Wall clock time and date at job start Tue Mar 31 2020 10:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40197 * 125.97326 * 180.14908 * 4 3 2 6 6 C 1.34778 * 119.99790 * 0.27724 * 5 4 3 7 7 O 1.21590 * 120.00278 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99948 * 180.02562 * 6 5 4 9 9 N 1.40104 * 119.99720 * 0.02562 * 8 6 5 10 10 C 1.38407 * 119.99516 * 179.97438 * 9 8 6 11 11 N 1.32492 * 119.22327 * 359.73671 * 10 9 8 12 12 C 1.32276 * 120.74550 * 179.71368 * 11 10 9 13 13 C 1.38607 * 119.19091 * 0.54503 * 12 11 10 14 14 C 1.38601 * 118.56087 * 359.72891 * 13 12 11 15 15 N 1.32270 * 119.19723 * 359.97438 * 14 13 12 16 16 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 17 17 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 18 18 C 1.46500 * 125.97519 * 359.96688 * 17 2 1 19 19 C 1.50694 * 109.47447 * 89.99557 * 18 17 2 20 20 H 1.08000 * 119.99982 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00234 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99776 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00104 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47570 * 89.99977 * 23 21 19 25 25 H 1.48508 * 109.46836 * 210.00022 * 23 21 19 26 26 H 1.48498 * 109.47199 * 329.99565 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 30 30 H 1.08003 * 126.06496 * 0.04258 * 3 2 1 31 31 H 0.96996 * 119.99924 * 180.27914 * 5 4 3 32 32 H 0.96996 * 120.00230 * 179.97438 * 8 6 5 33 33 H 0.96996 * 120.00239 * 0.02562 * 9 8 6 34 34 H 1.08002 * 120.40300 * 180.26910 * 12 11 10 35 35 H 1.07998 * 120.71677 * 179.75376 * 13 12 11 36 36 H 1.07999 * 120.39842 * 180.02562 * 14 13 12 37 37 H 1.09004 * 109.46779 * 209.99960 * 18 17 2 38 38 H 1.09002 * 109.47135 * 329.99534 * 18 17 2 39 39 H 0.97000 * 119.99647 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0132 7 8 3.5278 3.3139 0.0172 8 7 5.7298 3.6047 0.0162 9 7 7.0079 3.0309 0.0111 10 6 8.1301 3.8411 0.0136 11 7 7.9778 5.1572 0.0156 12 6 9.0293 5.9597 0.0237 13 6 10.3008 5.4079 0.0187 14 6 10.4241 4.0274 0.0110 15 7 9.3314 3.2820 0.0092 16 7 3.6337 -0.6575 -0.0044 17 7 2.3017 -1.0909 -0.0060 18 6 1.8501 -2.4846 -0.0129 19 6 1.6944 -2.9552 -1.4359 20 1 1.9107 -2.2835 -2.2535 21 6 1.2769 -4.2436 -1.6943 22 7 1.0140 -5.0617 -0.6986 23 14 1.0847 -4.8272 -3.4583 24 1 2.3658 -5.4130 -3.9284 25 1 0.0158 -5.8559 -3.5256 26 1 0.7196 -3.6767 -4.3233 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9721 2.1211 0.0006 31 1 5.6587 1.0778 0.0030 32 1 5.6314 4.5697 0.0212 33 1 7.1064 2.0660 0.0050 34 1 8.8986 7.0317 0.0297 35 1 11.1764 6.0400 0.0211 36 1 11.4005 3.5659 0.0073 37 1 2.5850 -3.1071 0.4975 38 1 0.8917 -2.5585 0.5011 39 1 0.7207 -5.9682 -0.8804 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775699089.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:40 Heat of formation + Delta-G solvation = 137.242725 kcal Electronic energy + Delta-G solvation = -24835.841642 eV Core-core repulsion = 21010.085277 eV Total energy + Delta-G solvation = -3825.756365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.46963 -41.94360 -41.07691 -37.81418 -36.46977 -35.30937 -34.67849 -33.61291 -32.85480 -32.54429 -30.32551 -28.58097 -27.88718 -25.69413 -25.10310 -24.47840 -23.49696 -21.50385 -21.29302 -19.91925 -19.77652 -18.79119 -18.07526 -17.68181 -17.32931 -17.10295 -16.70643 -16.46881 -16.28571 -16.16084 -15.85689 -15.67516 -15.25417 -14.70381 -14.35927 -14.27235 -13.82256 -13.74142 -13.58881 -13.28486 -13.11744 -12.85168 -12.69307 -12.27266 -12.16281 -12.00326 -11.87626 -11.72849 -11.43360 -11.37754 -10.83030 -10.73570 -10.16826 -9.64203 -9.23787 -8.86810 -8.32681 -6.50091 0.17228 0.23797 0.46334 0.96116 1.12891 1.37975 1.38869 1.49544 1.52991 2.12699 2.21819 2.35947 2.91367 2.93752 2.97192 3.36727 3.77078 3.91227 4.05485 4.11512 4.37987 4.43404 4.53111 4.69987 4.79012 4.84204 4.89580 4.92598 4.97187 5.05806 5.13003 5.19829 5.52676 5.53901 5.69551 5.81295 5.87863 5.96350 6.25144 6.27532 6.52606 6.62592 6.98335 7.07178 7.20781 7.31592 8.73269 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.002419 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.053262 B =11573.008961 C =12442.784821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.091 3.909 3 C -0.296 4.296 4 C 0.289 3.711 5 N -0.633 5.633 6 C 0.727 3.273 7 O -0.575 6.575 8 N -0.496 5.496 9 N -0.504 5.504 10 C 0.549 3.451 11 N -0.593 5.593 12 C 0.183 3.817 13 C -0.272 4.272 14 C 0.185 3.815 15 N -0.585 5.585 16 N -0.355 5.355 17 N -0.341 5.341 18 C 0.275 3.725 19 C -0.553 4.553 20 H 0.049 0.951 21 C 0.023 3.977 22 N -0.917 5.917 23 Si 0.970 3.030 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.270 1.270 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.169 0.831 31 H 0.415 0.585 32 H 0.451 0.549 33 H 0.439 0.561 34 H 0.202 0.798 35 H 0.184 0.816 36 H 0.203 0.797 37 H 0.025 0.975 38 H 0.054 0.946 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.821 21.753 2.140 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.040 4.040 3 C -0.327 4.327 4 C 0.034 3.966 5 N -0.286 5.286 6 C 0.425 3.575 7 O -0.448 6.448 8 N -0.253 5.253 9 N -0.243 5.243 10 C 0.191 3.809 11 N -0.317 5.317 12 C 0.018 3.982 13 C -0.296 4.296 14 C 0.019 3.981 15 N -0.309 5.309 16 N -0.185 5.185 17 N -0.123 5.123 18 C 0.156 3.844 19 C -0.591 4.591 20 H 0.068 0.932 21 C -0.178 4.178 22 N -0.555 5.555 23 Si 0.794 3.206 24 H -0.201 1.201 25 H -0.195 1.195 26 H -0.194 1.194 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.186 0.814 31 H 0.253 0.747 32 H 0.300 0.700 33 H 0.285 0.715 34 H 0.218 0.782 35 H 0.201 0.799 36 H 0.219 0.781 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.622 20.111 2.192 25.560 hybrid contribution 0.752 0.181 -0.692 1.038 sum 16.374 20.293 1.500 26.118 Atomic orbital electron populations 1.20517 0.85209 1.04473 1.04208 1.21750 0.96733 0.86284 0.99213 1.21397 0.89673 1.00059 1.21578 1.18850 0.87654 0.88977 1.01143 1.41268 1.07251 1.03647 1.76416 1.15301 0.83402 0.80396 0.78403 1.90961 1.21993 1.73198 1.58601 1.44058 0.92493 1.08943 1.79801 1.42497 0.93052 1.06726 1.82015 1.18966 0.85208 0.86047 0.90660 1.67766 1.37682 1.03134 1.23075 1.23631 0.87131 1.01107 0.86365 1.23001 1.00822 0.97281 1.08520 1.23644 0.96524 0.91482 0.86458 1.67735 0.97841 1.42347 1.22952 1.77172 1.00257 1.09489 1.31610 1.48796 1.01533 1.07584 1.54421 1.19268 0.95006 0.72319 0.97782 1.21437 1.47509 0.98365 0.91783 0.93230 1.25720 0.93982 0.95917 1.02183 1.70001 1.45099 1.07384 1.33063 0.85370 0.78243 0.78197 0.78766 1.20061 1.19507 1.19449 0.88769 0.91348 0.87858 0.81380 0.74743 0.70009 0.71504 0.78182 0.79897 0.78060 0.95660 0.92834 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.86 9.89 71.24 0.70 -2.15 16 2 C 0.09 3.82 6.93 41.39 0.29 4.11 16 3 C -0.30 -12.17 9.52 22.11 0.21 -11.96 16 4 C 0.29 11.86 8.11 133.31 1.08 12.94 16 5 N -0.63 -19.94 5.41 -321.23 -1.74 -21.68 16 6 C 0.73 21.73 8.64 179.05 1.55 23.28 16 7 O -0.57 -20.57 14.31 -4.00 -0.06 -20.62 16 8 N -0.50 -11.42 6.28 -184.74 -1.16 -12.58 16 9 N -0.50 -10.34 6.42 -59.75 -0.38 -10.72 16 10 C 0.55 10.99 8.54 261.48 2.23 13.23 16 11 N -0.59 -10.52 9.38 -197.98 -1.86 -12.37 16 12 C 0.18 1.87 11.30 84.71 0.96 2.83 16 13 C -0.27 -1.84 10.16 22.44 0.23 -1.62 16 14 C 0.18 1.92 11.30 84.71 0.96 2.88 16 15 N -0.58 -10.52 10.46 -197.99 -2.07 -12.59 16 16 N -0.35 -16.70 12.59 -54.44 -0.69 -17.39 16 17 N -0.34 -16.52 3.59 -338.44 -1.22 -17.73 16 18 C 0.28 14.54 5.81 85.63 0.50 15.03 16 19 C -0.55 -31.00 9.39 25.60 0.24 -30.76 16 20 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 21 C 0.02 1.26 5.46 84.65 0.46 1.72 16 22 N -0.92 -51.79 13.29 21.45 0.28 -51.51 16 23 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.07 2.49 7.71 -2.39 -0.02 2.47 16 29 H 0.10 2.84 8.14 -2.38 -0.02 2.82 16 30 H 0.17 6.65 5.91 -2.91 -0.02 6.63 16 31 H 0.41 10.73 6.74 -92.71 -0.63 10.10 16 32 H 0.45 9.72 8.01 -213.32 -1.71 8.01 16 33 H 0.44 8.22 6.82 -213.32 -1.45 6.77 16 34 H 0.20 0.58 8.06 -2.91 -0.02 0.55 16 35 H 0.18 -0.14 8.06 -2.91 -0.02 -0.16 16 36 H 0.20 0.63 8.06 -2.91 -0.02 0.60 16 37 H 0.03 1.44 8.14 -2.38 -0.02 1.43 16 38 H 0.05 2.79 7.65 -2.39 -0.02 2.77 16 39 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -74.40 345.19 -0.10 -74.50 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -2.64 Total: 27.96 kcal Atomic # 6 Polarization: 20.11 SS G_CDS: 9.40 Total: 29.52 kcal Atomic # 7 Polarization: -147.74 SS G_CDS: -8.83 Total: -156.57 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.06 Total: -20.62 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -74.40 -0.10 -74.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775699089.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.742 kcal (2) G-P(sol) polarization free energy of solvation -74.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds