Wall clock time and date at job start Tue Mar 31 2020 11:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47296 * 2 1 4 4 C 1.31000 * 120.00041 * 124.99735 * 3 2 1 5 5 C 1.50699 * 120.00041 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46580 * 125.00827 * 5 4 3 7 7 O 1.45199 * 109.47113 * 180.02562 * 6 5 4 8 8 C 1.34758 * 117.00270 * 179.97438 * 7 6 5 9 9 O 1.21504 * 119.99638 * 359.97438 * 8 7 6 10 10 C 1.47464 * 119.99762 * 180.02562 * 8 7 6 11 11 C 1.39835 * 120.07154 * 359.72128 * 10 8 7 12 12 C 1.37606 * 119.93239 * 179.81017 * 11 10 8 13 13 C 1.39271 * 120.06379 * 0.44650 * 12 11 10 14 14 N 1.39077 * 119.93066 * 179.76608 * 13 12 11 15 15 C 1.34775 * 120.00020 * 213.43086 * 14 13 12 16 16 O 1.21717 * 119.99969 * 5.11886 * 15 14 13 17 17 C 1.46202 * 119.99951 * 185.12539 * 15 14 13 18 18 H 1.07997 * 119.99978 * 6.08208 * 17 15 14 19 19 C 1.40118 * 119.99805 * 186.08147 * 17 15 14 20 20 N 1.30640 * 120.00249 * 353.81579 * 19 17 15 21 21 Si 1.86807 * 120.00000 * 173.81574 * 19 17 15 22 22 H 1.48490 * 109.47100 * 94.98174 * 21 19 17 23 23 H 1.48498 * 109.47169 * 214.98371 * 21 19 17 24 24 H 1.48507 * 109.47023 * 334.98350 * 21 19 17 25 25 C 1.39270 * 120.14034 * 359.78307 * 13 12 11 26 26 C 1.37606 * 120.06490 * 0.02562 * 25 13 12 27 27 H 1.08997 * 109.47663 * 59.99368 * 1 2 3 28 28 H 1.09004 * 109.46825 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46857 * 299.99293 * 1 2 3 30 30 H 1.08998 * 109.46857 * 240.00707 * 2 1 3 31 31 H 1.08997 * 109.47663 * 120.00632 * 2 1 3 32 32 H 1.08000 * 120.00001 * 305.01026 * 3 2 1 33 33 H 1.08000 * 119.99958 * 0.02562 * 4 3 2 34 34 H 1.09002 * 109.47274 * 5.01380 * 5 4 3 35 35 H 1.09000 * 109.47643 * 245.00302 * 5 4 3 36 36 H 1.08994 * 109.47658 * 60.00101 * 6 5 4 37 37 H 1.08999 * 109.47170 * 299.99796 * 6 5 4 38 38 H 1.08004 * 120.03293 * 0.03296 * 11 10 8 39 39 H 1.07996 * 119.96352 * 180.21504 * 12 11 10 40 40 H 0.97001 * 120.00120 * 33.42224 * 14 13 12 41 41 H 0.97002 * 119.99644 * 179.97438 * 20 19 17 42 42 H 1.07997 * 119.96823 * 179.97438 * 25 13 12 43 43 H 1.07996 * 120.03521 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8642 1.8214 0.9293 5 6 3.3661 3.2424 0.9297 6 6 3.0710 3.8870 2.2855 7 8 3.5540 5.2563 2.2858 8 6 3.3703 5.9697 3.4141 9 8 2.8210 5.4616 4.3714 10 6 3.8348 7.3674 3.4866 11 6 4.4713 7.9521 2.3874 12 6 4.9002 9.2578 2.4567 13 6 4.7090 9.9939 3.6235 14 7 5.1479 11.3118 3.6922 15 6 5.5990 11.8118 4.8597 16 8 5.7102 11.0858 5.8302 17 6 5.9547 13.2264 4.9603 18 1 5.7642 13.8914 4.1309 19 6 6.5426 13.7192 6.1328 20 7 6.6627 12.9454 7.1785 21 14 7.1547 15.4828 6.2008 22 1 6.1012 16.3502 6.7860 23 1 8.3761 15.5507 7.0427 24 1 7.4736 15.9494 4.8274 25 6 4.0797 9.4129 4.7216 26 6 3.6452 8.1089 4.6570 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.7065 2.1088 -0.7661 33 1 3.1902 1.1334 1.6953 34 1 2.8640 3.8053 0.1428 35 1 4.4414 3.2480 0.7511 36 1 3.5730 3.3242 3.0725 37 1 1.9958 3.8814 2.4642 38 1 4.6230 7.3806 1.4836 39 1 5.3887 9.7110 1.6069 40 1 5.1295 11.8711 2.8999 41 1 7.0700 13.2865 7.9900 42 1 3.9333 9.9861 5.6251 43 1 3.1576 7.6587 5.5090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767424577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:38 Heat of formation + Delta-G solvation = -102.121335 kcal Electronic energy + Delta-G solvation = -24265.840758 eV Core-core repulsion = 20468.659630 eV Total energy + Delta-G solvation = -3797.181128 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.34574 -39.15603 -37.26665 -36.77893 -36.05781 -33.67482 -33.14429 -32.59086 -30.58206 -29.81126 -28.84135 -26.56093 -24.64064 -23.30392 -22.43443 -21.85498 -20.91818 -20.06091 -19.79873 -17.91272 -17.45709 -16.86094 -16.52645 -16.23538 -15.60309 -15.19556 -15.04240 -14.53954 -14.37930 -14.07970 -13.89341 -13.77835 -13.43150 -13.19613 -12.79649 -12.77119 -12.63743 -12.46760 -12.12742 -12.03846 -11.82587 -11.64295 -11.42138 -11.38037 -11.24837 -11.15953 -10.82319 -10.68390 -10.56115 -10.41913 -10.29508 -9.51374 -9.38756 -9.00053 -8.63038 -7.90291 -7.31688 -6.46272 -4.93082 1.14619 1.78592 1.85865 2.79164 2.86389 3.02130 3.09268 3.12934 3.90399 4.12214 4.35268 4.43375 4.44001 4.58774 4.72849 4.79739 4.93313 4.93790 4.98414 5.09353 5.21882 5.31712 5.34720 5.36639 5.49855 5.50938 5.57766 5.64809 5.69385 5.76968 5.80527 5.94238 6.07360 6.29910 6.38865 6.42771 6.46278 6.61330 6.84635 6.89338 7.15757 7.20934 7.57746 7.86466 7.97453 8.02065 8.74225 9.03397 10.23545 10.44284 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.050217 B = 0.001759 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.450912 B =15914.555174 C =16204.815925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.151 4.151 4 C -0.158 4.158 5 C -0.090 4.090 6 C 0.072 3.928 7 O -0.358 6.358 8 C 0.518 3.482 9 O -0.521 6.521 10 C -0.188 4.188 11 C -0.035 4.035 12 C -0.196 4.196 13 C 0.236 3.764 14 N -0.694 5.694 15 C 0.538 3.462 16 O -0.555 6.555 17 C -0.537 4.537 18 H 0.074 0.926 19 C 0.086 3.914 20 N -0.755 5.755 21 Si 0.914 3.086 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.262 1.262 25 C -0.147 4.147 26 C -0.029 4.029 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.397 0.603 41 H 0.274 0.726 42 H 0.148 0.852 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 -17.029 -14.525 23.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.135 4.135 3 C -0.169 4.169 4 C -0.176 4.176 5 C -0.127 4.127 6 C -0.002 4.002 7 O -0.275 6.275 8 C 0.365 3.635 9 O -0.411 6.411 10 C -0.191 4.191 11 C -0.054 4.054 12 C -0.218 4.218 13 C 0.134 3.866 14 N -0.335 5.335 15 C 0.345 3.655 16 O -0.436 6.436 17 C -0.572 4.572 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.383 5.383 21 Si 0.738 3.262 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.168 4.168 26 C -0.048 4.048 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.231 0.769 41 H 0.085 0.915 42 H 0.166 0.834 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.279 -17.619 -13.293 23.241 hybrid contribution 0.346 0.997 -0.283 1.092 sum -6.933 -16.623 -13.576 22.554 Atomic orbital electron populations 1.21720 0.95039 1.01710 1.02184 1.20655 0.96264 0.94176 1.02362 1.22937 0.97555 0.97454 0.98999 1.22657 0.99077 0.96215 0.99673 1.20619 1.02758 0.92922 0.96387 1.22915 0.99774 0.79221 0.98276 1.86525 1.75209 1.26292 1.39472 1.21256 0.75590 0.86849 0.79827 1.90799 1.41196 1.71739 1.37344 1.18787 1.11848 0.90803 0.97628 1.21022 0.93473 0.94050 0.96887 1.20856 1.07182 0.94597 0.99134 1.18304 0.88442 0.86297 0.93542 1.44315 1.64813 1.09198 1.15163 1.18475 0.77531 0.89372 0.80113 1.90656 1.56556 1.60545 1.35855 1.20867 1.42818 0.91903 1.01620 0.90756 1.25757 0.93918 0.99315 0.94588 1.69980 1.30633 1.36028 1.01641 0.86246 0.78793 0.81964 0.79224 1.19572 1.20157 1.18642 1.21304 0.99624 0.95506 1.00402 1.21053 0.95051 0.93083 0.95608 0.92563 0.92557 0.92504 0.91093 0.91551 0.87152 0.87006 0.90373 0.89772 0.91220 0.91260 0.85199 0.85589 0.76885 0.91535 0.83444 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.89 37.16 0.37 -0.45 16 2 C -0.10 -0.56 6.38 -27.88 -0.18 -0.74 16 3 C -0.15 -1.03 9.12 -36.03 -0.33 -1.36 16 4 C -0.16 -1.17 9.12 -36.03 -0.33 -1.50 16 5 C -0.09 -0.74 6.04 -27.88 -0.17 -0.91 16 6 C 0.07 0.79 5.46 37.16 0.20 0.99 16 7 O -0.36 -4.90 9.46 -40.65 -0.38 -5.28 16 8 C 0.52 8.49 7.89 34.49 0.27 8.76 16 9 O -0.52 -9.63 16.13 -19.27 -0.31 -9.94 16 10 C -0.19 -3.18 5.88 -104.94 -0.62 -3.80 16 11 C -0.04 -0.53 9.60 -39.22 -0.38 -0.91 16 12 C -0.20 -3.16 9.94 -39.43 -0.39 -3.55 16 13 C 0.24 4.66 6.27 -83.81 -0.53 4.13 16 14 N -0.69 -14.59 5.30 -11.19 -0.06 -14.65 16 15 C 0.54 14.23 7.46 -13.06 -0.10 14.13 16 16 O -0.55 -16.65 12.69 5.17 0.07 -16.58 16 17 C -0.54 -14.02 9.53 -35.68 -0.34 -14.36 16 18 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 19 C 0.09 2.24 5.50 -17.35 -0.10 2.15 16 20 N -0.76 -21.27 11.85 55.55 0.66 -20.62 16 21 Si 0.91 18.83 29.56 -169.99 -5.03 13.80 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 25 C -0.15 -3.04 8.62 -39.43 -0.34 -3.38 16 26 C -0.03 -0.53 9.58 -39.21 -0.38 -0.91 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.37 7.79 -51.93 -0.40 -0.03 16 32 H 0.11 0.70 7.84 -52.49 -0.41 0.29 16 33 H 0.11 0.76 7.84 -52.49 -0.41 0.35 16 34 H 0.08 0.61 7.79 -51.93 -0.40 0.21 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.13 1.61 7.60 -52.48 -0.40 1.21 16 39 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.40 6.97 8.79 -40.82 -0.36 6.61 16 41 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 42 H 0.15 3.45 6.39 -52.49 -0.34 3.11 16 43 H 0.13 2.30 7.64 -52.49 -0.40 1.90 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -32.24 375.49 -8.77 -41.01 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.05 Total: 8.30 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -3.32 Total: -1.70 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.60 Total: -35.27 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.63 Total: -31.81 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.24 -8.77 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767424577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.106 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds