Wall clock time and date at job start Tue Mar 31 2020 12:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99769 * 2 1 4 4 C 1.53001 * 109.46583 * 124.99760 * 3 2 1 5 5 H 1.08994 * 109.47746 * 305.00381 * 4 3 2 6 6 C 1.50702 * 109.46880 * 65.00833 * 4 3 2 7 7 O 1.20826 * 120.00303 * 119.99561 * 6 4 3 8 8 O 1.34228 * 119.99603 * 299.99284 * 6 4 3 9 9 C 1.45206 * 117.00001 * 180.02562 * 8 6 4 10 10 C 1.50703 * 109.47147 * 180.02562 * 9 8 6 11 11 O 1.21279 * 119.99926 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99583 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46860 * 180.02562 * 13 12 10 15 15 H 1.07995 * 119.99838 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99810 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00437 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99864 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46819 * 60.00115 * 18 16 14 20 20 H 1.48494 * 109.47196 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47285 * 300.00179 * 18 16 14 22 22 C 1.50704 * 109.46954 * 184.99721 * 4 3 2 23 23 C 1.38234 * 120.00458 * 299.73281 * 22 4 3 24 24 C 1.38229 * 120.00005 * 179.78341 * 23 22 4 25 25 C 1.38237 * 120.00027 * 0.44188 * 24 23 22 26 26 C 1.38238 * 120.00133 * 359.81516 * 25 24 23 27 27 C 1.38234 * 119.99640 * 120.00321 * 22 4 3 28 28 H 1.08001 * 120.00270 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99685 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00059 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.47197 * 5.00733 * 3 2 1 32 32 H 1.08996 * 109.47474 * 245.00016 * 3 2 1 33 33 H 1.09001 * 109.47157 * 299.99890 * 9 8 6 34 34 H 1.09004 * 109.47122 * 60.00023 * 9 8 6 35 35 H 0.96998 * 120.00166 * 0.02562 * 12 10 9 36 36 H 1.08988 * 109.47941 * 300.00311 * 13 12 10 37 37 H 1.09001 * 109.47199 * 60.00916 * 13 12 10 38 38 H 0.96999 * 120.00397 * 180.02562 * 17 16 14 39 39 H 1.08000 * 119.99616 * 0.02562 * 23 22 4 40 40 H 1.08004 * 120.00171 * 180.27738 * 24 23 22 41 41 H 1.08006 * 120.00068 * 179.82771 * 25 24 23 42 42 H 1.07991 * 120.00091 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.00127 * 359.97438 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3330 1.1817 5 1 2.4882 1.1468 2.1061 6 6 4.0839 0.2672 0.9949 7 8 5.2508 0.5732 0.9276 8 8 3.7217 -1.0220 0.9033 9 6 4.7852 -1.9944 0.7247 10 6 4.1926 -3.3776 0.6424 11 8 2.9921 -3.5289 0.7257 12 7 4.9966 -4.4463 0.4754 13 6 4.4205 -5.7909 0.3960 14 6 5.5243 -6.8001 0.2105 15 1 6.5520 -6.4726 0.1575 16 6 5.2219 -8.1414 0.1085 17 7 3.9704 -8.5403 0.1736 18 14 6.5901 -9.3924 -0.1207 19 1 7.5236 -9.3217 1.0320 20 1 6.0062 -10.7554 -0.2013 21 1 7.3282 -9.0947 -1.3744 22 6 3.6990 2.6840 1.2542 23 6 4.4586 3.1387 0.1926 24 6 5.0640 4.3797 0.2574 25 6 4.9173 5.1621 1.3876 26 6 4.1620 4.7051 2.4514 27 6 3.5531 3.4660 2.3848 28 1 -0.5401 0.9353 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0897 32 1 2.6213 1.4027 -0.9313 33 1 5.3263 -1.7761 -0.1960 34 1 5.4710 -1.9422 1.5703 35 1 5.9566 -4.3252 0.4084 36 1 3.8798 -6.0096 1.3167 37 1 3.7344 -5.8429 -0.4494 38 1 3.7577 -9.4840 0.1022 39 1 4.5758 2.5260 -0.6890 40 1 5.6538 4.7370 -0.5738 41 1 5.3926 6.1306 1.4394 42 1 4.0478 5.3162 3.3345 43 1 2.9628 3.1090 3.2158 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778416263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:23 Heat of formation + Delta-G solvation = -84.738221 kcal Electronic energy + Delta-G solvation = -25400.616797 eV Core-core repulsion = 21604.189457 eV Total energy + Delta-G solvation = -3796.427340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.01628 -39.44525 -38.62820 -36.40111 -35.97523 -34.26574 -32.66548 -32.42570 -31.15738 -29.63304 -28.71335 -26.70678 -24.97658 -23.01978 -22.81873 -22.22124 -20.46523 -20.03355 -19.70994 -17.74277 -17.53743 -17.08646 -16.82372 -16.21693 -15.62902 -15.45812 -15.29200 -14.99730 -14.78345 -14.50242 -14.27165 -13.84529 -13.62287 -13.31264 -13.14490 -12.99348 -12.85174 -12.61816 -12.23993 -12.01077 -11.85029 -11.77764 -11.39192 -11.25528 -11.05329 -10.93316 -10.89418 -10.63897 -10.47689 -10.35824 -9.47271 -9.42348 -9.20184 -9.13538 -8.98106 -8.79390 -8.00835 -6.20932 -4.28528 1.01506 1.17886 2.04695 2.31666 2.45932 3.15667 3.23220 3.28213 3.29564 3.55202 3.96538 4.15568 4.31642 4.48535 4.70096 4.74722 4.78671 4.86583 4.90684 5.03300 5.13901 5.15070 5.22148 5.24152 5.27489 5.32354 5.33784 5.54832 5.66207 5.69101 5.78699 6.04664 6.18936 6.26110 6.30329 6.32335 6.72500 6.77369 6.83132 7.20465 7.28605 7.43899 7.57111 7.66870 7.90439 8.47921 8.69107 8.94115 9.37857 10.89087 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.002363 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.536090 B =11844.435784 C =12720.688579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.163 4.163 3 C -0.079 4.079 4 C -0.034 4.034 5 H 0.119 0.881 6 C 0.465 3.535 7 O -0.501 6.501 8 O -0.322 6.322 9 C 0.045 3.955 10 C 0.500 3.500 11 O -0.534 6.534 12 N -0.707 5.707 13 C 0.252 3.748 14 C -0.546 4.546 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.077 4.077 23 C -0.084 4.084 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.106 4.106 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.136 0.864 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.393 0.607 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.267 0.733 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 26.435 1.562 26.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.181 4.181 3 C -0.116 4.116 4 C -0.053 4.053 5 H 0.137 0.863 6 C 0.307 3.693 7 O -0.388 6.388 8 O -0.237 6.237 9 C -0.033 4.033 10 C 0.283 3.717 11 O -0.411 6.411 12 N -0.357 5.357 13 C 0.132 3.868 14 C -0.584 4.584 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.077 4.077 23 C -0.102 4.102 24 C -0.139 4.139 25 C -0.135 4.135 26 C -0.141 4.141 27 C -0.124 4.124 28 H 0.109 0.891 29 H 0.119 0.881 30 H 0.154 0.846 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.226 0.774 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.578 26.170 1.587 26.266 hybrid contribution 1.425 -0.791 -0.111 1.634 sum -0.153 25.379 1.476 25.423 Atomic orbital electron populations 1.23842 0.95855 1.01661 1.01249 1.23339 0.96453 0.98810 0.99484 1.20755 0.97236 0.97320 0.96334 1.20001 0.93808 0.88453 1.03035 0.86331 1.23560 0.89694 0.83133 0.72885 1.90686 1.20053 1.82666 1.45410 1.86614 1.38710 1.16064 1.82329 1.22899 0.89211 0.87038 1.04134 1.19879 0.87721 0.85303 0.78820 1.90703 1.14505 1.86084 1.49830 1.46370 1.09942 1.08017 1.71348 1.19165 0.94641 0.75111 0.97907 1.21168 0.93050 0.91532 1.52692 0.91837 1.24950 0.95921 0.98426 0.94671 1.69959 1.17338 1.16507 1.48368 0.86448 0.81499 0.80003 0.78814 1.20032 1.21037 1.20027 1.19289 0.99120 0.94094 0.95188 1.20951 0.95588 0.95510 0.98168 1.21126 0.99916 0.94533 0.98374 1.21182 0.98742 0.99798 0.93771 1.21090 0.98076 0.96148 0.98817 1.21026 0.99802 0.94655 0.96946 0.89111 0.88113 0.84606 0.89722 0.90360 0.88579 0.88578 0.77446 0.95273 0.95258 0.92303 0.86208 0.85973 0.86119 0.85938 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 14.32 29.01 0.42 -1.62 16 2 C -0.16 -1.92 8.90 -36.03 -0.32 -2.24 16 3 C -0.08 -0.75 4.87 -27.88 -0.14 -0.89 16 4 C -0.03 -0.35 2.49 -92.92 -0.23 -0.58 16 5 H 0.12 1.08 7.88 -51.93 -0.41 0.67 16 6 C 0.47 6.17 7.10 36.01 0.26 6.43 16 7 O -0.50 -7.51 14.84 -18.75 -0.28 -7.79 16 8 O -0.32 -4.83 7.06 -45.90 -0.32 -5.16 16 9 C 0.04 0.66 5.94 36.01 0.21 0.88 16 10 C 0.50 9.76 7.91 -10.98 -0.09 9.67 16 11 O -0.53 -12.57 16.50 -14.10 -0.23 -12.80 16 12 N -0.71 -14.41 5.55 -61.47 -0.34 -14.75 16 13 C 0.25 6.52 5.43 -5.19 -0.03 6.49 16 14 C -0.55 -14.54 9.28 -34.44 -0.32 -14.86 16 15 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -25.70 13.29 55.43 0.74 -24.96 16 18 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 C -0.08 -0.77 4.40 -104.62 -0.46 -1.23 16 23 C -0.08 -0.85 7.98 -39.59 -0.32 -1.17 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 25 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 26 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 27 C -0.11 -0.94 9.67 -39.58 -0.38 -1.33 16 28 H 0.09 0.79 7.84 -52.49 -0.41 0.38 16 29 H 0.10 1.14 8.06 -52.48 -0.42 0.71 16 30 H 0.14 2.01 5.88 -52.49 -0.31 1.71 16 31 H 0.08 0.66 7.79 -51.93 -0.40 0.26 16 32 H 0.08 0.72 7.58 -51.93 -0.39 0.33 16 33 H 0.10 1.25 8.13 -51.93 -0.42 0.82 16 34 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 35 H 0.39 6.75 8.32 -40.82 -0.34 6.41 16 36 H 0.03 0.83 8.14 -51.94 -0.42 0.41 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.12 1.20 7.58 -52.49 -0.40 0.80 16 40 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.87 7.95 -52.48 -0.42 0.45 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -32.89 373.49 -8.52 -41.41 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.00 Total: 5.84 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -2.69 Total: -3.00 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.40 Total: -39.71 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.83 Total: -25.75 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.89 -8.52 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778416263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.327 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds