Wall clock time and date at job start Tue Mar 31 2020 11:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 C 1.53000 * 109.46860 * 125.27738 * 3 2 1 5 5 C 1.53005 * 109.47235 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.46969 * 304.99465 * 5 4 3 7 7 C 1.50694 * 109.47082 * 184.99865 * 5 4 3 8 8 O 1.20827 * 120.00554 * 239.99645 * 7 5 4 9 9 O 1.34237 * 120.00434 * 60.00005 * 7 5 4 10 10 C 1.45196 * 117.00604 * 179.97438 * 9 7 5 11 11 C 1.50691 * 109.47531 * 179.97438 * 10 9 7 12 12 O 1.21303 * 119.99614 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00593 * 180.02562 * 11 10 9 14 14 C 1.37094 * 120.00407 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00217 * 359.97438 * 14 13 11 16 16 C 1.38945 * 120.00131 * 179.97438 * 14 13 11 17 17 N 1.31419 * 119.99951 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00378 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47036 * 59.99431 * 18 16 14 20 20 H 1.48496 * 109.47558 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46772 * 300.00128 * 18 16 14 22 22 C 1.50695 * 109.47278 * 65.00008 * 5 4 3 23 23 C 1.38236 * 120.00307 * 59.72399 * 22 5 4 24 24 C 1.38230 * 120.00032 * 179.81006 * 23 22 5 25 25 C 1.38231 * 120.00292 * 0.40384 * 24 23 22 26 26 C 1.38241 * 119.99715 * 359.85411 * 25 24 23 27 27 C 1.38229 * 120.00174 * 359.95439 * 26 25 24 28 28 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 29 29 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 30 30 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 31 31 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 32 32 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 33 33 H 1.09007 * 109.47145 * 300.00092 * 4 3 2 34 34 H 1.09001 * 109.47134 * 59.99947 * 4 3 2 35 35 H 1.09002 * 109.46975 * 299.99996 * 10 9 7 36 36 H 1.09003 * 109.46490 * 59.99777 * 10 9 7 37 37 H 0.97000 * 119.99569 * 359.97438 * 13 11 10 38 38 H 0.97001 * 119.99982 * 179.97438 * 17 16 14 39 39 H 1.08004 * 119.99443 * 0.02562 * 23 22 5 40 40 H 1.07998 * 119.99896 * 180.23195 * 24 23 22 41 41 H 1.07997 * 120.00541 * 179.83495 * 25 24 23 42 42 H 1.08000 * 119.99714 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.00381 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0399 1.3302 1.1776 5 6 3.8044 2.6555 1.1781 6 1 4.2865 2.7972 0.2108 7 6 4.8510 2.6313 2.2620 8 8 4.8207 3.4505 3.1497 9 8 5.8172 1.6996 2.2416 10 6 6.7918 1.7368 3.3172 11 6 7.7904 0.6240 3.1290 12 8 7.6906 -0.1265 2.1812 13 7 8.7942 0.4624 4.0137 14 6 9.7029 -0.5496 3.8422 15 1 9.6142 -1.2178 2.9984 16 6 10.7381 -0.7158 4.7540 17 7 10.8464 0.0976 5.7805 18 14 11.9767 -2.0944 4.5200 19 1 12.6697 -1.9215 3.2180 20 1 12.9737 -2.0561 5.6198 21 1 11.2716 -3.4013 4.5357 22 6 2.8446 3.7892 1.4319 23 6 2.1082 3.8227 2.6013 24 6 1.2306 4.8646 2.8359 25 6 1.0832 5.8687 1.8974 26 6 1.8156 5.8324 0.7255 27 6 2.6961 4.7926 0.4927 28 1 -0.5401 0.9353 0.0045 29 1 -0.5400 -0.9353 -0.0045 30 1 1.8500 -0.9353 -0.0046 31 1 2.6173 1.4049 -0.9334 32 1 1.3589 2.1314 0.0945 33 1 2.4859 1.2304 2.1111 34 1 3.7444 0.5039 1.0831 35 1 7.3096 2.6959 3.3052 36 1 6.2831 1.6103 4.2729 37 1 8.8741 1.0628 4.7714 38 1 11.5688 -0.0187 6.4173 39 1 2.2212 3.0365 3.3333 40 1 0.6581 4.8927 3.7512 41 1 0.3956 6.6814 2.0794 42 1 1.7001 6.6167 -0.0079 43 1 3.2681 4.7640 -0.4230 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778555410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:03 Heat of formation + Delta-G solvation = -105.660779 kcal Electronic energy + Delta-G solvation = -25508.449282 eV Core-core repulsion = 21711.114672 eV Total energy + Delta-G solvation = -3797.334610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98449 -40.40691 -39.78132 -37.54049 -37.14612 -36.04109 -34.44460 -33.42658 -31.78653 -30.90619 -30.21117 -28.09852 -26.50994 -24.00019 -23.35553 -23.25699 -21.45473 -21.09318 -20.63809 -20.08727 -18.76187 -18.17705 -17.79972 -17.49884 -17.20904 -16.55441 -16.42271 -15.95844 -15.92989 -15.69111 -15.50902 -15.05046 -14.64394 -14.40376 -14.22101 -14.03006 -13.68048 -13.61109 -13.55685 -13.51682 -12.97570 -12.93054 -12.75004 -12.49834 -12.13597 -12.12027 -12.03270 -11.88684 -11.69496 -11.65617 -11.57851 -11.45145 -10.52598 -10.19038 -10.13256 -9.77104 -9.65865 -8.53298 -6.04221 0.36328 0.54656 1.04433 1.36816 1.37213 1.43507 1.47829 1.56640 1.85752 2.28993 2.87323 3.06797 3.12097 3.40744 3.62414 3.79926 3.92401 4.05668 4.12425 4.14115 4.19164 4.20030 4.23838 4.31311 4.39746 4.50465 4.54528 4.65664 4.74257 4.86853 4.99784 5.07567 5.13707 5.17772 5.26263 5.32598 5.36062 5.58106 5.64965 5.66898 5.80088 5.87579 5.92261 6.12715 6.44133 6.61953 7.01451 7.38302 7.91602 8.63568 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.002647 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.145685 B =10577.282100 C =11717.257739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C -0.082 4.082 4 C -0.101 4.101 5 C -0.031 4.031 6 H 0.136 0.864 7 C 0.461 3.539 8 O -0.523 6.523 9 O -0.339 6.339 10 C 0.071 3.929 11 C 0.437 3.563 12 O -0.616 6.616 13 N -0.558 5.558 14 C -0.339 4.339 15 H 0.085 0.915 16 C -0.009 4.009 17 N -0.916 5.916 18 Si 0.998 3.002 19 H -0.269 1.269 20 H -0.269 1.269 21 H -0.269 1.269 22 C -0.084 4.084 23 C -0.105 4.105 24 C -0.132 4.132 25 C -0.121 4.121 26 C -0.125 4.125 27 C -0.114 4.114 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.399 0.601 38 H 0.281 0.719 39 H 0.106 0.894 40 H 0.134 0.866 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.883 9.751 -9.002 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.184 4.184 3 C -0.119 4.119 4 C -0.139 4.139 5 C -0.049 4.049 6 H 0.154 0.846 7 C 0.305 3.695 8 O -0.412 6.412 9 O -0.255 6.255 10 C -0.007 4.007 11 C 0.224 3.776 12 O -0.502 6.502 13 N -0.195 5.195 14 C -0.468 4.468 15 H 0.103 0.897 16 C -0.210 4.210 17 N -0.556 5.556 18 Si 0.821 3.179 19 H -0.194 1.194 20 H -0.194 1.194 21 H -0.194 1.194 22 C -0.084 4.084 23 C -0.123 4.123 24 C -0.150 4.150 25 C -0.138 4.138 26 C -0.143 4.143 27 C -0.132 4.132 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.234 0.766 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.165 0.835 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.786 9.502 -9.172 24.626 hybrid contribution 0.993 -0.369 0.912 1.398 sum -19.793 9.133 -8.260 23.311 Atomic orbital electron populations 1.23989 0.95785 1.02454 1.00732 1.23039 0.96444 0.98607 1.00263 1.20681 0.97660 0.95772 0.97789 1.21533 0.98134 0.93860 1.00363 1.20116 0.91080 0.96882 0.96861 0.84626 1.24322 0.81145 0.77334 0.86698 1.90655 1.74156 1.38963 1.37418 1.86556 1.37324 1.52635 1.48946 1.22500 0.89169 0.98923 0.90074 1.20067 0.84484 0.88061 0.84997 1.90525 1.76708 1.49260 1.33748 1.41742 1.23950 1.29474 1.24371 1.19694 1.06439 1.09310 1.11324 0.89683 1.26141 0.99583 1.00751 0.94483 1.69672 1.33861 1.38525 1.13556 0.84916 0.77184 0.77553 0.78272 1.19421 1.19386 1.19426 1.19298 0.97308 0.95702 0.96061 1.20998 0.96075 0.98893 0.96306 1.21345 0.98823 0.94503 1.00290 1.21497 0.99672 0.98752 0.93913 1.21433 0.96235 0.98525 0.98106 1.21289 0.99097 0.93454 0.99367 0.88082 0.87771 0.87450 0.89587 0.90685 0.91570 0.90774 0.87826 0.87877 0.76629 0.90942 0.87601 0.84827 0.83813 0.83494 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.98 14.32 67.79 0.97 -2.01 16 2 C -0.17 -2.89 9.52 25.65 0.24 -2.65 16 3 C -0.08 -1.39 5.47 29.85 0.16 -1.23 16 4 C -0.10 -2.17 4.52 30.60 0.14 -2.03 16 5 C -0.03 -0.70 2.48 -12.29 -0.03 -0.73 16 6 H 0.14 2.57 7.88 -2.39 -0.02 2.55 16 7 C 0.46 14.47 7.13 71.23 0.51 14.98 16 8 O -0.52 -18.31 14.88 21.96 0.33 -17.99 16 9 O -0.34 -12.60 9.56 -45.13 -0.43 -13.03 16 10 C 0.07 2.71 5.94 71.23 0.42 3.14 16 11 C 0.44 21.53 7.86 87.65 0.69 22.22 16 12 O -0.62 -35.03 16.08 15.70 0.25 -34.78 16 13 N -0.56 -28.86 5.29 -306.99 -1.62 -30.48 16 14 C -0.34 -19.08 9.68 84.04 0.81 -18.26 16 15 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 16 C -0.01 -0.47 5.50 84.92 0.47 0.00 16 17 N -0.92 -48.92 13.05 21.66 0.28 -48.63 16 18 Si 1.00 42.06 29.55 68.60 2.03 44.09 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 20 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 C -0.08 -1.81 3.37 -19.87 -0.07 -1.87 16 23 C -0.10 -2.38 7.89 22.27 0.18 -2.21 16 24 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 25 C -0.12 -1.90 10.05 22.27 0.22 -1.68 16 26 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 27 C -0.11 -2.01 9.67 22.27 0.22 -1.80 16 28 H 0.10 1.41 7.84 -2.91 -0.02 1.39 16 29 H 0.10 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.11 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.22 7.03 -2.39 -0.02 1.20 16 33 H 0.07 1.47 7.21 -2.38 -0.02 1.45 16 34 H 0.07 1.82 8.00 -2.39 -0.02 1.80 16 35 H 0.10 3.61 8.13 -2.39 -0.02 3.59 16 36 H 0.10 3.60 8.13 -2.39 -0.02 3.58 16 37 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 38 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 39 H 0.11 2.59 7.48 -2.91 -0.02 2.56 16 40 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 43 H 0.14 1.87 7.95 -2.91 -0.02 1.85 16 Total: -1.00 -69.81 374.68 6.50 -63.31 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: 0.28 Total: 35.60 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 5.38 Total: 1.90 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -1.34 Total: -79.11 kcal Atomic # 8 Polarization: -65.94 SS G_CDS: 0.15 Total: -65.80 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -69.81 6.50 -63.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778555410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.348 kcal (2) G-P(sol) polarization free energy of solvation -69.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds