Wall clock time and date at job start Tue Mar 31 2020 11:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.31847 * 122.58595 * 2 1 4 4 C 1.50704 * 124.25501 * 0.06156 * 3 2 1 5 5 N 1.46501 * 109.47230 * 89.98703 * 4 3 2 6 6 C 1.36931 * 119.99988 * 89.99444 * 5 4 3 7 7 H 1.07998 * 120.00283 * 306.42449 * 6 5 4 8 8 C 1.38813 * 119.99786 * 126.42400 * 6 5 4 9 9 N 1.31621 * 119.99860 * 160.64566 * 8 6 5 10 10 Si 1.86805 * 120.00054 * 340.65182 * 8 6 5 11 11 H 1.48504 * 109.47045 * 92.95421 * 10 8 6 12 12 H 1.48495 * 109.47108 * 212.95535 * 10 8 6 13 13 H 1.48496 * 109.46771 * 332.95572 * 10 8 6 14 14 C 1.46497 * 119.99588 * 269.99561 * 5 4 3 15 15 C 1.53004 * 117.49537 * 182.40938 * 14 5 4 16 16 C 1.53001 * 60.00254 * 252.51378 * 15 14 5 17 17 S 1.75339 * 111.48376 * 180.02562 * 3 2 1 18 18 C 1.75728 * 92.21624 * 359.97438 * 17 3 2 19 19 N 1.33602 * 131.36004 * 180.02562 * 18 17 3 20 20 C 1.31303 * 120.84079 * 179.97438 * 19 18 17 21 21 C 1.50700 * 118.95164 * 180.02562 * 20 19 18 22 22 N 1.32136 * 122.10273 * 359.97438 * 20 19 18 23 23 C 1.31762 * 121.33805 * 0.02562 * 22 20 19 24 24 C 1.50698 * 120.46096 * 179.97438 * 23 22 20 25 25 C 1.40183 * 109.57856 * 0.23848 * 18 17 3 26 26 H 1.08998 * 109.47396 * 95.57487 * 1 2 3 27 27 H 1.09007 * 109.47001 * 215.56584 * 1 2 3 28 28 H 1.08998 * 109.47469 * 335.56809 * 1 2 3 29 29 H 1.09007 * 109.46508 * 209.98576 * 4 3 2 30 30 H 1.09002 * 109.47182 * 329.98100 * 4 3 2 31 31 H 0.97001 * 119.99924 * 180.02562 * 9 8 6 32 32 H 1.08997 * 115.55707 * 328.12303 * 14 5 4 33 33 H 1.08997 * 117.50247 * 0.02562 * 15 14 5 34 34 H 1.09002 * 117.49600 * 145.02263 * 15 14 5 35 35 H 1.09002 * 117.49785 * 252.51491 * 16 15 14 36 36 H 1.08993 * 117.49926 * 107.48677 * 16 15 14 37 37 H 1.09000 * 109.47198 * 269.98006 * 21 20 19 38 38 H 1.09010 * 109.46694 * 29.97564 * 21 20 19 39 39 H 1.08994 * 109.47230 * 149.97547 * 21 20 19 40 40 H 1.09000 * 109.47396 * 96.02082 * 24 23 22 41 41 H 1.09002 * 109.47024 * 216.01792 * 24 23 22 42 42 H 1.08999 * 109.47050 * 336.01135 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1109 0.0000 4 6 1.6244 2.4965 0.0013 5 7 1.4333 2.9446 1.3830 6 6 2.4343 3.6203 2.0283 7 1 3.4263 3.1963 2.0793 8 6 2.1740 4.8503 2.6168 9 7 2.9840 5.3223 3.5407 10 14 0.6742 5.8354 2.0977 11 1 -0.4640 5.5146 2.9960 12 1 0.9802 7.2859 2.1851 13 1 0.3141 5.4888 0.6994 14 6 0.1712 2.6697 2.0741 15 6 0.0116 3.2124 3.4958 16 6 0.2131 1.7130 3.2675 17 16 3.9376 0.7733 -0.0007 18 6 3.6662 -0.9629 -0.0003 19 7 4.5206 -1.9900 0.0000 20 6 4.0843 -3.2285 0.0008 21 6 5.0857 -4.3546 0.0017 22 7 2.7953 -3.5189 0.0020 23 6 1.8794 -2.5717 0.0018 24 6 0.4145 -2.9254 0.0025 25 6 2.2887 -1.2230 -0.0051 26 1 -0.3634 -0.0998 -1.0228 27 1 -0.3633 -0.8360 0.5978 28 1 -0.3634 0.9356 0.4250 29 1 2.2995 3.1809 -0.5125 30 1 0.6629 2.4809 -0.5119 31 1 2.8020 6.1816 3.9522 32 1 -0.7161 2.6464 1.4414 33 1 0.8454 3.7743 3.9166 34 1 -0.9809 3.5465 3.7985 35 1 -0.6467 1.0607 3.4200 36 1 1.1797 1.2882 3.5382 37 1 5.3269 -4.6271 -1.0258 38 1 5.9924 -4.0342 0.5150 39 1 4.6622 -5.2170 0.5164 40 1 0.0363 -2.9053 1.0246 41 1 -0.1340 -2.2029 -0.6020 42 1 0.2815 -3.9235 -0.4147 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769098599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:38 Heat of formation + Delta-G solvation = 94.942301 kcal Electronic energy + Delta-G solvation = -24576.938799 eV Core-core repulsion = 21263.348614 eV Total energy + Delta-G solvation = -3313.590185 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.19708 -39.44392 -37.92979 -35.53573 -34.89658 -34.10000 -32.70207 -30.75765 -29.56865 -28.86919 -26.60844 -24.93913 -24.74994 -23.18248 -22.96067 -21.69399 -20.37263 -19.19365 -18.59658 -18.08027 -17.10890 -16.94981 -16.62922 -16.55042 -15.52747 -15.35349 -15.16342 -14.64881 -14.48189 -14.26870 -14.16556 -13.91873 -13.78765 -13.64462 -13.59132 -13.47462 -13.24879 -12.85731 -12.64168 -12.58695 -12.23286 -12.22613 -12.07488 -11.83063 -11.78319 -11.68505 -11.52376 -11.23906 -10.82773 -10.45531 -10.30779 -9.79150 -8.99802 -8.44014 -8.15920 -5.82838 -0.58976 -0.18574 0.16070 1.00016 1.19051 1.46155 1.49777 1.61464 2.48715 2.54872 2.91156 3.01083 3.09821 3.23900 3.40037 3.47590 3.53993 3.95562 4.16515 4.25505 4.30587 4.35197 4.47553 4.52580 4.64105 4.65315 4.68882 4.73324 4.76086 4.82283 4.90810 4.92627 4.94919 4.97561 5.02287 5.10442 5.33015 5.37666 5.44209 5.55961 5.60501 5.85631 5.98232 6.31520 6.96979 7.07601 7.56903 8.04941 8.96610 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.020407 B = 0.004393 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.722266 B = 6372.959037 C = 7004.109023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.067 4.067 3 C -0.165 4.165 4 C 0.208 3.792 5 N -0.569 5.569 6 C -0.279 4.279 7 H 0.021 0.979 8 C 0.017 3.983 9 N -0.944 5.944 10 Si 0.941 3.059 11 H -0.250 1.250 12 H -0.318 1.318 13 H -0.253 1.253 14 C 0.110 3.890 15 C -0.215 4.215 16 C -0.192 4.192 17 S 0.122 5.878 18 C 0.060 3.940 19 N -0.525 5.525 20 C 0.311 3.689 21 C -0.076 4.076 22 N -0.535 5.535 23 C 0.231 3.769 24 C -0.111 4.111 25 C -0.187 4.187 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.264 0.736 32 H 0.133 0.867 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.049 0.951 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 -16.144 -9.710 21.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.080 4.080 3 C -0.284 4.284 4 C 0.081 3.919 5 N -0.288 5.288 6 C -0.409 4.409 7 H 0.039 0.961 8 C -0.181 4.181 9 N -0.585 5.585 10 Si 0.766 3.234 11 H -0.174 1.174 12 H -0.247 1.247 13 H -0.176 1.176 14 C 0.003 3.997 15 C -0.253 4.253 16 C -0.232 4.232 17 S 0.384 5.616 18 C -0.190 4.190 19 N -0.243 5.243 20 C 0.040 3.960 21 C -0.134 4.134 22 N -0.252 5.252 23 C 0.076 3.924 24 C -0.167 4.167 25 C -0.201 4.201 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.150 0.850 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.297 -15.707 -9.622 19.813 hybrid contribution -0.882 0.835 0.576 1.344 sum -8.179 -14.872 -9.046 19.233 Atomic orbital electron populations 1.20986 0.86396 1.04739 1.04005 1.19474 0.98636 0.87863 1.02024 1.25178 0.94123 1.02153 1.06910 1.19687 0.99653 0.86521 0.86045 1.43606 1.13211 1.62588 1.09417 1.18230 0.91118 0.98982 1.32537 0.96115 1.26358 0.99578 0.97132 0.95078 1.70043 1.41731 1.20528 1.26169 0.85878 0.81062 0.75641 0.80791 1.17405 1.24732 1.17615 1.21656 0.89657 1.00966 0.87379 1.23452 1.02045 0.97881 1.01875 1.23228 1.01001 0.91991 1.06987 1.84684 1.08066 0.92687 1.76157 1.24283 0.93417 1.00049 1.01257 1.67832 1.39001 0.99489 1.18008 1.23948 0.90898 0.91063 0.90060 1.20665 0.95066 0.92609 1.05099 1.68078 1.02166 1.37010 1.17954 1.22401 0.98600 0.85717 0.85713 1.21225 0.85341 1.04949 1.05225 1.20795 0.93394 0.96913 1.09039 0.88484 0.89034 0.90404 0.92289 0.87761 0.92697 0.85000 0.90355 0.88131 0.86931 0.93172 0.87968 0.89466 0.87889 0.87819 0.87184 0.88496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 8.06 71.23 0.57 -1.43 16 2 C -0.07 -1.97 5.96 -18.89 -0.11 -2.09 16 3 C -0.17 -5.70 5.96 24.89 0.15 -5.55 16 4 C 0.21 7.34 5.59 85.63 0.48 7.82 16 5 N -0.57 -24.11 2.05 -682.31 -1.40 -25.51 16 6 C -0.28 -15.01 9.20 84.03 0.77 -14.23 16 7 H 0.02 1.33 8.06 -2.91 -0.02 1.30 16 8 C 0.02 0.96 3.54 84.86 0.30 1.26 16 9 N -0.94 -57.14 13.97 21.65 0.30 -56.84 16 10 Si 0.94 42.74 25.09 68.60 1.72 44.46 16 11 H -0.25 -10.41 5.93 99.48 0.59 -9.82 16 12 H -0.32 -15.21 7.11 99.48 0.71 -14.50 16 13 H -0.25 -10.66 7.11 99.48 0.71 -9.96 16 14 C 0.11 3.96 3.85 45.00 0.17 4.13 16 15 C -0.21 -8.53 6.78 30.60 0.21 -8.32 16 16 C -0.19 -6.84 10.37 30.60 0.32 -6.52 16 17 S 0.12 4.68 23.19 -56.49 -1.31 3.37 16 18 C 0.06 2.23 7.70 84.90 0.65 2.88 16 19 N -0.52 -18.81 10.36 -183.71 -1.90 -20.72 16 20 C 0.31 9.28 7.64 138.79 1.06 10.34 16 21 C -0.08 -1.50 10.31 71.24 0.73 -0.77 16 22 N -0.54 -15.20 10.22 -174.69 -1.79 -16.98 16 23 C 0.23 6.16 6.89 43.23 0.30 6.46 16 24 C -0.11 -1.75 8.66 71.24 0.62 -1.13 16 25 C -0.19 -5.91 6.00 -20.37 -0.12 -6.03 16 26 H 0.10 1.36 7.97 -2.39 -0.02 1.35 16 27 H 0.09 1.43 5.78 -2.38 -0.01 1.42 16 28 H 0.08 1.59 4.51 -2.39 -0.01 1.58 16 29 H 0.06 2.22 8.04 -2.38 -0.02 2.20 16 30 H 0.10 2.87 7.00 -2.39 -0.02 2.85 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.13 3.70 7.33 -2.39 -0.02 3.68 16 33 H 0.08 3.90 5.07 -2.39 -0.01 3.89 16 34 H 0.10 3.45 7.91 -2.39 -0.02 3.43 16 35 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.10 1.40 7.93 -2.39 -0.02 1.38 16 41 H 0.11 1.33 5.69 -2.39 -0.01 1.31 16 42 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -72.13 343.97 2.66 -69.48 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.93 Total: 15.92 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 6.10 Total: -13.18 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -4.79 Total: -120.04 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.72 Total: 44.46 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -1.31 Total: 3.37 kcal Total: -72.13 2.66 -69.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769098599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.419 kcal (2) G-P(sol) polarization free energy of solvation -72.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds