Wall clock time and date at job start Tue Mar 31 2020 11:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47399 * 2 1 4 4 C 1.30994 * 120.00503 * 126.94946 * 3 2 1 5 5 C 1.50701 * 119.99777 * 7.65639 * 4 3 2 6 6 C 1.53000 * 109.47043 * 126.95652 * 5 4 3 7 7 O 1.45203 * 109.47359 * 180.02562 * 6 5 4 8 8 C 1.34747 * 117.00525 * 179.97438 * 7 6 5 9 9 O 1.21510 * 119.99861 * 0.02562 * 8 7 6 10 10 C 1.47459 * 120.00277 * 179.72244 * 8 7 6 11 11 C 1.39832 * 120.06578 * 0.02562 * 10 8 7 12 12 C 1.37617 * 119.93083 * 179.76152 * 11 10 8 13 13 C 1.39273 * 120.06621 * 0.49116 * 12 11 10 14 14 N 1.39063 * 119.93225 * 179.73907 * 13 12 11 15 15 C 1.34777 * 120.00498 * 217.60195 * 14 13 12 16 16 O 1.21734 * 119.99485 * 4.98534 * 15 14 13 17 17 C 1.46198 * 120.00260 * 184.99107 * 15 14 13 18 18 H 1.07997 * 119.99978 * 359.97438 * 17 15 14 19 19 C 1.40128 * 119.99772 * 179.97438 * 17 15 14 20 20 N 1.30635 * 119.99917 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99700 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46800 * 90.00355 * 21 19 17 23 23 H 1.48501 * 109.47103 * 209.99984 * 21 19 17 24 24 H 1.48493 * 109.47304 * 330.00420 * 21 19 17 25 25 C 1.39272 * 120.13462 * 359.76460 * 13 12 11 26 26 C 1.37614 * 120.06859 * 359.97438 * 25 13 12 27 27 H 1.08994 * 109.47080 * 300.00488 * 1 2 3 28 28 H 1.09000 * 109.46686 * 60.00484 * 1 2 3 29 29 H 1.08995 * 109.46850 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47519 * 239.99205 * 2 1 3 31 31 H 1.09009 * 109.46976 * 119.99549 * 2 1 3 32 32 H 1.08003 * 119.99487 * 306.95476 * 3 2 1 33 33 H 1.08002 * 120.00515 * 187.65138 * 4 3 2 34 34 H 1.08994 * 109.47148 * 6.95621 * 5 4 3 35 35 H 1.09002 * 109.47302 * 246.95260 * 5 4 3 36 36 H 1.09001 * 109.47828 * 59.99989 * 6 5 4 37 37 H 1.09000 * 109.47196 * 299.99657 * 6 5 4 38 38 H 1.07998 * 120.03913 * 359.97438 * 11 10 8 39 39 H 1.07997 * 119.96477 * 180.20799 * 12 11 10 40 40 H 0.97008 * 120.00287 * 37.60469 * 14 13 12 41 41 H 0.97007 * 120.00043 * 180.02562 * 20 19 17 42 42 H 1.08001 * 119.96691 * 179.97438 * 25 13 12 43 43 H 1.07993 * 120.03440 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8937 1.8110 0.9066 5 6 3.5132 0.8035 1.8404 6 6 5.0370 0.9320 1.7911 7 8 5.6341 -0.0392 2.6904 8 6 6.9793 -0.0579 2.7650 9 8 7.6356 0.7166 2.0972 10 6 7.6549 -1.0135 3.6621 11 6 6.9008 -1.9014 4.4356 12 6 7.5343 -2.7955 5.2682 13 6 8.9246 -2.8096 5.3485 14 7 9.5617 -3.7106 6.1948 15 6 10.6661 -3.3356 6.8702 16 8 11.0539 -2.1832 6.8106 17 6 11.3983 -4.3127 7.6742 18 1 11.0541 -5.3349 7.7273 19 6 12.5469 -3.9228 8.3759 20 7 12.9630 -2.6861 8.3120 21 14 13.4821 -5.1711 9.4038 22 1 14.5184 -5.8256 8.5654 23 1 14.1328 -4.4827 10.5474 24 1 12.5387 -6.1973 9.9155 25 6 9.6782 -1.9229 4.5833 26 6 9.0507 -1.0301 3.7449 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.8934 -0.5138 0.8901 32 1 1.6822 2.1173 -0.7475 33 1 3.1599 2.8548 0.9847 34 1 3.2233 -0.2017 1.5346 35 1 3.1658 0.9884 2.8569 36 1 5.3271 1.9372 2.0970 37 1 5.3846 0.7470 0.7747 38 1 5.8225 -1.8879 4.3772 39 1 6.9525 -3.4837 5.8633 40 1 9.2112 -4.6091 6.2991 41 1 13.7583 -2.4163 8.7975 42 1 10.7562 -1.9359 4.6480 43 1 9.6356 -0.3425 3.1521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767424474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:34 Heat of formation + Delta-G solvation = -112.473110 kcal Electronic energy + Delta-G solvation = -24471.579066 eV Core-core repulsion = 20673.949051 eV Total energy + Delta-G solvation = -3797.630015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.65405 -40.70095 -38.79699 -38.06588 -37.13961 -35.41832 -34.56755 -33.25602 -32.00472 -31.22015 -29.80454 -28.42656 -25.50781 -24.35150 -23.98682 -23.57216 -22.36940 -21.51639 -19.61890 -19.40703 -18.68073 -18.23724 -17.78083 -17.65795 -17.53987 -16.55402 -16.14140 -15.75697 -15.62655 -15.28872 -15.08853 -14.82792 -14.68048 -14.52944 -14.35984 -14.23467 -13.61729 -13.52226 -13.16239 -13.08272 -12.92615 -12.84585 -12.79880 -12.73143 -12.68208 -12.18358 -12.03901 -11.83800 -11.72170 -11.58199 -11.19950 -11.13016 -10.89589 -10.13262 -9.89296 -9.86901 -8.98697 -8.39273 -6.97309 -0.29079 0.44148 1.15939 1.38494 1.41224 1.50473 1.57816 1.70288 2.20132 2.35738 2.77581 2.89130 3.53345 3.64736 3.83771 3.90845 3.96398 4.00868 4.07636 4.20228 4.33656 4.36059 4.39645 4.49474 4.52827 4.64482 4.66367 4.79472 4.89423 5.00456 5.03063 5.14668 5.18742 5.24509 5.25305 5.32618 5.38598 5.38952 5.40761 5.67462 5.76569 5.77268 5.92163 6.12785 6.25068 6.69382 6.76073 7.26662 8.30325 8.54141 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.037024 B = 0.001889 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.075661 B =14818.124899 C =15362.450127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.146 4.146 4 C -0.172 4.172 5 C -0.092 4.092 6 C 0.069 3.931 7 O -0.348 6.348 8 C 0.523 3.477 9 O -0.545 6.545 10 C -0.183 4.183 11 C -0.020 4.020 12 C -0.172 4.172 13 C 0.208 3.792 14 N -0.689 5.689 15 C 0.527 3.473 16 O -0.605 6.605 17 C -0.562 4.562 18 H 0.097 0.903 19 C 0.029 3.971 20 N -0.812 5.812 21 Si 1.001 2.999 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.245 1.245 25 C -0.165 4.165 26 C -0.036 4.036 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.172 0.828 39 H 0.163 0.837 40 H 0.414 0.586 41 H 0.278 0.722 42 H 0.103 0.897 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.386 0.871 -12.251 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.164 4.164 4 C -0.190 4.190 5 C -0.128 4.128 6 C -0.005 4.005 7 O -0.264 6.264 8 C 0.371 3.629 9 O -0.438 6.438 10 C -0.185 4.185 11 C -0.038 4.038 12 C -0.193 4.193 13 C 0.108 3.892 14 N -0.333 5.333 15 C 0.334 3.666 16 O -0.491 6.491 17 C -0.597 4.597 18 H 0.115 0.885 19 C -0.187 4.187 20 N -0.441 5.441 21 Si 0.820 3.180 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.168 1.168 25 C -0.186 4.186 26 C -0.055 4.055 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.189 0.811 39 H 0.181 0.819 40 H 0.251 0.749 41 H 0.088 0.912 42 H 0.121 0.879 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.771 2.007 -12.391 25.131 hybrid contribution 0.973 -0.172 0.302 1.033 sum -20.798 1.835 -12.090 24.126 Atomic orbital electron populations 1.21685 0.94387 1.02167 1.02031 1.20924 0.96788 0.94368 1.03123 1.23049 0.97618 0.98112 0.97608 1.22600 0.99558 0.99308 0.97539 1.20739 0.90169 1.00729 1.01184 1.23166 0.94039 0.90874 0.92391 1.86495 1.20661 1.57439 1.61843 1.21095 0.80928 0.81321 0.79585 1.90799 1.66917 1.41279 1.44774 1.18952 0.92878 1.02199 1.04515 1.21444 1.01220 0.90412 0.90765 1.21225 0.91075 1.03471 1.03553 1.18500 0.92528 0.90569 0.87598 1.43760 1.29807 1.15225 1.44510 1.18801 0.79228 0.88688 0.79886 1.90635 1.68820 1.21975 1.67630 1.21436 1.10886 0.97141 1.30234 0.88451 1.27021 0.97536 0.97690 0.96495 1.70146 1.20489 1.19545 1.33929 0.84952 0.78216 0.77640 0.77160 1.18684 1.19943 1.16822 1.20980 0.99997 0.99791 0.97871 1.20984 0.93298 0.95748 0.95434 0.92814 0.92324 0.91966 0.90865 0.90434 0.86069 0.86418 0.88743 0.89461 0.91407 0.91401 0.81100 0.81939 0.74941 0.91199 0.87861 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.90 71.98 0.71 -0.58 16 2 C -0.12 -1.20 6.03 29.85 0.18 -1.02 16 3 C -0.15 -1.67 9.51 25.65 0.24 -1.43 16 4 C -0.17 -2.20 9.51 25.65 0.24 -1.95 16 5 C -0.09 -1.30 5.69 29.85 0.17 -1.14 16 6 C 0.07 1.38 5.46 71.98 0.39 1.77 16 7 O -0.35 -8.59 9.46 -56.58 -0.54 -9.13 16 8 C 0.52 16.31 7.89 70.25 0.55 16.86 16 9 O -0.55 -19.88 16.13 19.80 0.32 -19.56 16 10 C -0.18 -5.92 5.88 -20.08 -0.12 -6.04 16 11 C -0.02 -0.53 9.60 22.51 0.22 -0.32 16 12 C -0.17 -5.09 9.95 22.37 0.22 -4.86 16 13 C 0.21 8.21 6.19 38.49 0.24 8.45 16 14 N -0.69 -29.33 5.29 -307.50 -1.63 -30.95 16 15 C 0.53 28.95 7.44 86.31 0.64 29.60 16 16 O -0.61 -38.71 12.96 -4.46 -0.06 -38.76 16 17 C -0.56 -29.81 9.54 24.80 0.24 -29.58 16 18 H 0.10 4.51 7.85 -2.91 -0.02 4.49 16 19 C 0.03 1.54 5.50 85.33 0.47 2.01 16 20 N -0.81 -47.74 11.82 21.85 0.26 -47.48 16 21 Si 1.00 38.65 29.56 68.60 2.03 40.68 16 22 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 23 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 24 H -0.25 -8.66 7.11 99.48 0.71 -7.96 16 25 C -0.17 -7.15 8.61 22.37 0.19 -6.95 16 26 C -0.04 -1.34 9.58 22.51 0.22 -1.13 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.82 5.29 -2.38 -0.01 0.81 16 32 H 0.12 1.14 8.06 -2.91 -0.02 1.12 16 33 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.09 1.23 5.29 -2.39 -0.01 1.22 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.17 3.28 7.60 -2.91 -0.02 3.26 16 39 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 40 H 0.41 14.23 8.80 -92.70 -0.82 13.41 16 41 H 0.28 14.81 8.29 -92.70 -0.77 14.04 16 42 H 0.10 5.24 6.70 -2.91 -0.02 5.22 16 43 H 0.13 4.76 7.64 -2.91 -0.02 4.74 16 Total: -1.00 -74.25 371.44 5.42 -68.83 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.22 Total: 32.69 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 4.81 Total: 3.69 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -1.37 Total: -78.43 kcal Atomic # 8 Polarization: -67.18 SS G_CDS: -0.27 Total: -67.45 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -74.25 5.42 -68.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767424474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.644 kcal (2) G-P(sol) polarization free energy of solvation -74.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds