Wall clock time and date at job start Tue Mar 31 2020 12:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47368 * 2 1 4 4 C 1.47211 * 109.46744 * 240.00461 * 2 1 3 5 5 N 2.60804 * 109.46787 * 240.00340 * 2 1 3 6 6 C 1.53000 * 109.47208 * 120.00688 * 2 1 3 7 7 C 1.52998 * 109.46926 * 299.99573 * 6 2 1 8 8 O 1.45203 * 109.47097 * 179.97438 * 7 6 2 9 9 C 1.34225 * 117.00065 * 179.97438 * 8 7 6 10 10 O 1.20830 * 120.00117 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00089 * 180.02562 * 9 8 7 12 12 C 1.50695 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.38299 * 119.93247 * 90.00201 * 12 11 9 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47517 * 59.99414 * 21 19 17 23 23 H 1.48505 * 109.47332 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46989 * 299.99567 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.09002 * 109.46580 * 299.99374 * 1 2 3 28 28 H 1.08999 * 109.47033 * 59.99313 * 1 2 3 29 29 H 1.09005 * 109.46977 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47603 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47603 * 300.00869 * 3 2 1 32 32 H 1.09002 * 109.46759 * 60.00735 * 3 2 1 33 33 H 1.09000 * 109.46876 * 179.97438 * 6 2 1 34 34 H 1.09005 * 109.47364 * 59.99977 * 6 2 1 35 35 H 1.09005 * 109.47055 * 60.00536 * 7 6 2 36 36 H 1.08992 * 109.47430 * 300.00049 * 7 6 2 37 37 H 1.08998 * 109.46621 * 60.00590 * 11 9 8 38 38 H 1.08996 * 109.47266 * 300.00254 * 11 9 8 39 39 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 40 40 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 41 41 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 43 43 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0206 -0.6939 -1.2021 5 7 2.3992 -1.2293 -2.1296 6 6 2.0400 -0.7214 1.2491 7 6 1.5301 -0.0002 2.4984 8 8 2.0136 -0.6852 3.6839 9 6 1.6534 -0.1749 4.8720 10 8 0.9567 0.8111 4.9199 11 6 2.1179 -0.8319 6.1463 12 6 1.5791 -0.0700 7.3296 13 6 0.3538 -0.4131 7.8714 14 6 -0.1426 0.2828 8.9561 15 6 0.5900 1.3286 9.5025 16 8 0.1051 2.0143 10.5690 17 6 -1.0370 1.5584 11.1219 18 1 -1.5667 0.7352 10.6658 19 6 -1.5314 2.1465 12.2762 20 7 -0.8859 3.1490 12.8321 21 14 -3.1133 1.5144 13.0426 22 1 -2.9486 0.0852 13.4104 23 1 -3.4241 2.3057 14.2603 24 1 -4.2245 1.6496 12.0669 25 6 1.8172 1.6749 8.9522 26 6 2.3107 0.9713 7.8711 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9564 -0.8898 32 1 1.6768 1.9562 0.8901 33 1 3.1300 -0.7218 1.2489 34 1 1.6767 -1.7491 1.2491 35 1 0.4401 -0.0002 2.4985 36 1 1.8934 1.0274 2.4985 37 1 3.2074 -0.8315 6.1790 38 1 1.7537 -1.8587 6.1794 39 1 -0.2152 -1.2267 7.4463 40 1 -1.0992 0.0141 9.3789 41 1 -1.2319 3.5606 13.6394 42 1 2.3871 2.4905 9.3721 43 1 3.2670 1.2372 7.4455 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776384743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:27 Heat of formation + Delta-G solvation = -95.202199 kcal Electronic energy + Delta-G solvation = -24739.332496 eV Core-core repulsion = 20942.451405 eV Total energy + Delta-G solvation = -3796.881092 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.52509 -40.65383 -39.51822 -38.40236 -37.33345 -36.22231 -34.39160 -32.99654 -31.76228 -30.68110 -28.35590 -28.32247 -27.09558 -25.80943 -23.62152 -23.18350 -22.00925 -21.45132 -19.82821 -18.83609 -18.76639 -17.74029 -17.59583 -17.09181 -16.40582 -16.30997 -15.92024 -15.76243 -15.58837 -15.47791 -15.15064 -14.92195 -14.68203 -14.39609 -14.14830 -14.08130 -13.71943 -13.63273 -13.49925 -13.06461 -12.98740 -12.93201 -12.80217 -12.55101 -12.45694 -12.33842 -12.27829 -12.15155 -12.10672 -11.94850 -11.88104 -11.35974 -11.25607 -11.15968 -10.76546 -9.74416 -8.91503 -8.45506 -6.13678 0.62586 0.64054 1.36197 1.36953 1.45842 1.52533 1.55557 1.70884 1.95312 2.19426 2.76163 2.87805 3.19994 3.53726 3.71965 3.75862 3.84915 3.90155 4.07155 4.08351 4.16858 4.21621 4.30687 4.49198 4.50309 4.61475 4.75577 4.75869 4.80619 4.82854 4.90024 4.91159 4.96870 5.04385 5.11328 5.16584 5.30637 5.32084 5.35502 5.54757 5.59156 5.73826 5.77431 6.04552 6.24872 6.48905 6.93101 6.98990 7.80015 8.77453 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027557 B = 0.001987 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.828291 B =14087.810364 C =14402.307069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 C -0.152 4.152 4 C 0.243 3.757 5 N -0.485 5.485 6 C -0.102 4.102 7 C 0.058 3.942 8 O -0.357 6.357 9 C 0.464 3.536 10 O -0.534 6.534 11 C -0.051 4.051 12 C -0.157 4.157 13 C -0.055 4.055 14 C -0.246 4.246 15 C 0.115 3.885 16 O -0.233 6.233 17 C -0.414 4.414 18 H 0.102 0.898 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.019 2.981 22 H -0.256 1.256 23 H -0.272 1.272 24 H -0.258 1.258 25 C -0.208 4.208 26 C -0.053 4.053 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.118 0.882 41 H 0.272 0.728 42 H 0.113 0.887 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.976 -9.381 -22.659 25.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.043 3.957 3 C -0.210 4.210 4 C -0.075 4.075 5 N -0.161 5.161 6 C -0.141 4.141 7 C -0.016 4.016 8 O -0.274 6.274 9 C 0.308 3.692 10 O -0.423 6.423 11 C -0.088 4.088 12 C -0.158 4.158 13 C -0.073 4.073 14 C -0.265 4.265 15 C 0.064 3.936 16 O -0.139 6.139 17 C -0.490 4.490 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.180 1.180 23 H -0.197 1.197 24 H -0.183 1.183 25 C -0.227 4.227 26 C -0.071 4.071 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.160 0.840 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.131 0.869 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.412 -9.562 -23.822 26.234 hybrid contribution -0.954 0.549 0.908 1.427 sum 4.458 -9.013 -22.914 25.023 Atomic orbital electron populations 1.22082 0.90170 1.04099 1.04684 1.18253 0.97657 0.95013 0.84780 1.22078 1.02524 0.91734 1.04690 1.29419 0.91822 0.92223 0.94006 1.81268 1.10666 1.10967 1.13159 1.21495 1.03010 1.00296 0.89291 1.23299 1.00269 0.96638 0.81373 1.86454 1.70044 1.55940 1.14932 1.24213 0.76854 0.82237 0.85872 1.90726 1.36539 1.27005 1.88046 1.20227 1.04649 1.00233 0.83660 1.19207 0.96508 1.00424 0.99618 1.20971 0.94845 0.98095 0.93426 1.21240 1.02376 1.00774 1.02084 1.19989 0.93683 0.91564 0.88316 1.83939 1.40003 1.49900 1.40105 1.21787 0.99324 1.18725 1.09173 0.88093 1.26605 1.03476 0.96144 0.95896 1.70179 1.41194 1.23707 1.20788 0.84647 0.75224 0.78649 0.77690 1.18031 1.19659 1.18251 1.20450 0.95349 1.05021 1.01858 1.20913 0.99702 0.93273 0.93184 0.89149 0.90740 0.91082 0.91044 0.90742 0.89139 0.89125 0.89174 0.90152 0.90069 0.84154 0.84402 0.84005 0.86384 0.91860 0.86933 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.08 71.98 0.58 -0.31 16 2 C 0.05 0.35 0.72 -53.99 -0.04 0.31 16 3 C -0.15 -0.88 8.08 71.98 0.58 -0.30 16 4 C 0.24 3.37 13.86 89.45 1.24 4.61 16 5 N -0.49 -10.03 18.54 20.01 0.37 -9.66 16 6 C -0.10 -0.81 4.61 30.59 0.14 -0.66 16 7 C 0.06 0.68 4.76 71.98 0.34 1.02 16 8 O -0.36 -5.75 10.22 -51.37 -0.53 -6.27 16 9 C 0.46 9.85 7.95 71.24 0.57 10.41 16 10 O -0.53 -15.97 15.78 21.95 0.35 -15.62 16 11 C -0.05 -0.90 5.94 29.10 0.17 -0.73 16 12 C -0.16 -4.52 4.38 -19.84 -0.09 -4.61 16 13 C -0.06 -1.84 9.69 22.25 0.22 -1.63 16 14 C -0.25 -10.67 9.17 22.39 0.21 -10.47 16 15 C 0.11 5.76 6.65 22.58 0.15 5.91 16 16 O -0.23 -14.16 9.76 -22.72 -0.22 -14.39 16 17 C -0.41 -24.25 9.49 67.92 0.64 -23.61 16 18 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 19 C -0.02 -1.36 5.49 84.84 0.47 -0.89 16 20 N -0.92 -56.73 13.67 21.62 0.30 -56.44 16 21 Si 1.02 42.81 29.55 68.60 2.03 44.84 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 25 C -0.21 -8.84 9.99 22.39 0.22 -8.61 16 26 C -0.05 -1.71 9.69 22.25 0.22 -1.49 16 27 H 0.09 0.45 6.43 -2.39 -0.02 0.43 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 0.43 6.43 -2.39 -0.02 0.42 16 33 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.08 0.93 6.42 -2.38 -0.02 0.92 16 36 H 0.08 0.93 6.42 -2.39 -0.02 0.92 16 37 H 0.14 1.64 8.08 -2.39 -0.02 1.62 16 38 H 0.14 1.67 8.08 -2.39 -0.02 1.65 16 39 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 40 H 0.12 5.22 5.64 -2.91 -0.02 5.20 16 41 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 43 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -80.70 371.43 8.95 -71.76 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 1.03 Total: 16.82 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 5.62 Total: -31.04 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: 0.67 Total: -66.10 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.40 Total: -36.28 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -80.70 8.95 -71.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776384743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.445 kcal (2) G-P(sol) polarization free energy of solvation -80.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds