Wall clock time and date at job start Tue Mar 31 2020 11:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.31847 * 122.58595 * 2 1 4 4 C 1.50704 * 124.25501 * 0.06156 * 3 2 1 5 5 N 1.46501 * 109.47230 * 89.98703 * 4 3 2 6 6 C 1.36931 * 119.99988 * 89.99444 * 5 4 3 7 7 H 1.07998 * 120.00283 * 306.42449 * 6 5 4 8 8 C 1.38813 * 119.99786 * 126.42400 * 6 5 4 9 9 N 1.31621 * 119.99860 * 160.64566 * 8 6 5 10 10 Si 1.86805 * 120.00054 * 340.65182 * 8 6 5 11 11 H 1.48504 * 109.47045 * 92.95421 * 10 8 6 12 12 H 1.48495 * 109.47108 * 212.95535 * 10 8 6 13 13 H 1.48496 * 109.46771 * 332.95572 * 10 8 6 14 14 C 1.46497 * 119.99588 * 269.99561 * 5 4 3 15 15 C 1.53004 * 117.49537 * 182.40938 * 14 5 4 16 16 C 1.53001 * 60.00254 * 252.51378 * 15 14 5 17 17 S 1.75339 * 111.48376 * 180.02562 * 3 2 1 18 18 C 1.75728 * 92.21624 * 359.97438 * 17 3 2 19 19 N 1.33602 * 131.36004 * 180.02562 * 18 17 3 20 20 C 1.31303 * 120.84079 * 179.97438 * 19 18 17 21 21 C 1.50700 * 118.95164 * 180.02562 * 20 19 18 22 22 N 1.32136 * 122.10273 * 359.97438 * 20 19 18 23 23 C 1.31762 * 121.33805 * 0.02562 * 22 20 19 24 24 C 1.50698 * 120.46096 * 179.97438 * 23 22 20 25 25 C 1.40183 * 109.57856 * 0.23848 * 18 17 3 26 26 H 1.08998 * 109.47396 * 95.57487 * 1 2 3 27 27 H 1.09007 * 109.47001 * 215.56584 * 1 2 3 28 28 H 1.08998 * 109.47469 * 335.56809 * 1 2 3 29 29 H 1.09007 * 109.46508 * 209.98576 * 4 3 2 30 30 H 1.09002 * 109.47182 * 329.98100 * 4 3 2 31 31 H 0.97001 * 119.99924 * 180.02562 * 9 8 6 32 32 H 1.08997 * 115.55707 * 328.12303 * 14 5 4 33 33 H 1.08997 * 117.50247 * 0.02562 * 15 14 5 34 34 H 1.09002 * 117.49600 * 145.02263 * 15 14 5 35 35 H 1.09002 * 117.49785 * 252.51491 * 16 15 14 36 36 H 1.08993 * 117.49926 * 107.48677 * 16 15 14 37 37 H 1.09000 * 109.47198 * 269.98006 * 21 20 19 38 38 H 1.09010 * 109.46694 * 29.97564 * 21 20 19 39 39 H 1.08994 * 109.47230 * 149.97547 * 21 20 19 40 40 H 1.09000 * 109.47396 * 96.02082 * 24 23 22 41 41 H 1.09002 * 109.47024 * 216.01792 * 24 23 22 42 42 H 1.08999 * 109.47050 * 336.01135 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1109 0.0000 4 6 1.6244 2.4965 0.0013 5 7 1.4333 2.9446 1.3830 6 6 2.4343 3.6203 2.0283 7 1 3.4263 3.1963 2.0793 8 6 2.1740 4.8503 2.6168 9 7 2.9840 5.3223 3.5407 10 14 0.6742 5.8354 2.0977 11 1 -0.4640 5.5146 2.9960 12 1 0.9802 7.2859 2.1851 13 1 0.3141 5.4888 0.6994 14 6 0.1712 2.6697 2.0741 15 6 0.0116 3.2124 3.4958 16 6 0.2131 1.7130 3.2675 17 16 3.9376 0.7733 -0.0007 18 6 3.6662 -0.9629 -0.0003 19 7 4.5206 -1.9900 0.0000 20 6 4.0843 -3.2285 0.0008 21 6 5.0857 -4.3546 0.0017 22 7 2.7953 -3.5189 0.0020 23 6 1.8794 -2.5717 0.0018 24 6 0.4145 -2.9254 0.0025 25 6 2.2887 -1.2230 -0.0051 26 1 -0.3634 -0.0998 -1.0228 27 1 -0.3633 -0.8360 0.5978 28 1 -0.3634 0.9356 0.4250 29 1 2.2995 3.1809 -0.5125 30 1 0.6629 2.4809 -0.5119 31 1 2.8020 6.1816 3.9522 32 1 -0.7161 2.6464 1.4414 33 1 0.8454 3.7743 3.9166 34 1 -0.9809 3.5465 3.7985 35 1 -0.6467 1.0607 3.4200 36 1 1.1797 1.2882 3.5382 37 1 5.3269 -4.6271 -1.0258 38 1 5.9924 -4.0342 0.5150 39 1 4.6622 -5.2170 0.5164 40 1 0.0363 -2.9053 1.0246 41 1 -0.1340 -2.2029 -0.6020 42 1 0.2815 -3.9235 -0.4147 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769098599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:39 Heat of formation + Delta-G solvation = 112.561294 kcal Electronic energy + Delta-G solvation = -24576.174782 eV Core-core repulsion = 21263.348614 eV Total energy + Delta-G solvation = -3312.826168 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00273 -37.94618 -36.58064 -34.38813 -33.36825 -32.36410 -31.28042 -29.75535 -28.43442 -27.61860 -25.03287 -23.70013 -23.30347 -21.81661 -21.58607 -20.01819 -19.09965 -17.84508 -16.86576 -16.81049 -15.84025 -15.59942 -15.26892 -14.73836 -14.28630 -13.94951 -13.71265 -13.42947 -13.23560 -13.17826 -12.97702 -12.83637 -12.62517 -12.43479 -12.38102 -12.10028 -11.95040 -11.62378 -11.19463 -11.13444 -10.86862 -10.72072 -10.61376 -10.46888 -10.34830 -10.32378 -9.90341 -9.58655 -9.23265 -9.07462 -8.60766 -8.37048 -7.66700 -6.67050 -6.13852 -3.80046 0.63862 1.04329 1.47742 2.27507 2.43168 3.31768 3.41629 3.46875 3.73633 3.94098 4.22198 4.43053 4.63971 4.71552 4.78488 4.83023 5.02339 5.19518 5.25165 5.40401 5.44094 5.48852 5.52005 5.59832 5.67167 5.71822 5.73576 5.77056 5.88750 5.93749 5.96068 6.04366 6.10838 6.29877 6.37938 6.44794 6.49921 6.52694 6.73426 6.97019 7.05309 7.27002 7.96767 8.16699 8.38178 8.85512 9.51592 9.96782 10.96344 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.020407 B = 0.004393 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.722266 B = 6372.959037 C = 7004.109023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.091 4.091 3 C -0.143 4.143 4 C 0.205 3.795 5 N -0.559 5.559 6 C -0.294 4.294 7 H 0.074 0.926 8 C 0.064 3.936 9 N -0.889 5.889 10 Si 0.880 3.120 11 H -0.270 1.270 12 H -0.302 1.302 13 H -0.270 1.270 14 C 0.108 3.892 15 C -0.196 4.196 16 C -0.208 4.208 17 S 0.184 5.816 18 C 0.075 3.925 19 N -0.493 5.493 20 C 0.316 3.684 21 C -0.078 4.078 22 N -0.529 5.529 23 C 0.226 3.774 24 C -0.112 4.112 25 C -0.168 4.168 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.267 0.733 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 -13.732 -8.243 16.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.103 4.103 3 C -0.263 4.263 4 C 0.077 3.923 5 N -0.277 5.277 6 C -0.422 4.422 7 H 0.091 0.909 8 C -0.140 4.140 9 N -0.526 5.526 10 Si 0.707 3.293 11 H -0.196 1.196 12 H -0.230 1.230 13 H -0.194 1.194 14 C 0.001 3.999 15 C -0.233 4.233 16 C -0.249 4.249 17 S 0.446 5.554 18 C -0.176 4.176 19 N -0.210 5.210 20 C 0.045 3.955 21 C -0.137 4.137 22 N -0.246 5.246 23 C 0.071 3.929 24 C -0.169 4.169 25 C -0.183 4.183 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.140 0.860 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.939 -13.260 -8.129 15.828 hybrid contribution -2.337 0.337 0.116 2.364 sum -5.275 -12.923 -8.013 16.094 Atomic orbital electron populations 1.20795 0.89638 1.03923 1.01578 1.19072 0.96716 0.89060 1.05455 1.25439 0.95472 1.01958 1.03402 1.19631 0.98127 0.86634 0.87899 1.43543 1.13489 1.62564 1.08075 1.18555 0.91727 0.98978 1.32957 0.90888 1.25769 0.96627 0.96244 0.95360 1.69903 1.38787 1.20002 1.23952 0.86856 0.83893 0.78365 0.80148 1.19612 1.23010 1.19445 1.21323 0.89563 1.01670 0.87362 1.23530 1.02379 0.96934 1.00499 1.23314 1.01318 0.92490 1.07751 1.84588 1.05235 0.90639 1.74894 1.24202 0.92144 1.00620 1.00640 1.67793 1.38348 0.98708 1.16137 1.23032 0.89691 0.90842 0.91958 1.20490 0.95957 0.93644 1.03580 1.67889 1.02174 1.37092 1.17420 1.21596 0.96453 0.86704 0.88152 1.21026 0.88672 1.03437 1.03771 1.20497 0.94130 0.95589 1.08056 0.91644 0.91159 0.90231 0.90772 0.91606 0.92357 0.89381 0.85974 0.90703 0.91103 0.89441 0.89909 0.89770 0.89738 0.89438 0.89194 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 8.06 36.00 0.29 -0.96 16 2 C -0.09 -1.43 5.96 -103.78 -0.62 -2.05 16 3 C -0.14 -2.50 5.96 -36.21 -0.22 -2.71 16 4 C 0.21 3.74 5.59 -5.19 -0.03 3.71 16 5 N -0.56 -12.03 2.05 -167.01 -0.34 -12.37 16 6 C -0.29 -7.57 9.20 -15.06 -0.14 -7.71 16 7 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 8 C 0.06 1.70 3.54 -17.43 -0.06 1.63 16 9 N -0.89 -25.44 13.97 55.49 0.78 -24.67 16 10 Si 0.88 20.73 25.09 -169.99 -4.27 16.47 16 11 H -0.27 -6.11 5.93 56.52 0.34 -5.77 16 12 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 14 C 0.11 2.12 3.85 -67.93 -0.26 1.86 16 15 C -0.20 -4.08 6.78 -26.73 -0.18 -4.26 16 16 C -0.21 -3.97 10.37 -26.73 -0.28 -4.25 16 17 S 0.18 3.31 23.19 -107.50 -2.49 0.81 16 18 C 0.08 1.36 7.70 -16.05 -0.12 1.24 16 19 N -0.49 -8.68 10.36 -9.42 -0.10 -8.78 16 20 C 0.32 4.87 7.64 -157.32 -1.20 3.67 16 21 C -0.08 -0.84 10.31 36.01 0.37 -0.46 16 22 N -0.53 -8.09 10.22 -6.57 -0.07 -8.16 16 23 C 0.23 3.33 6.89 -81.60 -0.56 2.77 16 24 C -0.11 -1.16 8.66 36.00 0.31 -0.85 16 25 C -0.17 -2.78 6.00 -105.40 -0.63 -3.41 16 26 H 0.06 0.67 7.97 -51.93 -0.41 0.26 16 27 H 0.07 0.77 5.78 -51.93 -0.30 0.47 16 28 H 0.08 1.05 4.51 -51.93 -0.23 0.82 16 29 H 0.07 1.38 8.04 -51.92 -0.42 0.96 16 30 H 0.07 1.04 7.00 -51.93 -0.36 0.67 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.09 1.52 7.33 -51.93 -0.38 1.14 16 33 H 0.12 3.01 5.07 -51.93 -0.26 2.75 16 34 H 0.07 1.42 7.91 -51.93 -0.41 1.01 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.83 7.93 -51.93 -0.41 0.42 16 41 H 0.09 0.81 5.69 -51.93 -0.30 0.52 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -30.35 343.97 -10.29 -40.64 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.65 Total: 2.66 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -3.33 Total: -11.79 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.27 Total: -53.97 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.27 Total: 16.47 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.49 Total: 0.81 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.35 -10.29 -40.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769098599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.203 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds