Wall clock time and date at job start Tue Mar 31 2020 11:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47296 * 2 1 4 4 C 1.31000 * 120.00041 * 124.99735 * 3 2 1 5 5 C 1.50699 * 120.00041 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46580 * 125.00827 * 5 4 3 7 7 O 1.45199 * 109.47113 * 180.02562 * 6 5 4 8 8 C 1.34758 * 117.00270 * 179.97438 * 7 6 5 9 9 O 1.21504 * 119.99638 * 359.97438 * 8 7 6 10 10 C 1.47464 * 119.99762 * 180.02562 * 8 7 6 11 11 C 1.39835 * 120.07154 * 359.72128 * 10 8 7 12 12 C 1.37606 * 119.93239 * 179.81017 * 11 10 8 13 13 C 1.39271 * 120.06379 * 0.44650 * 12 11 10 14 14 N 1.39077 * 119.93066 * 179.76608 * 13 12 11 15 15 C 1.34775 * 120.00020 * 213.43086 * 14 13 12 16 16 O 1.21717 * 119.99969 * 5.11886 * 15 14 13 17 17 C 1.46202 * 119.99951 * 185.12539 * 15 14 13 18 18 H 1.07997 * 119.99978 * 6.08208 * 17 15 14 19 19 C 1.40118 * 119.99805 * 186.08147 * 17 15 14 20 20 N 1.30640 * 120.00249 * 353.81579 * 19 17 15 21 21 Si 1.86807 * 120.00000 * 173.81574 * 19 17 15 22 22 H 1.48490 * 109.47100 * 94.98174 * 21 19 17 23 23 H 1.48498 * 109.47169 * 214.98371 * 21 19 17 24 24 H 1.48507 * 109.47023 * 334.98350 * 21 19 17 25 25 C 1.39270 * 120.14034 * 359.78307 * 13 12 11 26 26 C 1.37606 * 120.06490 * 0.02562 * 25 13 12 27 27 H 1.08997 * 109.47663 * 59.99368 * 1 2 3 28 28 H 1.09004 * 109.46825 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46857 * 299.99293 * 1 2 3 30 30 H 1.08998 * 109.46857 * 240.00707 * 2 1 3 31 31 H 1.08997 * 109.47663 * 120.00632 * 2 1 3 32 32 H 1.08000 * 120.00001 * 305.01026 * 3 2 1 33 33 H 1.08000 * 119.99958 * 0.02562 * 4 3 2 34 34 H 1.09002 * 109.47274 * 5.01380 * 5 4 3 35 35 H 1.09000 * 109.47643 * 245.00302 * 5 4 3 36 36 H 1.08994 * 109.47658 * 60.00101 * 6 5 4 37 37 H 1.08999 * 109.47170 * 299.99796 * 6 5 4 38 38 H 1.08004 * 120.03293 * 0.03296 * 11 10 8 39 39 H 1.07996 * 119.96352 * 180.21504 * 12 11 10 40 40 H 0.97001 * 120.00120 * 33.42224 * 14 13 12 41 41 H 0.97002 * 119.99644 * 179.97438 * 20 19 17 42 42 H 1.07997 * 119.96823 * 179.97438 * 25 13 12 43 43 H 1.07996 * 120.03521 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8642 1.8214 0.9293 5 6 3.3661 3.2424 0.9297 6 6 3.0710 3.8870 2.2855 7 8 3.5540 5.2563 2.2858 8 6 3.3703 5.9697 3.4141 9 8 2.8210 5.4616 4.3714 10 6 3.8348 7.3674 3.4866 11 6 4.4713 7.9521 2.3874 12 6 4.9002 9.2578 2.4567 13 6 4.7090 9.9939 3.6235 14 7 5.1479 11.3118 3.6922 15 6 5.5990 11.8118 4.8597 16 8 5.7102 11.0858 5.8302 17 6 5.9547 13.2264 4.9603 18 1 5.7642 13.8914 4.1309 19 6 6.5426 13.7192 6.1328 20 7 6.6627 12.9454 7.1785 21 14 7.1547 15.4828 6.2008 22 1 6.1012 16.3502 6.7860 23 1 8.3761 15.5507 7.0427 24 1 7.4736 15.9494 4.8274 25 6 4.0797 9.4129 4.7216 26 6 3.6452 8.1089 4.6570 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.7065 2.1088 -0.7661 33 1 3.1902 1.1334 1.6953 34 1 2.8640 3.8053 0.1428 35 1 4.4414 3.2480 0.7511 36 1 3.5730 3.3242 3.0725 37 1 1.9958 3.8814 2.4642 38 1 4.6230 7.3806 1.4836 39 1 5.3887 9.7110 1.6069 40 1 5.1295 11.8711 2.8999 41 1 7.0700 13.2865 7.9900 42 1 3.9333 9.9861 5.6251 43 1 3.1576 7.6587 5.5090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767424577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:37 Heat of formation + Delta-G solvation = -120.006224 kcal Electronic energy + Delta-G solvation = -24266.616305 eV Core-core repulsion = 20468.659630 eV Total energy + Delta-G solvation = -3797.956675 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.64970 -40.72070 -38.77586 -37.87136 -36.96794 -35.42759 -34.58499 -33.79425 -31.99842 -31.23518 -29.67977 -28.42297 -25.63948 -24.52300 -23.79576 -22.55084 -22.35625 -21.53935 -20.52562 -19.58045 -18.92496 -18.21525 -17.72306 -17.59857 -17.54363 -16.15294 -15.82835 -15.75695 -15.62538 -15.57527 -15.05043 -14.77250 -14.69543 -14.47411 -14.27976 -14.18279 -13.62593 -13.54997 -13.29193 -13.14916 -13.07466 -12.82172 -12.76346 -12.71288 -12.42809 -12.16672 -12.03306 -11.87259 -11.84491 -11.59362 -11.49679 -11.18397 -10.90911 -10.12688 -9.93559 -9.85017 -8.95253 -8.40608 -6.97254 -0.27828 0.45105 1.18082 1.37818 1.41336 1.51045 1.58231 1.69637 2.19822 2.35016 2.78940 2.87447 3.52217 3.62757 3.85988 3.91234 3.97532 4.03205 4.04847 4.19513 4.34396 4.36809 4.42713 4.46675 4.50228 4.65334 4.66060 4.76991 4.91497 5.00041 5.03340 5.09863 5.17848 5.19059 5.24424 5.32482 5.37027 5.38687 5.42136 5.67552 5.77290 5.77518 5.90487 6.12452 6.24118 6.69827 6.75601 7.25535 8.28778 8.53071 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.050217 B = 0.001759 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.450912 B =15914.555174 C =16204.815925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.170 4.170 5 C -0.080 4.080 6 C 0.067 3.933 7 O -0.348 6.348 8 C 0.523 3.477 9 O -0.546 6.546 10 C -0.186 4.186 11 C -0.018 4.018 12 C -0.176 4.176 13 C 0.209 3.791 14 N -0.685 5.685 15 C 0.525 3.475 16 O -0.603 6.603 17 C -0.562 4.562 18 H 0.098 0.902 19 C 0.030 3.970 20 N -0.811 5.811 21 Si 1.000 3.000 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.244 1.244 25 C -0.170 4.170 26 C -0.035 4.035 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.171 0.829 39 H 0.164 0.836 40 H 0.414 0.586 41 H 0.278 0.722 42 H 0.107 0.893 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 -17.262 -17.832 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.137 4.137 3 C -0.165 4.165 4 C -0.188 4.188 5 C -0.117 4.117 6 C -0.007 4.007 7 O -0.265 6.265 8 C 0.371 3.629 9 O -0.439 6.439 10 C -0.189 4.189 11 C -0.037 4.037 12 C -0.197 4.197 13 C 0.108 3.892 14 N -0.329 5.329 15 C 0.333 3.667 16 O -0.489 6.489 17 C -0.597 4.597 18 H 0.116 0.884 19 C -0.186 4.186 20 N -0.440 5.440 21 Si 0.819 3.181 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.167 1.167 25 C -0.191 4.191 26 C -0.054 4.054 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.189 0.811 39 H 0.181 0.819 40 H 0.251 0.749 41 H 0.088 0.912 42 H 0.125 0.875 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.935 -17.881 -16.679 25.417 hybrid contribution 0.124 0.847 0.646 1.073 sum -6.811 -17.034 -16.033 24.364 Atomic orbital electron populations 1.21721 0.94841 1.02188 1.01920 1.20699 0.96407 0.93689 1.02856 1.23112 0.96660 0.98044 0.98668 1.22646 0.99928 0.95867 1.00388 1.20574 1.03326 0.93145 0.94647 1.23208 0.99608 0.77705 1.00139 1.86501 1.74758 1.27513 1.37707 1.21110 0.74985 0.86701 0.80141 1.90796 1.42325 1.72257 1.38478 1.18947 1.11290 0.91203 0.97445 1.21431 0.91236 0.93682 0.97351 1.21179 1.05640 0.94469 0.98374 1.18539 0.89691 0.86107 0.94829 1.43782 1.64635 1.10163 1.14275 1.18806 0.77285 0.89777 0.80839 1.90621 1.58531 1.61692 1.38017 1.21430 1.43120 0.92401 1.02783 0.88443 1.27012 0.93374 1.04569 0.93694 1.70145 1.32147 1.38997 1.02723 0.84954 0.78047 0.75048 0.80015 1.18775 1.19885 1.16740 1.21035 1.01876 0.96371 0.99829 1.20988 0.95299 0.92457 0.96658 0.92250 0.91778 0.93327 0.90167 0.91518 0.86599 0.86737 0.89647 0.89161 0.91382 0.91497 0.81120 0.81858 0.74902 0.91161 0.87498 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.89 71.98 0.71 -0.69 16 2 C -0.10 -0.97 6.38 29.85 0.19 -0.78 16 3 C -0.15 -1.69 9.12 25.65 0.23 -1.46 16 4 C -0.17 -2.18 9.12 25.65 0.23 -1.95 16 5 C -0.08 -1.12 6.04 29.85 0.18 -0.94 16 6 C 0.07 1.35 5.46 71.98 0.39 1.74 16 7 O -0.35 -8.67 9.46 -56.68 -0.54 -9.21 16 8 C 0.52 16.45 7.89 70.25 0.55 17.00 16 9 O -0.55 -20.08 16.13 19.82 0.32 -19.76 16 10 C -0.19 -6.07 5.88 -20.07 -0.12 -6.19 16 11 C -0.02 -0.50 9.60 22.51 0.22 -0.28 16 12 C -0.18 -5.17 9.94 22.37 0.22 -4.95 16 13 C 0.21 8.26 6.27 38.49 0.24 8.50 16 14 N -0.69 -29.13 5.30 -307.51 -1.63 -30.76 16 15 C 0.53 28.81 7.46 86.31 0.64 29.46 16 16 O -0.60 -38.39 12.69 -4.40 -0.06 -38.44 16 17 C -0.56 -29.76 9.53 24.80 0.24 -29.53 16 18 H 0.10 4.51 7.86 -2.91 -0.02 4.49 16 19 C 0.03 1.60 5.50 85.33 0.47 2.07 16 20 N -0.81 -47.53 11.85 21.85 0.26 -47.27 16 21 Si 1.00 38.50 29.56 68.60 2.03 40.53 16 22 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 23 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 24 H -0.24 -8.61 7.11 99.48 0.71 -7.90 16 25 C -0.17 -7.41 8.62 22.37 0.19 -7.22 16 26 C -0.03 -1.33 9.58 22.51 0.22 -1.12 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.65 7.79 -2.39 -0.02 0.63 16 32 H 0.12 1.20 7.84 -2.91 -0.02 1.17 16 33 H 0.11 1.39 7.84 -2.91 -0.02 1.37 16 34 H 0.08 1.09 7.79 -2.39 -0.02 1.07 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.17 3.29 7.60 -2.91 -0.02 3.27 16 39 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 40 H 0.41 14.19 8.79 -92.71 -0.81 13.37 16 41 H 0.28 14.77 8.29 -92.71 -0.77 14.00 16 42 H 0.11 5.51 6.39 -2.91 -0.02 5.49 16 43 H 0.13 4.78 7.64 -2.91 -0.02 4.76 16 Total: -1.00 -73.94 375.49 5.41 -68.53 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.21 Total: 32.72 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 4.82 Total: 3.67 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -1.37 Total: -78.02 kcal Atomic # 8 Polarization: -67.14 SS G_CDS: -0.27 Total: -67.42 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -73.94 5.41 -68.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767424577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.481 kcal (2) G-P(sol) polarization free energy of solvation -73.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds