Wall clock time and date at job start Tue Mar 31 2020 12:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46832 * 2 1 4 4 C 1.47193 * 109.47379 * 239.99882 * 2 1 3 5 5 N 2.60798 * 109.47403 * 239.99826 * 2 1 3 6 6 C 1.52997 * 109.47005 * 119.99425 * 2 1 3 7 7 C 1.52995 * 109.47477 * 300.00480 * 6 2 1 8 8 O 1.45208 * 109.47100 * 179.97438 * 7 6 2 9 9 C 1.34229 * 116.99784 * 180.02562 * 8 7 6 10 10 O 1.20830 * 119.99962 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99937 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47208 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96230 * 269.97915 * 12 11 9 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 60.00398 * 22 20 18 24 24 H 1.48498 * 109.47240 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47319 * 300.00306 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99715 * 12 11 9 27 27 H 1.08996 * 109.47288 * 300.00094 * 1 2 3 28 28 H 1.08993 * 109.47124 * 60.00702 * 1 2 3 29 29 H 1.09003 * 109.46334 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47294 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47249 * 299.99967 * 3 2 1 32 32 H 1.09001 * 109.46876 * 59.99634 * 3 2 1 33 33 H 1.09002 * 109.46891 * 180.02562 * 6 2 1 34 34 H 1.09003 * 109.47336 * 60.00905 * 6 2 1 35 35 H 1.09002 * 109.47268 * 59.99976 * 7 6 2 36 36 H 1.08998 * 109.47265 * 300.00051 * 7 6 2 37 37 H 1.09002 * 109.46571 * 59.99926 * 11 9 8 38 38 H 1.08992 * 109.46782 * 300.00190 * 11 9 8 39 39 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 40 40 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 42 42 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3995 -1.2295 -2.1293 6 6 2.0400 -0.7211 1.2493 7 6 1.5300 0.0001 2.4985 8 8 2.0135 -0.6847 3.6841 9 6 1.6523 -0.1750 4.8721 10 8 0.9547 0.8105 4.9198 11 6 2.1157 -0.8325 6.1465 12 6 1.5759 -0.0711 7.3297 13 6 2.3071 0.9696 7.8736 14 6 1.8154 1.6702 8.9596 15 6 0.5891 1.3369 9.5006 16 6 -0.1447 0.2891 8.9605 17 8 -1.3476 -0.0448 9.4938 18 6 -1.7181 0.5987 10.6192 19 1 -1.1066 1.3984 11.0101 20 6 -2.8843 0.2337 11.2745 21 7 -3.6289 -0.7407 10.7985 22 14 -3.3972 1.1249 12.8340 23 1 -3.5877 2.5679 12.5397 24 1 -4.6705 0.5496 13.3369 25 1 -2.3410 0.9653 13.8656 26 6 0.3522 -0.4133 7.8700 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9563 0.8900 33 1 3.1300 -0.7207 1.2495 34 1 1.6768 -1.7489 1.2494 35 1 0.4399 0.0001 2.4985 36 1 1.8932 1.0278 2.4985 37 1 3.2052 -0.8321 6.1800 38 1 1.7515 -1.8593 6.1788 39 1 3.2640 1.2354 7.4491 40 1 2.3888 2.4820 9.3822 41 1 0.2032 1.8878 10.3455 42 1 -4.4445 -0.9962 11.2572 43 1 -0.2178 -1.2264 7.4454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776395825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:32 Heat of formation + Delta-G solvation = -74.971890 kcal Electronic energy + Delta-G solvation = -24882.708361 eV Core-core repulsion = 21086.704521 eV Total energy + Delta-G solvation = -3796.003840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.56032 -39.13679 -38.77546 -36.92381 -36.22492 -35.50376 -32.48893 -32.10552 -30.14678 -29.23292 -27.96174 -27.36620 -25.42819 -25.14676 -22.29092 -21.63329 -21.25934 -20.37050 -17.97808 -17.67591 -17.09545 -17.01936 -16.76299 -15.98741 -15.33280 -15.11811 -15.06471 -14.68850 -14.41798 -14.16933 -14.05072 -13.61871 -13.54780 -13.41672 -12.97576 -12.92786 -12.70103 -12.53766 -12.46798 -12.40702 -12.14622 -11.83805 -11.65602 -11.58344 -11.42927 -11.38451 -11.28068 -10.87668 -10.81532 -10.65946 -10.56651 -10.47119 -10.32654 -9.35930 -8.83781 -8.13387 -7.24764 -6.44242 -4.03467 1.91543 2.26473 2.32966 2.34824 2.36514 2.79319 3.13624 3.14713 3.17309 3.36364 3.96753 4.20293 4.20804 4.35214 4.51114 4.67775 4.69411 4.83868 4.98092 5.08218 5.09642 5.10120 5.15748 5.24328 5.26105 5.38592 5.39599 5.46739 5.53284 5.62376 5.68888 5.72269 5.73071 5.89857 6.14263 6.30573 6.39035 6.63296 6.88242 7.05042 7.11909 7.20882 7.34078 7.41910 7.78329 7.86313 8.00311 9.01249 9.71106 10.73737 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022333 B = 0.002156 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.428712 B =12982.155514 C =13620.357100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.040 3.960 3 C -0.150 4.150 4 C 0.218 3.782 5 N -0.431 5.431 6 C -0.110 4.110 7 C 0.063 3.937 8 O -0.362 6.362 9 C 0.461 3.539 10 O -0.488 6.488 11 C -0.064 4.064 12 C -0.044 4.044 13 C -0.195 4.195 14 C -0.074 4.074 15 C -0.227 4.227 16 C 0.153 3.847 17 O -0.178 6.178 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.172 4.172 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.127 0.873 42 H 0.270 0.730 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.345 2.171 -15.828 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.036 3.964 3 C -0.208 4.208 4 C -0.101 4.101 5 N -0.105 5.105 6 C -0.149 4.149 7 C -0.011 4.011 8 O -0.280 6.280 9 C 0.303 3.697 10 O -0.373 6.373 11 C -0.102 4.102 12 C -0.045 4.045 13 C -0.214 4.214 14 C -0.093 4.093 15 C -0.247 4.247 16 C 0.100 3.900 17 O -0.081 6.081 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.191 4.191 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.080 0.920 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.284 1.383 -17.270 20.676 hybrid contribution -0.473 0.814 1.053 1.412 sum 10.811 2.197 -16.217 19.614 Atomic orbital electron populations 1.22046 0.90962 1.03843 1.04091 1.18151 0.97174 0.94863 0.86213 1.22036 1.02260 0.92493 1.04061 1.28968 0.93314 0.93502 0.94305 1.81242 1.08809 1.09103 1.11386 1.21556 1.02683 1.00397 0.90228 1.23084 1.00041 0.96210 0.81748 1.86468 1.70445 1.56201 1.14912 1.23844 0.77928 0.83041 0.84893 1.90726 1.34139 1.25039 1.87393 1.20266 1.02891 1.00351 0.86658 1.18662 0.94624 0.96551 0.94635 1.20371 1.00881 0.99682 1.00472 1.20689 0.95090 0.98057 0.95439 1.21203 0.97060 1.01644 1.04757 1.19269 0.86127 0.92213 0.92396 1.83976 1.27446 1.58142 1.38570 1.21270 1.08196 1.16712 1.00638 0.89132 1.25280 0.95422 0.96658 0.99151 1.70025 1.13834 1.26776 1.39172 0.85786 0.78327 0.79158 0.80184 1.19512 1.20299 1.19513 1.19968 0.96496 1.03434 0.99244 0.89778 0.91227 0.91188 0.91284 0.91232 0.89836 0.89627 0.89534 0.90343 0.90469 0.87155 0.87012 0.87738 0.87337 0.85525 0.91988 0.86622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 8.08 37.16 0.30 -0.42 16 2 C 0.04 0.21 0.72 -157.30 -0.11 0.10 16 3 C -0.15 -0.65 8.08 37.16 0.30 -0.35 16 4 C 0.22 1.77 13.86 -20.76 -0.29 1.49 16 5 N -0.43 -4.79 18.54 42.15 0.78 -4.01 16 6 C -0.11 -0.66 4.60 -26.74 -0.12 -0.78 16 7 C 0.06 0.51 4.76 37.15 0.18 0.69 16 8 O -0.36 -3.92 10.22 -39.25 -0.40 -4.32 16 9 C 0.46 6.24 7.95 36.01 0.29 6.53 16 10 O -0.49 -8.39 15.78 -18.75 -0.30 -8.68 16 11 C -0.06 -0.81 5.94 -29.03 -0.17 -0.98 16 12 C -0.04 -0.77 4.37 -104.65 -0.46 -1.22 16 13 C -0.20 -3.31 9.70 -39.53 -0.38 -3.70 16 14 C -0.07 -1.36 10.04 -39.61 -0.40 -1.76 16 15 C -0.23 -4.94 9.17 -39.40 -0.36 -5.30 16 16 C 0.15 3.71 6.65 -39.11 -0.26 3.45 16 17 O -0.18 -5.07 9.76 0.05 0.00 -5.07 16 18 C -0.39 -10.92 9.49 30.89 0.29 -10.62 16 19 H 0.09 2.33 5.21 -52.49 -0.27 2.05 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.21 13.67 55.48 0.76 -24.45 16 22 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 C -0.17 -3.60 9.65 -39.39 -0.38 -3.98 16 27 H 0.08 0.38 6.43 -51.93 -0.33 0.04 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.33 6.43 -51.93 -0.33 0.00 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.64 6.42 -51.93 -0.33 0.31 16 36 H 0.08 0.59 6.42 -51.93 -0.33 0.25 16 37 H 0.11 1.05 8.09 -51.93 -0.42 0.63 16 38 H 0.11 1.20 8.08 -51.93 -0.42 0.78 16 39 H 0.10 1.47 8.06 -52.49 -0.42 1.04 16 40 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -34.28 371.43 -5.94 -40.22 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.68 Total: 1.20 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -1.68 Total: -15.88 kcal Atomic # 7 Polarization: -30.00 SS G_CDS: 1.54 Total: -28.46 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.70 Total: -18.07 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.28 -5.94 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776395825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.748 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds