Wall clock time and date at job start Tue Mar 31 2020 12:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47368 * 2 1 4 4 C 1.47211 * 109.46744 * 240.00461 * 2 1 3 5 5 N 2.60804 * 109.46787 * 240.00340 * 2 1 3 6 6 C 1.53000 * 109.47208 * 120.00688 * 2 1 3 7 7 C 1.52998 * 109.46926 * 299.99573 * 6 2 1 8 8 O 1.45203 * 109.47097 * 179.97438 * 7 6 2 9 9 C 1.34225 * 117.00065 * 179.97438 * 8 7 6 10 10 O 1.20830 * 120.00117 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00089 * 180.02562 * 9 8 7 12 12 C 1.50695 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.38299 * 119.93247 * 90.00201 * 12 11 9 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47517 * 59.99414 * 21 19 17 23 23 H 1.48505 * 109.47332 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46989 * 299.99567 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.09002 * 109.46580 * 299.99374 * 1 2 3 28 28 H 1.08999 * 109.47033 * 59.99313 * 1 2 3 29 29 H 1.09005 * 109.46977 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47603 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47603 * 300.00869 * 3 2 1 32 32 H 1.09002 * 109.46759 * 60.00735 * 3 2 1 33 33 H 1.09000 * 109.46876 * 179.97438 * 6 2 1 34 34 H 1.09005 * 109.47364 * 59.99977 * 6 2 1 35 35 H 1.09005 * 109.47055 * 60.00536 * 7 6 2 36 36 H 1.08992 * 109.47430 * 300.00049 * 7 6 2 37 37 H 1.08998 * 109.46621 * 60.00590 * 11 9 8 38 38 H 1.08996 * 109.47266 * 300.00254 * 11 9 8 39 39 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 40 40 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 41 41 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 43 43 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0206 -0.6939 -1.2021 5 7 2.3992 -1.2293 -2.1296 6 6 2.0400 -0.7214 1.2491 7 6 1.5301 -0.0002 2.4984 8 8 2.0136 -0.6852 3.6839 9 6 1.6534 -0.1749 4.8720 10 8 0.9567 0.8111 4.9199 11 6 2.1179 -0.8319 6.1463 12 6 1.5791 -0.0700 7.3296 13 6 0.3538 -0.4131 7.8714 14 6 -0.1426 0.2828 8.9561 15 6 0.5900 1.3286 9.5025 16 8 0.1051 2.0143 10.5690 17 6 -1.0370 1.5584 11.1219 18 1 -1.5667 0.7352 10.6658 19 6 -1.5314 2.1465 12.2762 20 7 -0.8859 3.1490 12.8321 21 14 -3.1133 1.5144 13.0426 22 1 -2.9486 0.0852 13.4104 23 1 -3.4241 2.3057 14.2603 24 1 -4.2245 1.6496 12.0669 25 6 1.8172 1.6749 8.9522 26 6 2.3107 0.9713 7.8711 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9564 -0.8898 32 1 1.6768 1.9562 0.8901 33 1 3.1300 -0.7218 1.2489 34 1 1.6767 -1.7491 1.2491 35 1 0.4401 -0.0002 2.4985 36 1 1.8934 1.0274 2.4985 37 1 3.2074 -0.8315 6.1790 38 1 1.7537 -1.8587 6.1794 39 1 -0.2152 -1.2267 7.4463 40 1 -1.0992 0.0141 9.3789 41 1 -1.2319 3.5606 13.6394 42 1 2.3871 2.4905 9.3721 43 1 3.2670 1.2372 7.4455 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776384743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:28 Heat of formation + Delta-G solvation = -75.666118 kcal Electronic energy + Delta-G solvation = -24738.485348 eV Core-core repulsion = 20942.451405 eV Total energy + Delta-G solvation = -3796.033944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.55510 -39.14546 -38.80124 -36.96747 -36.23265 -35.52682 -32.54416 -31.60267 -30.20432 -30.03540 -27.99691 -26.97083 -25.47419 -25.02001 -22.12429 -22.00114 -21.25344 -20.20062 -18.02351 -17.98032 -17.11031 -17.03992 -16.75429 -16.09967 -15.30712 -15.16896 -14.77562 -14.63673 -14.39279 -14.18328 -14.04659 -13.64133 -13.53256 -13.45330 -13.00434 -12.98083 -12.74273 -12.64795 -12.50661 -12.46240 -12.14389 -11.86589 -11.69244 -11.58028 -11.45444 -11.41533 -11.29149 -10.91408 -10.80035 -10.67641 -10.58934 -10.45800 -10.30360 -9.36157 -8.84638 -8.19424 -7.22362 -6.46854 -4.05533 2.02904 2.21558 2.28054 2.31659 2.33775 2.79610 3.12437 3.13589 3.16184 3.33534 3.95337 4.16833 4.18069 4.31950 4.50206 4.66049 4.66064 4.89883 5.00840 5.06340 5.08549 5.12084 5.19321 5.22213 5.24599 5.28282 5.36068 5.37406 5.51393 5.61779 5.66222 5.68683 5.69235 5.80809 6.18298 6.37300 6.40100 6.67040 6.87675 7.02136 7.08750 7.19668 7.31749 7.41729 7.79019 7.87523 7.98006 8.98486 9.68062 10.70878 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027557 B = 0.001987 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.828291 B =14087.810364 C =14402.307069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.040 3.960 3 C -0.151 4.151 4 C 0.217 3.783 5 N -0.431 5.431 6 C -0.110 4.110 7 C 0.063 3.937 8 O -0.364 6.364 9 C 0.456 3.544 10 O -0.490 6.490 11 C -0.050 4.050 12 C -0.184 4.184 13 C -0.053 4.053 14 C -0.234 4.234 15 C 0.159 3.841 16 O -0.175 6.175 17 C -0.392 4.392 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.192 4.192 26 C -0.056 4.056 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.271 0.729 42 H 0.118 0.882 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.638 -7.107 -20.403 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.036 3.964 3 C -0.209 4.209 4 C -0.101 4.101 5 N -0.105 5.105 6 C -0.148 4.148 7 C -0.011 4.011 8 O -0.282 6.282 9 C 0.298 3.702 10 O -0.375 6.375 11 C -0.087 4.087 12 C -0.185 4.185 13 C -0.071 4.071 14 C -0.253 4.253 15 C 0.105 3.895 16 O -0.078 6.078 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.211 4.211 26 C -0.075 4.075 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.145 0.855 41 H 0.081 0.919 42 H 0.136 0.864 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.036 -7.239 -21.495 23.233 hybrid contribution -1.073 -0.026 0.577 1.219 sum 3.963 -7.264 -20.918 22.495 Atomic orbital electron populations 1.22041 0.91027 1.03745 1.04075 1.18155 0.97125 0.94900 0.86217 1.22037 1.02314 0.92456 1.04076 1.28974 0.93332 0.93508 0.94311 1.81239 1.08773 1.09124 1.11378 1.21555 1.02725 1.00303 0.90264 1.23063 0.99872 0.96288 0.81881 1.86483 1.70549 1.56199 1.14987 1.24227 0.77903 0.83147 0.84952 1.90710 1.34390 1.25015 1.87395 1.20096 1.02508 0.99675 0.86470 1.18630 0.98097 1.02215 0.99588 1.20531 0.93944 0.97827 0.94829 1.21109 1.02614 1.00754 1.00803 1.19411 0.91928 0.89966 0.88196 1.83976 1.38863 1.47418 1.37583 1.21293 0.98873 1.18179 1.08511 0.89049 1.25301 0.99528 0.96028 0.95645 1.70027 1.38548 1.21345 1.19676 0.85775 0.80164 0.78822 0.78638 1.19478 1.20266 1.19479 1.20160 0.96023 1.04355 1.00608 1.20423 0.98206 0.94013 0.94820 0.89816 0.91227 0.91256 0.91251 0.91224 0.89822 0.89619 0.89626 0.90505 0.90487 0.87755 0.87802 0.87630 0.85472 0.91925 0.86416 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 8.08 37.16 0.30 -0.33 16 2 C 0.04 0.20 0.72 -157.29 -0.11 0.09 16 3 C -0.15 -0.62 8.08 37.15 0.30 -0.32 16 4 C 0.22 1.69 13.86 -20.76 -0.29 1.40 16 5 N -0.43 -4.64 18.54 42.15 0.78 -3.86 16 6 C -0.11 -0.61 4.61 -26.73 -0.12 -0.73 16 7 C 0.06 0.48 4.76 37.16 0.18 0.66 16 8 O -0.36 -3.74 10.22 -39.24 -0.40 -4.14 16 9 C 0.46 5.86 7.95 36.01 0.29 6.14 16 10 O -0.49 -8.09 15.78 -18.75 -0.30 -8.39 16 11 C -0.05 -0.59 5.94 -29.04 -0.17 -0.76 16 12 C -0.18 -3.01 4.38 -104.58 -0.46 -3.47 16 13 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 14 C -0.23 -5.03 9.17 -39.39 -0.36 -5.39 16 15 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 16 O -0.18 -4.98 9.76 0.05 0.00 -4.98 16 17 C -0.39 -10.88 9.49 30.89 0.29 -10.58 16 18 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.05 13.67 55.48 0.76 -24.30 16 21 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 C -0.19 -4.03 9.99 -39.39 -0.39 -4.42 16 26 C -0.06 -0.98 9.69 -39.61 -0.38 -1.37 16 27 H 0.08 0.32 6.43 -51.93 -0.33 -0.01 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.32 6.43 -51.93 -0.33 -0.02 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.57 6.42 -51.93 -0.33 0.24 16 36 H 0.08 0.57 6.42 -51.93 -0.33 0.23 16 37 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 41 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -33.95 371.43 -5.94 -39.90 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.68 Total: 0.78 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -1.68 Total: -15.88 kcal Atomic # 7 Polarization: -29.69 SS G_CDS: 1.54 Total: -28.15 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.70 Total: -17.51 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.95 -5.94 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776384743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.770 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds