Wall clock time and date at job start Tue Mar 31 2020 10:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40197 * 125.97326 * 180.14908 * 4 3 2 6 6 C 1.34778 * 119.99790 * 0.27724 * 5 4 3 7 7 O 1.21590 * 120.00278 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99948 * 180.02562 * 6 5 4 9 9 N 1.40104 * 119.99720 * 0.02562 * 8 6 5 10 10 C 1.38407 * 119.99516 * 179.97438 * 9 8 6 11 11 N 1.32492 * 119.22327 * 359.73671 * 10 9 8 12 12 C 1.32276 * 120.74550 * 179.71368 * 11 10 9 13 13 C 1.38607 * 119.19091 * 0.54503 * 12 11 10 14 14 C 1.38601 * 118.56087 * 359.72891 * 13 12 11 15 15 N 1.32270 * 119.19723 * 359.97438 * 14 13 12 16 16 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 17 17 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 18 18 C 1.46500 * 125.97519 * 359.96688 * 17 2 1 19 19 C 1.50694 * 109.47447 * 89.99557 * 18 17 2 20 20 H 1.08000 * 119.99982 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00234 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99776 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00104 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47570 * 89.99977 * 23 21 19 25 25 H 1.48508 * 109.46836 * 210.00022 * 23 21 19 26 26 H 1.48498 * 109.47199 * 329.99565 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 30 30 H 1.08003 * 126.06496 * 0.04258 * 3 2 1 31 31 H 0.96996 * 119.99924 * 180.27914 * 5 4 3 32 32 H 0.96996 * 120.00230 * 179.97438 * 8 6 5 33 33 H 0.96996 * 120.00239 * 0.02562 * 9 8 6 34 34 H 1.08002 * 120.40300 * 180.26910 * 12 11 10 35 35 H 1.07998 * 120.71677 * 179.75376 * 13 12 11 36 36 H 1.07999 * 120.39842 * 180.02562 * 14 13 12 37 37 H 1.09004 * 109.46779 * 209.99960 * 18 17 2 38 38 H 1.09002 * 109.47135 * 329.99534 * 18 17 2 39 39 H 0.97000 * 119.99647 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0132 7 8 3.5278 3.3139 0.0172 8 7 5.7298 3.6047 0.0162 9 7 7.0079 3.0309 0.0111 10 6 8.1301 3.8411 0.0136 11 7 7.9778 5.1572 0.0156 12 6 9.0293 5.9597 0.0237 13 6 10.3008 5.4079 0.0187 14 6 10.4241 4.0274 0.0110 15 7 9.3314 3.2820 0.0092 16 7 3.6337 -0.6575 -0.0044 17 7 2.3017 -1.0909 -0.0060 18 6 1.8501 -2.4846 -0.0129 19 6 1.6944 -2.9552 -1.4359 20 1 1.9107 -2.2835 -2.2535 21 6 1.2769 -4.2436 -1.6943 22 7 1.0140 -5.0617 -0.6986 23 14 1.0847 -4.8272 -3.4583 24 1 2.3658 -5.4130 -3.9284 25 1 0.0158 -5.8559 -3.5256 26 1 0.7196 -3.6767 -4.3233 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9721 2.1211 0.0006 31 1 5.6587 1.0778 0.0030 32 1 5.6314 4.5697 0.0212 33 1 7.1064 2.0660 0.0050 34 1 8.8986 7.0317 0.0297 35 1 11.1764 6.0400 0.0211 36 1 11.4005 3.5659 0.0073 37 1 2.5850 -3.1071 0.4975 38 1 0.8917 -2.5585 0.5011 39 1 0.7207 -5.9682 -0.8804 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775699089.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:41 Heat of formation + Delta-G solvation = 158.896730 kcal Electronic energy + Delta-G solvation = -24834.902654 eV Core-core repulsion = 21010.085277 eV Total energy + Delta-G solvation = -3824.817377 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41553 -40.85995 -39.77261 -36.87831 -34.97433 -34.09325 -33.41878 -32.69801 -31.37628 -30.79313 -29.55650 -26.69741 -26.36076 -25.06100 -23.83457 -23.37031 -22.06279 -20.14364 -19.94985 -19.06014 -18.51893 -17.27126 -16.70515 -16.63438 -16.01483 -15.98651 -15.81902 -15.30829 -15.15744 -14.80520 -14.61494 -14.30875 -14.06422 -13.83796 -13.02879 -12.61208 -12.48547 -12.34662 -12.12106 -11.72242 -11.47324 -11.42762 -11.26540 -11.13096 -10.85659 -10.54589 -10.35239 -10.19537 -10.10027 -9.79349 -9.58209 -9.57523 -8.65310 -8.20505 -7.96012 -7.47102 -6.26517 -4.34210 0.73379 0.74519 1.35112 2.42109 2.51534 2.95435 3.21346 3.27633 3.32110 3.47701 3.48988 3.71927 3.85809 3.98514 4.29119 4.30072 4.70481 4.81039 4.97126 5.07119 5.33289 5.41690 5.61810 5.73734 5.90136 6.08242 6.09729 6.11716 6.34784 6.45829 6.56447 6.63819 6.87919 6.99268 7.04439 7.06352 7.39835 7.62537 7.66365 7.87651 7.97545 8.03257 8.32810 8.61190 8.73771 9.32265 10.80730 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.002419 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.053262 B =11573.008961 C =12442.784821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.094 3.906 3 C -0.288 4.288 4 C 0.278 3.722 5 N -0.640 5.640 6 C 0.724 3.276 7 O -0.544 6.544 8 N -0.515 5.515 9 N -0.499 5.499 10 C 0.570 3.430 11 N -0.572 5.572 12 C 0.198 3.802 13 C -0.292 4.292 14 C 0.200 3.800 15 N -0.564 5.564 16 N -0.319 5.319 17 N -0.316 5.316 18 C 0.258 3.742 19 C -0.537 4.537 20 H 0.065 0.935 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.906 3.094 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.161 0.839 31 H 0.402 0.598 32 H 0.446 0.554 33 H 0.437 0.563 34 H 0.170 0.830 35 H 0.147 0.853 36 H 0.172 0.828 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.441 19.978 2.804 25.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 C -0.319 4.319 4 C 0.025 3.975 5 N -0.292 5.292 6 C 0.422 3.578 7 O -0.414 6.414 8 N -0.274 5.274 9 N -0.235 5.235 10 C 0.213 3.787 11 N -0.295 5.295 12 C 0.031 3.969 13 C -0.318 4.318 14 C 0.032 3.968 15 N -0.287 5.287 16 N -0.150 5.150 17 N -0.098 5.098 18 C 0.141 3.859 19 C -0.575 4.575 20 H 0.083 0.917 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.196 1.196 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.178 0.822 31 H 0.237 0.763 32 H 0.294 0.706 33 H 0.283 0.717 34 H 0.187 0.813 35 H 0.164 0.836 36 H 0.189 0.811 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.150 18.271 2.846 23.284 hybrid contribution 0.959 0.531 -0.947 1.449 sum 15.109 18.803 1.899 24.196 Atomic orbital electron populations 1.20388 0.87811 1.03940 1.02593 1.21064 0.94972 0.87027 1.00699 1.21212 0.89533 0.99885 1.21296 1.18599 0.86235 0.89338 1.03362 1.41346 1.07750 1.03624 1.76486 1.15352 0.83071 0.80771 0.78582 1.90996 1.20461 1.72741 1.57242 1.44454 0.92216 1.09224 1.81460 1.42529 0.93775 1.06580 1.80645 1.18832 0.85081 0.85555 0.89281 1.67753 1.36043 1.03272 1.22465 1.22950 0.87139 0.99854 0.86972 1.22578 1.00066 0.97467 1.11683 1.22958 0.96220 0.90550 0.87026 1.67730 0.97435 1.41234 1.22323 1.77250 1.00137 1.08112 1.29479 1.49000 1.00773 1.07837 1.52203 1.19705 0.96020 0.71253 0.98954 1.21324 1.46837 0.97992 0.91358 0.91723 1.24931 0.94663 0.96050 0.98145 1.69922 1.44905 1.06951 1.31140 0.86354 0.78015 0.78570 0.83741 1.20348 1.20869 1.19647 0.91017 0.89860 0.90543 0.82202 0.76280 0.70632 0.71721 0.81256 0.83553 0.81093 0.92968 0.92699 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.89 36.01 0.36 -1.16 16 2 C 0.09 1.97 6.93 -82.28 -0.57 1.40 16 3 C -0.29 -5.91 9.52 -39.83 -0.38 -6.29 16 4 C 0.28 5.64 8.11 -154.36 -1.25 4.39 16 5 N -0.64 -10.05 5.41 -15.51 -0.08 -10.13 16 6 C 0.72 10.87 8.64 -86.92 -0.75 10.12 16 7 O -0.54 -9.78 14.31 5.29 0.08 -9.70 16 8 N -0.51 -6.00 6.28 27.63 0.17 -5.83 16 9 N -0.50 -5.17 6.42 29.76 0.19 -4.98 16 10 C 0.57 5.92 8.54 -322.80 -2.76 3.16 16 11 N -0.57 -5.44 9.38 -13.93 -0.13 -5.57 16 12 C 0.20 1.26 11.30 -17.22 -0.19 1.07 16 13 C -0.29 -1.48 10.16 -39.31 -0.40 -1.88 16 14 C 0.20 1.28 11.30 -17.23 -0.19 1.09 16 15 N -0.56 -5.38 10.46 -13.93 -0.15 -5.53 16 16 N -0.32 -7.31 12.59 31.44 0.40 -6.92 16 17 N -0.32 -7.44 3.59 -58.33 -0.21 -7.65 16 18 C 0.26 6.58 5.81 -5.20 -0.03 6.55 16 19 C -0.54 -14.71 9.39 -34.44 -0.32 -15.03 16 20 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 23 Si 0.91 21.08 29.54 -169.99 -5.02 16.06 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.16 3.19 5.91 -52.48 -0.31 2.88 16 31 H 0.40 5.15 6.74 -40.82 -0.28 4.88 16 32 H 0.45 4.90 8.01 -182.60 -1.46 3.44 16 33 H 0.44 4.07 6.82 -182.60 -1.24 2.83 16 34 H 0.17 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 36 H 0.17 0.53 8.06 -52.49 -0.42 0.10 16 37 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.06 1.38 7.65 -51.93 -0.40 0.98 16 39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -33.85 345.19 -11.58 -45.43 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.17 Total: 8.73 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -6.59 Total: 5.10 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: 0.93 Total: -70.81 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.85 -11.58 -45.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775699089.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.326 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds