Wall clock time and date at job start Tue Mar 31 2020 12:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46832 * 2 1 4 4 C 1.47193 * 109.47379 * 239.99882 * 2 1 3 5 5 N 2.60798 * 109.47403 * 239.99826 * 2 1 3 6 6 C 1.52997 * 109.47005 * 119.99425 * 2 1 3 7 7 C 1.52995 * 109.47477 * 300.00480 * 6 2 1 8 8 O 1.45208 * 109.47100 * 179.97438 * 7 6 2 9 9 C 1.34229 * 116.99784 * 180.02562 * 8 7 6 10 10 O 1.20830 * 119.99962 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99937 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47208 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96230 * 269.97915 * 12 11 9 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 60.00398 * 22 20 18 24 24 H 1.48498 * 109.47240 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47319 * 300.00306 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99715 * 12 11 9 27 27 H 1.08996 * 109.47288 * 300.00094 * 1 2 3 28 28 H 1.08993 * 109.47124 * 60.00702 * 1 2 3 29 29 H 1.09003 * 109.46334 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47294 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47249 * 299.99967 * 3 2 1 32 32 H 1.09001 * 109.46876 * 59.99634 * 3 2 1 33 33 H 1.09002 * 109.46891 * 180.02562 * 6 2 1 34 34 H 1.09003 * 109.47336 * 60.00905 * 6 2 1 35 35 H 1.09002 * 109.47268 * 59.99976 * 7 6 2 36 36 H 1.08998 * 109.47265 * 300.00051 * 7 6 2 37 37 H 1.09002 * 109.46571 * 59.99926 * 11 9 8 38 38 H 1.08992 * 109.46782 * 300.00190 * 11 9 8 39 39 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 40 40 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 42 42 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3995 -1.2295 -2.1293 6 6 2.0400 -0.7211 1.2493 7 6 1.5300 0.0001 2.4985 8 8 2.0135 -0.6847 3.6841 9 6 1.6523 -0.1750 4.8721 10 8 0.9547 0.8105 4.9198 11 6 2.1157 -0.8325 6.1465 12 6 1.5759 -0.0711 7.3297 13 6 2.3071 0.9696 7.8736 14 6 1.8154 1.6702 8.9596 15 6 0.5891 1.3369 9.5006 16 6 -0.1447 0.2891 8.9605 17 8 -1.3476 -0.0448 9.4938 18 6 -1.7181 0.5987 10.6192 19 1 -1.1066 1.3984 11.0101 20 6 -2.8843 0.2337 11.2745 21 7 -3.6289 -0.7407 10.7985 22 14 -3.3972 1.1249 12.8340 23 1 -3.5877 2.5679 12.5397 24 1 -4.6705 0.5496 13.3369 25 1 -2.3410 0.9653 13.8656 26 6 0.3522 -0.4133 7.8700 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9563 0.8900 33 1 3.1300 -0.7207 1.2495 34 1 1.6768 -1.7489 1.2494 35 1 0.4399 0.0001 2.4985 36 1 1.8932 1.0278 2.4985 37 1 3.2052 -0.8321 6.1800 38 1 1.7515 -1.8593 6.1788 39 1 3.2640 1.2354 7.4491 40 1 2.3888 2.4820 9.3822 41 1 0.2032 1.8878 10.3455 42 1 -4.4445 -0.9962 11.2572 43 1 -0.2178 -1.2264 7.4454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776395825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:31 Heat of formation + Delta-G solvation = -94.747021 kcal Electronic energy + Delta-G solvation = -24883.565875 eV Core-core repulsion = 21086.704521 eV Total energy + Delta-G solvation = -3796.861354 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58788 -40.65387 -39.52965 -38.38184 -37.38412 -36.23746 -34.33104 -33.56929 -31.02743 -30.64832 -28.64478 -28.32906 -27.25377 -25.88308 -23.51711 -23.12247 -22.10063 -21.64873 -19.47226 -18.83651 -18.75524 -17.76847 -17.66152 -17.00514 -16.70100 -16.37189 -16.09462 -15.78042 -15.65138 -15.46264 -15.17273 -14.86781 -14.70545 -14.34461 -14.11155 -14.01250 -13.73477 -13.65089 -13.50806 -13.07864 -13.00533 -12.93027 -12.82232 -12.56705 -12.46671 -12.41113 -12.21251 -12.18437 -12.11645 -11.96144 -11.89561 -11.43450 -11.28427 -11.18513 -10.77715 -9.66021 -8.96775 -8.44831 -6.13181 0.46971 0.77187 1.29954 1.36056 1.46131 1.52317 1.52941 1.70096 1.91386 2.19520 2.75299 2.87742 3.19606 3.44295 3.68454 3.74712 3.81084 3.88771 4.04430 4.12395 4.15324 4.26577 4.34120 4.43541 4.46928 4.58935 4.67798 4.75224 4.76623 4.79262 4.89180 4.89799 4.95801 5.02550 5.08728 5.14766 5.29567 5.31577 5.34946 5.50166 5.66038 5.73745 5.76466 6.04618 6.24958 6.48104 6.85683 6.99775 7.81164 8.78266 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022333 B = 0.002156 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.428712 B =12982.155514 C =13620.357100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 C -0.151 4.151 4 C 0.243 3.757 5 N -0.485 5.485 6 C -0.103 4.103 7 C 0.057 3.943 8 O -0.355 6.355 9 C 0.468 3.532 10 O -0.532 6.532 11 C -0.064 4.064 12 C -0.036 4.036 13 C -0.176 4.176 14 C -0.074 4.074 15 C -0.243 4.243 16 C 0.110 3.890 17 O -0.234 6.234 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.258 1.258 24 H -0.272 1.272 25 H -0.256 1.256 26 C -0.189 4.189 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.118 0.882 42 H 0.272 0.728 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.187 3.452 -16.310 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 C -0.209 4.209 4 C -0.074 4.074 5 N -0.160 5.160 6 C -0.141 4.141 7 C -0.016 4.016 8 O -0.272 6.272 9 C 0.312 3.688 10 O -0.421 6.421 11 C -0.101 4.101 12 C -0.036 4.036 13 C -0.194 4.194 14 C -0.092 4.092 15 C -0.262 4.262 16 C 0.060 3.940 17 O -0.140 6.140 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.183 1.183 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.208 4.208 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.172 0.828 38 H 0.149 0.851 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.135 0.865 42 H 0.081 0.919 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.196 2.662 -17.794 22.918 hybrid contribution -1.062 0.433 0.947 1.488 sum 13.134 3.096 -16.847 21.585 Atomic orbital electron populations 1.22086 0.90379 1.04001 1.04687 1.18242 0.97497 0.95203 0.84745 1.22077 1.02616 0.91496 1.04734 1.29392 0.91829 0.92226 0.93991 1.81269 1.10676 1.10898 1.13140 1.21501 1.03150 1.00207 0.89259 1.23334 1.00181 0.96852 0.81256 1.86444 1.69907 1.55995 1.14848 1.23896 0.76887 0.82172 0.85812 1.90728 1.36189 1.27116 1.88048 1.20388 1.05329 1.00273 0.84129 1.19141 0.92734 0.96343 0.95384 1.21020 1.01985 0.97662 0.98727 1.21147 0.93714 0.98845 0.95459 1.21331 0.98569 1.01289 1.05026 1.19884 0.86041 0.94120 0.93961 1.83936 1.30146 1.60153 1.39813 1.21772 1.08866 1.17208 1.01094 0.88173 1.26590 0.95118 0.97564 1.02889 1.70177 1.14843 1.29418 1.41514 0.84653 0.78171 0.78043 0.75380 1.18269 1.19661 1.18073 1.20251 0.98198 1.03520 0.98865 0.89277 0.90586 0.91325 0.90826 0.90676 0.89107 0.88789 0.89442 0.90511 0.89540 0.82764 0.85125 0.83061 0.83580 0.86452 0.91888 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.08 71.98 0.58 -0.63 16 2 C 0.05 0.41 0.72 -53.99 -0.04 0.37 16 3 C -0.15 -0.95 8.08 71.98 0.58 -0.37 16 4 C 0.24 3.65 13.86 89.44 1.24 4.88 16 5 N -0.48 -10.50 18.54 20.00 0.37 -10.13 16 6 C -0.10 -0.97 4.60 30.59 0.14 -0.83 16 7 C 0.06 0.78 4.76 71.98 0.34 1.13 16 8 O -0.35 -6.56 10.22 -51.40 -0.53 -7.09 16 9 C 0.47 11.28 7.95 71.24 0.57 11.85 16 10 O -0.53 -17.29 15.78 21.95 0.35 -16.95 16 11 C -0.06 -1.36 5.94 29.10 0.17 -1.19 16 12 C -0.04 -1.14 4.37 -19.88 -0.09 -1.23 16 13 C -0.18 -5.21 9.70 22.30 0.22 -5.00 16 14 C -0.07 -2.49 10.04 22.25 0.22 -2.26 16 15 C -0.24 -10.64 9.17 22.39 0.21 -10.44 16 16 C 0.11 5.54 6.65 22.58 0.15 5.69 16 17 O -0.23 -14.23 9.76 -22.74 -0.22 -14.46 16 18 C -0.41 -24.29 9.49 67.92 0.64 -23.65 16 19 H 0.10 5.39 5.21 -2.91 -0.02 5.38 16 20 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 21 N -0.92 -56.88 13.67 21.61 0.30 -56.58 16 22 Si 1.02 43.01 29.55 68.60 2.03 45.03 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 26 C -0.19 -8.02 9.65 22.39 0.22 -7.80 16 27 H 0.09 0.65 6.43 -2.39 -0.02 0.63 16 28 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.47 6.43 -2.39 -0.02 0.46 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 1.11 6.42 -2.39 -0.02 1.10 16 36 H 0.09 1.06 6.42 -2.39 -0.02 1.05 16 37 H 0.15 1.97 8.09 -2.39 -0.02 1.95 16 38 H 0.13 2.35 8.08 -2.39 -0.02 2.33 16 39 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 40 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 41 H 0.12 5.22 5.64 -2.91 -0.02 5.21 16 42 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -81.11 371.43 8.94 -72.16 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 1.03 Total: 18.39 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: 5.62 Total: -30.39 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: 0.67 Total: -66.71 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.40 Total: -38.49 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -81.11 8.94 -72.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776395825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.583 kcal (2) G-P(sol) polarization free energy of solvation -81.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds