Wall clock time and date at job start Tue Mar 31 2020 12:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99769 * 2 1 4 4 C 1.53001 * 109.46583 * 124.99760 * 3 2 1 5 5 H 1.08994 * 109.47746 * 305.00381 * 4 3 2 6 6 C 1.50702 * 109.46880 * 65.00833 * 4 3 2 7 7 O 1.20826 * 120.00303 * 119.99561 * 6 4 3 8 8 O 1.34228 * 119.99603 * 299.99284 * 6 4 3 9 9 C 1.45206 * 117.00001 * 180.02562 * 8 6 4 10 10 C 1.50703 * 109.47147 * 180.02562 * 9 8 6 11 11 O 1.21279 * 119.99926 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99583 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46860 * 180.02562 * 13 12 10 15 15 H 1.07995 * 119.99838 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99810 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00437 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99864 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46819 * 60.00115 * 18 16 14 20 20 H 1.48494 * 109.47196 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47285 * 300.00179 * 18 16 14 22 22 C 1.50704 * 109.46954 * 184.99721 * 4 3 2 23 23 C 1.38234 * 120.00458 * 299.73281 * 22 4 3 24 24 C 1.38229 * 120.00005 * 179.78341 * 23 22 4 25 25 C 1.38237 * 120.00027 * 0.44188 * 24 23 22 26 26 C 1.38238 * 120.00133 * 359.81516 * 25 24 23 27 27 C 1.38234 * 119.99640 * 120.00321 * 22 4 3 28 28 H 1.08001 * 120.00270 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99685 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00059 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.47197 * 5.00733 * 3 2 1 32 32 H 1.08996 * 109.47474 * 245.00016 * 3 2 1 33 33 H 1.09001 * 109.47157 * 299.99890 * 9 8 6 34 34 H 1.09004 * 109.47122 * 60.00023 * 9 8 6 35 35 H 0.96998 * 120.00166 * 0.02562 * 12 10 9 36 36 H 1.08988 * 109.47941 * 300.00311 * 13 12 10 37 37 H 1.09001 * 109.47199 * 60.00916 * 13 12 10 38 38 H 0.96999 * 120.00397 * 180.02562 * 17 16 14 39 39 H 1.08000 * 119.99616 * 0.02562 * 23 22 4 40 40 H 1.08004 * 120.00171 * 180.27738 * 24 23 22 41 41 H 1.08006 * 120.00068 * 179.82771 * 25 24 23 42 42 H 1.07991 * 120.00091 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.00127 * 359.97438 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3330 1.1817 5 1 2.4882 1.1468 2.1061 6 6 4.0839 0.2672 0.9949 7 8 5.2508 0.5732 0.9276 8 8 3.7217 -1.0220 0.9033 9 6 4.7852 -1.9944 0.7247 10 6 4.1926 -3.3776 0.6424 11 8 2.9921 -3.5289 0.7257 12 7 4.9966 -4.4463 0.4754 13 6 4.4205 -5.7909 0.3960 14 6 5.5243 -6.8001 0.2105 15 1 6.5520 -6.4726 0.1575 16 6 5.2219 -8.1414 0.1085 17 7 3.9704 -8.5403 0.1736 18 14 6.5901 -9.3924 -0.1207 19 1 7.5236 -9.3217 1.0320 20 1 6.0062 -10.7554 -0.2013 21 1 7.3282 -9.0947 -1.3744 22 6 3.6990 2.6840 1.2542 23 6 4.4586 3.1387 0.1926 24 6 5.0640 4.3797 0.2574 25 6 4.9173 5.1621 1.3876 26 6 4.1620 4.7051 2.4514 27 6 3.5531 3.4660 2.3848 28 1 -0.5401 0.9353 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0897 32 1 2.6213 1.4027 -0.9313 33 1 5.3263 -1.7761 -0.1960 34 1 5.4710 -1.9422 1.5703 35 1 5.9566 -4.3252 0.4084 36 1 3.8798 -6.0096 1.3167 37 1 3.7344 -5.8429 -0.4494 38 1 3.7577 -9.4840 0.1022 39 1 4.5758 2.5260 -0.6890 40 1 5.6538 4.7370 -0.5738 41 1 5.3926 6.1306 1.4394 42 1 4.0478 5.3162 3.3345 43 1 2.9628 3.1090 3.2158 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778416263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:22 Heat of formation + Delta-G solvation = -103.385560 kcal Electronic energy + Delta-G solvation = -25401.425406 eV Core-core repulsion = 21604.189457 eV Total energy + Delta-G solvation = -3797.235949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.05289 -40.59914 -39.87402 -37.55858 -36.81305 -36.18349 -34.42169 -33.45765 -31.78120 -30.96884 -29.75298 -28.44176 -25.86616 -24.68377 -23.56145 -23.28266 -21.66182 -21.32146 -20.71738 -19.16284 -18.79997 -18.04768 -17.92324 -17.52042 -17.09888 -16.89545 -16.48615 -16.12702 -15.93882 -15.75134 -15.47082 -14.76110 -14.59587 -14.53776 -14.21735 -14.13807 -13.91760 -13.76402 -13.73347 -13.54627 -13.00365 -12.97085 -12.69277 -12.67568 -12.25684 -12.17498 -11.90289 -11.85457 -11.66941 -11.54031 -11.48262 -10.90432 -10.81454 -10.27679 -9.93538 -9.77718 -9.66202 -8.30321 -6.47052 0.33867 0.54002 1.02447 1.27881 1.43533 1.46925 1.47611 1.55248 1.55490 2.33056 2.55166 2.93264 3.04686 3.37554 3.60112 3.72697 3.90892 3.97630 4.03994 4.06555 4.16243 4.19373 4.27139 4.32030 4.46232 4.63989 4.66130 4.80677 4.93114 5.02995 5.07364 5.13593 5.17386 5.21049 5.26450 5.40975 5.57220 5.61977 5.64250 5.64885 5.81180 5.83616 5.95872 6.11859 6.56512 6.61923 6.77854 7.19481 7.34770 8.81450 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.002363 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.536090 B =11844.435784 C =12720.688579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.177 4.177 3 C -0.069 4.069 4 C -0.028 4.028 5 H 0.131 0.869 6 C 0.466 3.534 7 O -0.518 6.518 8 O -0.337 6.337 9 C 0.056 3.944 10 C 0.500 3.500 11 O -0.579 6.579 12 N -0.700 5.700 13 C 0.268 3.732 14 C -0.558 4.558 15 H 0.085 0.915 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.985 3.015 19 H -0.262 1.262 20 H -0.286 1.286 21 H -0.262 1.262 22 C -0.090 4.090 23 C -0.102 4.102 24 C -0.132 4.132 25 C -0.120 4.120 26 C -0.127 4.127 27 C -0.115 4.115 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.412 0.588 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.269 0.731 39 H 0.113 0.887 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 28.504 1.931 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.195 4.195 3 C -0.106 4.106 4 C -0.047 4.047 5 H 0.149 0.851 6 C 0.310 3.690 7 O -0.407 6.407 8 O -0.252 6.252 9 C -0.021 4.021 10 C 0.286 3.714 11 O -0.459 6.459 12 N -0.352 5.352 13 C 0.146 3.854 14 C -0.596 4.596 15 H 0.103 0.897 16 C -0.195 4.195 17 N -0.568 5.568 18 Si 0.808 3.192 19 H -0.187 1.187 20 H -0.211 1.211 21 H -0.187 1.187 22 C -0.090 4.090 23 C -0.120 4.120 24 C -0.150 4.150 25 C -0.138 4.138 26 C -0.145 4.145 27 C -0.132 4.132 28 H 0.137 0.863 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.248 0.752 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.078 0.922 39 H 0.131 0.869 40 H 0.154 0.846 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.139 28.282 1.956 28.350 hybrid contribution 0.842 -1.351 -0.212 1.606 sum 0.981 26.931 1.744 27.006 Atomic orbital electron populations 1.23980 0.95579 1.02440 0.99947 1.23234 0.96845 0.98615 1.00812 1.20705 0.97206 0.96603 0.96076 1.20079 0.93093 0.87645 1.03835 0.85095 1.24182 0.90224 0.82666 0.71936 1.90670 1.20959 1.82674 1.46357 1.86653 1.38957 1.16953 1.82649 1.22741 0.88936 0.84058 1.06379 1.20648 0.86997 0.86859 0.76905 1.90683 1.16725 1.87023 1.51493 1.46052 1.11006 1.06516 1.71589 1.18607 0.94196 0.78121 0.94517 1.21576 0.93922 0.91870 1.52219 0.89691 1.26049 0.98545 1.00920 0.94010 1.70122 1.19992 1.17089 1.49559 0.85209 0.78005 0.76580 0.79448 1.18703 1.21126 1.18681 1.19318 0.99871 0.93957 0.95874 1.21043 0.96500 0.96248 0.98242 1.21380 0.99963 0.94269 0.99353 1.21524 0.98362 1.00591 0.93314 1.21437 0.97385 0.96058 0.99630 1.21297 1.00012 0.94960 0.96966 0.86285 0.89355 0.88068 0.87377 0.90360 0.86136 0.86188 0.75233 0.98996 0.98976 0.92191 0.86935 0.84593 0.83851 0.83639 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.85 14.32 67.78 0.97 -2.88 16 2 C -0.18 -4.19 8.90 25.65 0.23 -3.96 16 3 C -0.07 -1.24 4.87 29.85 0.15 -1.09 16 4 C -0.03 -0.54 2.49 -12.28 -0.03 -0.57 16 5 H 0.13 2.20 7.88 -2.39 -0.02 2.18 16 6 C 0.47 12.10 7.10 71.24 0.51 12.61 16 7 O -0.52 -15.07 14.84 21.96 0.33 -14.74 16 8 O -0.34 -10.12 7.06 -45.04 -0.32 -10.44 16 9 C 0.06 1.62 5.94 71.24 0.42 2.04 16 10 C 0.50 19.97 7.91 87.66 0.69 20.66 16 11 O -0.58 -28.66 16.50 15.77 0.26 -28.40 16 12 N -0.70 -28.98 5.55 -466.79 -2.59 -31.57 16 13 C 0.27 14.47 5.43 85.63 0.46 14.94 16 14 C -0.56 -29.90 9.28 25.60 0.24 -29.66 16 15 H 0.09 4.09 7.60 -2.91 -0.02 4.06 16 16 C 0.00 0.26 5.46 84.65 0.46 0.72 16 17 N -0.93 -55.51 13.29 21.45 0.28 -55.23 16 18 Si 0.98 41.91 29.54 68.60 2.03 43.94 16 19 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 20 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 22 C -0.09 -1.68 4.40 -19.86 -0.09 -1.77 16 23 C -0.10 -1.97 7.98 22.27 0.18 -1.79 16 24 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 25 C -0.12 -1.64 10.05 22.27 0.22 -1.42 16 26 C -0.13 -1.72 10.05 22.27 0.22 -1.49 16 27 C -0.11 -1.78 9.67 22.27 0.22 -1.57 16 28 H 0.12 1.81 7.84 -2.91 -0.02 1.79 16 29 H 0.09 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.10 3.17 5.88 -2.91 -0.02 3.15 16 31 H 0.11 1.45 7.79 -2.38 -0.02 1.43 16 32 H 0.08 1.40 7.58 -2.39 -0.02 1.38 16 33 H 0.12 2.95 8.13 -2.39 -0.02 2.93 16 34 H 0.12 2.96 8.13 -2.38 -0.02 2.94 16 35 H 0.41 13.81 8.32 -92.71 -0.77 13.03 16 36 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.11 2.22 7.58 -2.91 -0.02 2.20 16 40 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 42 H 0.15 1.22 8.06 -2.92 -0.02 1.20 16 43 H 0.14 1.62 7.95 -2.91 -0.02 1.59 16 Total: -1.00 -73.96 373.49 5.31 -68.65 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.24 Total: 24.93 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 5.08 Total: 2.86 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -2.30 Total: -86.80 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: 0.27 Total: -53.57 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -73.96 5.31 -68.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778416263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.735 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds