Wall clock time and date at job start Tue Mar 31 2020 11:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 C 1.53000 * 109.46860 * 125.27738 * 3 2 1 5 5 C 1.53005 * 109.47235 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.46969 * 304.99465 * 5 4 3 7 7 C 1.50694 * 109.47082 * 184.99865 * 5 4 3 8 8 O 1.20827 * 120.00554 * 239.99645 * 7 5 4 9 9 O 1.34237 * 120.00434 * 60.00005 * 7 5 4 10 10 C 1.45196 * 117.00604 * 179.97438 * 9 7 5 11 11 C 1.50691 * 109.47531 * 179.97438 * 10 9 7 12 12 O 1.21303 * 119.99614 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00593 * 180.02562 * 11 10 9 14 14 C 1.37094 * 120.00407 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00217 * 359.97438 * 14 13 11 16 16 C 1.38945 * 120.00131 * 179.97438 * 14 13 11 17 17 N 1.31419 * 119.99951 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00378 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47036 * 59.99431 * 18 16 14 20 20 H 1.48496 * 109.47558 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46772 * 300.00128 * 18 16 14 22 22 C 1.50695 * 109.47278 * 65.00008 * 5 4 3 23 23 C 1.38236 * 120.00307 * 59.72399 * 22 5 4 24 24 C 1.38230 * 120.00032 * 179.81006 * 23 22 5 25 25 C 1.38231 * 120.00292 * 0.40384 * 24 23 22 26 26 C 1.38241 * 119.99715 * 359.85411 * 25 24 23 27 27 C 1.38229 * 120.00174 * 359.95439 * 26 25 24 28 28 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 29 29 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 30 30 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 31 31 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 32 32 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 33 33 H 1.09007 * 109.47145 * 300.00092 * 4 3 2 34 34 H 1.09001 * 109.47134 * 59.99947 * 4 3 2 35 35 H 1.09002 * 109.46975 * 299.99996 * 10 9 7 36 36 H 1.09003 * 109.46490 * 59.99777 * 10 9 7 37 37 H 0.97000 * 119.99569 * 359.97438 * 13 11 10 38 38 H 0.97001 * 119.99982 * 179.97438 * 17 16 14 39 39 H 1.08004 * 119.99443 * 0.02562 * 23 22 5 40 40 H 1.07998 * 119.99896 * 180.23195 * 24 23 22 41 41 H 1.07997 * 120.00541 * 179.83495 * 25 24 23 42 42 H 1.08000 * 119.99714 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.00381 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0399 1.3302 1.1776 5 6 3.8044 2.6555 1.1781 6 1 4.2865 2.7972 0.2108 7 6 4.8510 2.6313 2.2620 8 8 4.8207 3.4505 3.1497 9 8 5.8172 1.6996 2.2416 10 6 6.7918 1.7368 3.3172 11 6 7.7904 0.6240 3.1290 12 8 7.6906 -0.1265 2.1812 13 7 8.7942 0.4624 4.0137 14 6 9.7029 -0.5496 3.8422 15 1 9.6142 -1.2178 2.9984 16 6 10.7381 -0.7158 4.7540 17 7 10.8464 0.0976 5.7805 18 14 11.9767 -2.0944 4.5200 19 1 12.6697 -1.9215 3.2180 20 1 12.9737 -2.0561 5.6198 21 1 11.2716 -3.4013 4.5357 22 6 2.8446 3.7892 1.4319 23 6 2.1082 3.8227 2.6013 24 6 1.2306 4.8646 2.8359 25 6 1.0832 5.8687 1.8974 26 6 1.8156 5.8324 0.7255 27 6 2.6961 4.7926 0.4927 28 1 -0.5401 0.9353 0.0045 29 1 -0.5400 -0.9353 -0.0045 30 1 1.8500 -0.9353 -0.0046 31 1 2.6173 1.4049 -0.9334 32 1 1.3589 2.1314 0.0945 33 1 2.4859 1.2304 2.1111 34 1 3.7444 0.5039 1.0831 35 1 7.3096 2.6959 3.3052 36 1 6.2831 1.6103 4.2729 37 1 8.8741 1.0628 4.7714 38 1 11.5688 -0.0187 6.4173 39 1 2.2212 3.0365 3.3333 40 1 0.6581 4.8927 3.7512 41 1 0.3956 6.6814 2.0794 42 1 1.7001 6.6167 -0.0079 43 1 3.2681 4.7640 -0.4230 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778555410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:04 Heat of formation + Delta-G solvation = -88.946018 kcal Electronic energy + Delta-G solvation = -25507.724475 eV Core-core repulsion = 21711.114672 eV Total energy + Delta-G solvation = -3796.609803 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.77383 -39.26716 -38.08444 -36.42910 -36.03684 -34.00020 -33.64020 -31.38175 -31.05551 -30.11521 -28.69439 -27.04449 -24.60494 -23.22235 -22.51267 -22.23638 -20.08827 -19.90553 -19.57253 -18.07629 -17.48598 -17.14573 -16.42314 -16.20287 -15.75430 -15.48922 -15.15815 -14.96796 -14.57062 -14.23287 -14.06645 -13.89896 -13.62571 -13.50243 -12.98439 -12.91976 -12.81025 -12.36681 -12.20991 -12.00960 -11.76345 -11.62179 -11.40099 -11.26749 -11.11607 -10.93446 -10.86560 -10.49362 -10.39044 -10.33101 -10.24391 -9.59696 -9.49617 -9.02526 -8.89256 -8.51807 -8.08468 -6.50059 -3.92227 1.14893 1.29243 2.09086 2.33428 2.73942 3.15200 3.22544 3.27214 3.68460 3.73836 4.11230 4.29104 4.48273 4.66874 4.74375 4.83817 4.90328 4.96608 4.97550 5.11776 5.14363 5.16253 5.25984 5.30603 5.36044 5.47378 5.56803 5.64042 5.69945 5.72645 5.79062 5.89541 5.90737 6.05397 6.08413 6.30568 6.37590 6.44351 6.47618 6.60554 6.63904 6.85105 7.47364 7.85597 7.96788 8.48467 9.06803 9.39221 9.89195 10.67122 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.002647 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.145685 B =10577.282100 C =11717.257739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C -0.091 4.091 4 C -0.107 4.107 5 C -0.038 4.038 6 H 0.117 0.883 7 C 0.461 3.539 8 O -0.504 6.504 9 O -0.323 6.323 10 C 0.060 3.940 11 C 0.439 3.561 12 O -0.576 6.576 13 N -0.553 5.553 14 C -0.303 4.303 15 H 0.106 0.894 16 C 0.025 3.975 17 N -0.898 5.898 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C -0.070 4.070 23 C -0.084 4.084 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.108 4.108 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.058 8.692 -8.351 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.167 4.167 3 C -0.129 4.129 4 C -0.145 4.145 5 C -0.057 4.057 6 H 0.135 0.865 7 C 0.303 3.697 8 O -0.392 6.392 9 O -0.238 6.238 10 C -0.017 4.017 11 C 0.223 3.777 12 O -0.460 6.460 13 N -0.190 5.190 14 C -0.432 4.432 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.538 5.538 18 Si 0.761 3.239 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.070 4.070 23 C -0.102 4.102 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.126 4.126 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.228 0.772 38 H 0.084 0.916 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.946 8.418 -8.539 23.272 hybrid contribution 0.825 -0.108 0.696 1.085 sum -19.121 8.310 -7.843 22.275 Atomic orbital electron populations 1.23829 0.95987 1.01662 1.02079 1.22989 0.96014 0.98646 0.99014 1.20764 0.98062 0.95650 0.98379 1.21597 0.98272 0.94973 0.99612 1.20003 0.92012 0.95965 0.97741 0.86481 1.23507 0.81563 0.78517 0.86113 1.90673 1.73823 1.38347 1.36376 1.86541 1.36775 1.51270 1.49164 1.22745 0.89535 1.00497 0.88949 1.19318 0.84449 0.87694 0.86209 1.90561 1.75702 1.47469 1.32271 1.41700 1.23724 1.29644 1.23927 1.19673 1.04612 1.08086 1.10823 0.87666 1.25312 0.98501 0.98690 0.95233 1.69610 1.33292 1.37621 1.13292 0.85860 0.79489 0.80599 0.77955 1.19747 1.20865 1.19742 1.19289 0.97037 0.95245 0.95421 1.20944 0.94844 0.98339 0.96070 1.21107 0.98922 0.94581 0.99307 1.21147 0.99641 0.98634 0.94302 1.21066 0.97083 0.98352 0.97660 1.21011 0.98784 0.93824 0.99024 0.88759 0.88645 0.87099 0.90527 0.91128 0.90991 0.89165 0.89612 0.89622 0.77168 0.91570 0.86271 0.86097 0.86252 0.86074 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 14.32 29.02 0.42 -1.24 16 2 C -0.15 -1.34 9.52 -36.02 -0.34 -1.69 16 3 C -0.09 -0.81 5.47 -27.88 -0.15 -0.97 16 4 C -0.11 -1.14 4.52 -26.73 -0.12 -1.26 16 5 C -0.04 -0.45 2.48 -92.93 -0.23 -0.68 16 6 H 0.12 1.18 7.88 -51.93 -0.41 0.77 16 7 C 0.46 7.24 7.13 36.00 0.26 7.50 16 8 O -0.50 -8.86 14.88 -18.75 -0.28 -9.13 16 9 O -0.32 -5.95 9.56 -45.92 -0.44 -6.38 16 10 C 0.06 1.15 5.94 36.00 0.21 1.37 16 11 C 0.44 10.56 7.86 -10.99 -0.09 10.48 16 12 O -0.58 -15.90 16.08 -14.12 -0.23 -16.13 16 13 N -0.55 -14.00 5.29 -10.97 -0.06 -14.06 16 14 C -0.30 -8.35 9.68 -14.94 -0.14 -8.50 16 15 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 16 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 17 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 18 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 C -0.07 -0.79 3.37 -104.62 -0.35 -1.14 16 23 C -0.08 -0.97 7.89 -39.59 -0.31 -1.28 16 24 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 25 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 27 C -0.11 -1.07 9.67 -39.58 -0.38 -1.46 16 28 H 0.09 0.74 7.84 -52.49 -0.41 0.32 16 29 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 30 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.62 7.03 -51.93 -0.37 0.26 16 33 H 0.07 0.77 7.21 -51.93 -0.37 0.40 16 34 H 0.09 1.07 8.00 -51.93 -0.42 0.66 16 35 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 36 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 37 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.12 1.40 7.48 -52.48 -0.39 1.01 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.12 0.98 7.95 -52.49 -0.42 0.56 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -32.38 374.68 -8.18 -40.57 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.00 Total: 10.14 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -2.53 Total: -2.93 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.67 Total: -37.45 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.95 Total: -31.65 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.38 -8.18 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778555410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.378 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds