O -0.357 6.357 8 C 0.518 3.482 9 O -0.520 6.520 10 C -0.185 4.185 11 C -0.037 4.037 12 C -0.192 4.192 13 C 0.236 3.764 14 N -0.697 5.697 15 C 0.539 3.461 16 O -0.556 6.556 17 C -0.536 4.536 18 H 0.074 0.926 19 C 0.086 3.914 20 N -0.756 5.756 21 Si 0.915 3.085 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.263 1.263 25 C -0.143 4.143 26 C -0.030 4.030 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.397 0.603 41 H 0.274 0.726 42 H 0.143 0.857 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.596 2.428 -12.321 23.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.169 4.169 4 C -0.177 4.177 5 C -0.137 4.137 6 C 0.000 4.000 7 O -0.275 6.275 8 C 0.365 3.635 9 O -0.410 6.410 10 C -0.187 4.187 11 C -0.056 4.056 12 C -0.213 4.213 13 C 0.135 3.865 14 N -0.340 5.340 15 C 0.346 3.654 16 O -0.437 6.437 17 C -0.572 4.572 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.384 5.384 21 Si 0.739 3.261 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.187 1.187 25 C -0.164 4.164 26 C -0.049 4.049 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.231 0.769 41 H 0.084 0.916 42 H 0.161 0.839 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.905 3.592 -12.425 22.906 hybrid contribution 0.286 -0.746 0.491 0.938 sum -18.620 2.846 -11.935 22.299 Atomic orbital electron populations 1.21691 0.95010 1.01759 1.01903 1.20875 0.96219 0.94674 1.03072 1.22860 0.98294 0.97664 0.98033 1.22589 0.98815 0.99179 0.97149 1.20780 0.92419 0.99983 1.00528 1.22883 0.92464 0.91600 0.93082 1.86518 1.22520 1.56907 1.61509 1.21246 0.80051 0.82000 0.80233 1.90803 1.66084 1.40329 1.43809 1.18790 0.93522 1.01937 1.04490 1.21039 0.99466 0.92316 0.92770 1.20914 0.92910 1.03435 1.04070 1.18259 0.90902 0.90263 0.87119 1.44296 1.30845 1.14114 1.44734 1.18473 0.78167 0.89180 0.79606 1.90675 1.67041 1.20070 1.65905 1.20867 1.10252 0.96071 1.29987 0.90813 1.25762 0.96732 0.95576 0.95552 1.69977 1.19475 1.16646 1.32300 0.86247 0.79799 0.80686 0.79400 1.19499 1.20231 1.18724 1.21223 1.01591 0.97808 0.95789 1.21040 0.92098 0.96084 0.95658 0.92617 0.92758 0.92470 0.91120 0.90303 0.87059 0.86892 0.89401 0.89937 0.91246 0.91247 0.85165 0.85550 0.76909 0.91554 0.83918 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.90 37.16 0.37 -0.43 16 2 C -0.11 -0.70 6.03 -27.88 -0.17 -0.87 16 3 C -0.15 -1.02 9.51 -36.03 -0.34 -1.36 16 4 C -0.16 -1.17 9.51 -36.02 -0.34 -1.52 16 5 C -0.10 -0.83 5.69 -27.88 -0.16 -0.99 16 6 C 0.07 0.80 5.46 37.16 0.20 1.01 16 7 O -0.36 -4.85 9.46 -40.62 -0.38 -5.23 16 8 C 0.52 8.42 7.89 34.49 0.27 8.70 16 9 O -0.52 -9.56 16.13 -19.27 -0.31 -9.87 16 10 C -0.18 -3.10 5.88 -104.95 -0.62 -3.72 16 11 C -0.04 -0.55 9.60 -39.21 -0.38 -0.93 16 12 C -0.19 -3.09 9.95 -39.42 -0.39 -3.48 16 13 C 0.24 4.64 6.19 -83.81 -0.52 4.13 16 14 N -0.70 -14.69 5.29 -11.19 -0.06 -14.75 16 15 C 0.54 14.30 7.44 -13.06 -0.10 14.20 16 16 O -0.56 -16.79 12.96 5.16 0.07 -16.72 16 17 C -0.54 -14.05 9.54 -35.68 -0.34 -14.40 16 18 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 19 C 0.09 2.23 5.50 -17.35 -0.10 2.14 16 20 N -0.76 -21.39 11.82 55.55 0.66 -20.73 16 21 Si 0.91 18.90 29.56 -169.99 -5.02 13.87 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 25 C -0.14 -2.93 8.61 -39.42 -0.34 -3.27 16 26 C -0.03 -0.54 9.58 -39.21 -0.38 -0.92 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.51 5.29 -51.92 -0.27 0.24 16 32 H 0.11 0.64 8.06 -52.48 -0.42 0.22 16 33 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.09 0.69 5.29 -51.93 -0.27 0.42 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.13 1.60 7.60 -52.49 -0.40 1.20 16 39 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.40 6.98 8.80 -40.82 -0.36 6.62 16 41 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 42 H 0.14 3.28 6.70 -52.49 -0.35 2.93 16 43 H 0.13 2.28 7.64 -52.49 -0.40 1.88 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -32.47 371.44 -8.61 -41.08 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.83 Total: 8.48 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -3.32 Total: -1.72 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.60 Total: -35.48 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.63 Total: -31.83 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.47 -8.61 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767424474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.166 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds