Wall clock time and date at job start Tue Mar 31 2020 11:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33082 * 120.00101 * 2 1 4 4 C 1.50698 * 119.99781 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47051 * 95.00177 * 4 3 2 6 6 C 1.46946 * 120.00129 * 359.97438 * 3 2 1 7 7 O 1.21538 * 120.00127 * 0.02562 * 6 3 2 8 8 O 1.34801 * 120.00039 * 179.97438 * 6 3 2 9 9 C 1.45200 * 116.99860 * 180.02562 * 8 6 3 10 10 C 1.50702 * 109.47060 * 180.02562 * 9 8 6 11 11 O 1.21282 * 119.99832 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00229 * 179.97438 * 10 9 8 13 13 C 1.39233 * 120.00093 * 176.69682 * 12 10 9 14 14 C 1.39485 * 119.83194 * 217.48577 * 13 12 10 15 15 C 1.36378 * 120.16730 * 179.76021 * 14 13 12 16 16 C 1.40864 * 119.82635 * 0.51545 * 15 14 13 17 17 C 1.41156 * 120.16303 * 179.72054 * 16 15 14 18 18 H 1.08003 * 120.00159 * 157.96978 * 17 16 15 19 19 C 1.39908 * 119.99750 * 337.96746 * 17 16 15 20 20 N 1.30869 * 119.99890 * 327.61081 * 19 17 16 21 21 Si 1.86797 * 119.99914 * 147.61391 * 19 17 16 22 22 H 1.48501 * 109.47445 * 94.98226 * 21 19 17 23 23 H 1.48493 * 109.47319 * 214.98521 * 21 19 17 24 24 H 1.48505 * 109.47234 * 334.98545 * 21 19 17 25 25 C 1.40867 * 119.67457 * 359.73534 * 16 15 14 26 26 C 1.36376 * 119.82667 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.47698 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46763 * 300.00230 * 1 2 3 29 29 H 1.09000 * 109.46935 * 60.00084 * 1 2 3 30 30 H 1.07998 * 119.99420 * 180.27719 * 2 1 3 31 31 H 1.09002 * 109.46928 * 214.99620 * 4 3 2 32 32 H 1.08999 * 109.47171 * 335.00278 * 4 3 2 33 33 H 1.09000 * 109.47082 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.46801 * 299.99521 * 5 4 3 35 35 H 1.08994 * 109.47482 * 59.99456 * 5 4 3 36 36 H 1.09008 * 109.46949 * 299.99672 * 9 8 6 37 37 H 1.08997 * 109.47442 * 59.99671 * 9 8 6 38 38 H 0.97006 * 119.99410 * 356.69386 * 12 10 9 39 39 H 1.07998 * 119.91716 * 0.02562 * 14 13 12 40 40 H 1.08001 * 120.08518 * 180.24785 * 15 14 13 41 41 H 0.97000 * 119.99566 * 180.02562 * 20 19 17 42 42 H 1.08007 * 120.08912 * 179.97438 * 25 16 15 43 43 H 1.08001 * 119.91164 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1525 0.0000 4 6 3.6795 1.1524 0.0006 5 6 4.1900 1.2778 -1.4363 6 6 1.4378 2.4251 -0.0006 7 8 0.2224 2.4252 -0.0006 8 8 2.1118 3.5925 0.0000 9 6 1.3210 4.8103 -0.0001 10 6 2.2391 6.0054 -0.0001 11 8 3.4414 5.8464 0.0004 12 7 1.7240 7.2508 -0.0006 13 6 2.5703 8.3542 0.0688 14 6 2.1920 9.4733 0.8105 15 6 3.0178 10.5559 0.8872 16 6 4.2508 10.5462 0.2061 17 6 5.1084 11.6652 0.2758 18 1 6.1635 11.5502 0.0760 19 6 4.5915 12.9233 0.6037 20 7 3.3752 13.2451 0.2436 21 14 5.6377 14.1437 1.5552 22 1 6.3149 15.0620 0.6048 23 1 4.7721 14.9294 2.4709 24 1 6.6579 13.4100 2.3465 25 6 4.6236 9.4144 -0.5452 26 6 3.7894 8.3374 -0.6085 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.0469 -0.9353 -0.0045 31 1 4.0426 1.9944 0.5899 32 1 4.0426 0.2211 0.4352 33 1 5.2800 1.2773 -1.4359 34 1 3.8269 0.4359 -2.0256 35 1 3.8269 2.2090 -1.8710 36 1 0.6926 4.8354 -0.8904 37 1 0.6918 4.8350 0.8896 38 1 0.7636 7.3784 -0.0495 39 1 1.2445 9.4809 1.3288 40 1 2.7253 11.4202 1.4651 41 1 3.0170 14.1174 0.4707 42 1 5.5673 9.3999 -1.0704 43 1 4.0737 7.4691 -1.1844 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789226528.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:10 Heat of formation + Delta-G solvation = -90.945805 kcal Electronic energy + Delta-G solvation = -25208.013457 eV Core-core repulsion = 21411.316936 eV Total energy + Delta-G solvation = -3796.696521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.76728 -39.53651 -37.47907 -36.75424 -35.82130 -34.48830 -33.10911 -32.11838 -29.95481 -29.53180 -28.46948 -27.36612 -24.87465 -23.36201 -22.81876 -21.70135 -20.80279 -19.93577 -19.57290 -17.56547 -17.44355 -16.99274 -16.73879 -16.10183 -15.64751 -15.23196 -14.95858 -14.79676 -14.30574 -14.01433 -13.75063 -13.59165 -13.22081 -13.10754 -12.82511 -12.68436 -12.58232 -12.47733 -12.35153 -12.11920 -12.01916 -11.47855 -11.38062 -11.17693 -11.09164 -10.97702 -10.82289 -10.56624 -10.28998 -10.19322 -9.78499 -9.48638 -9.46348 -9.10456 -8.74266 -7.58373 -7.19597 -6.92490 -4.30770 0.87903 2.30964 2.52128 2.68958 2.91038 3.03411 3.06690 3.09884 3.29573 3.72683 3.86863 4.42443 4.46243 4.50370 4.82404 4.86229 5.01442 5.04849 5.07380 5.19910 5.21702 5.41582 5.47661 5.64203 5.74023 5.78535 5.82104 5.99222 6.11803 6.15620 6.18818 6.32767 6.38921 6.71326 6.90634 6.96683 7.09563 7.24436 7.51806 7.56858 7.65546 7.84538 7.98655 8.20268 8.22485 8.51073 8.67301 8.80637 8.95206 9.98571 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032458 B = 0.002209 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.445071 B =12670.139727 C =13247.770276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.060 4.060 3 C -0.163 4.163 4 C -0.082 4.082 5 C -0.147 4.147 6 C 0.498 3.502 7 O -0.510 6.510 8 O -0.323 6.323 9 C 0.052 3.948 10 C 0.498 3.502 11 O -0.511 6.511 12 N -0.643 5.643 13 C -0.025 4.025 14 C -0.099 4.099 15 C -0.172 4.172 16 C 0.113 3.887 17 C -0.463 4.463 18 H 0.083 0.917 19 C 0.088 3.912 20 N -0.768 5.768 21 Si 0.897 3.103 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.257 1.257 25 C -0.224 4.224 26 C -0.064 4.064 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.396 0.604 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.284 0.716 42 H 0.095 0.905 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.873 -19.519 -0.141 20.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.078 4.078 3 C -0.164 4.164 4 C -0.120 4.120 5 C -0.204 4.204 6 C 0.345 3.655 7 O -0.401 6.401 8 O -0.238 6.238 9 C -0.026 4.026 10 C 0.282 3.718 11 O -0.386 6.386 12 N -0.288 5.288 13 C -0.116 4.116 14 C -0.119 4.119 15 C -0.192 4.192 16 C 0.111 3.889 17 C -0.491 4.491 18 H 0.101 0.899 19 C -0.134 4.134 20 N -0.391 5.391 21 Si 0.720 3.280 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.181 1.181 25 C -0.244 4.244 26 C -0.084 4.084 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.152 0.848 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.229 0.771 39 H 0.108 0.892 40 H 0.126 0.874 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.537 -19.422 -0.154 20.197 hybrid contribution -0.364 0.835 0.396 0.994 sum -5.901 -18.587 0.243 19.503 Atomic orbital electron populations 1.21136 0.91595 1.01621 1.04177 1.23783 0.97266 0.96637 0.90117 1.20818 0.96871 0.89570 1.09181 1.20506 0.89357 1.03415 0.98693 1.21734 1.01155 1.02092 0.95423 1.21473 0.86086 0.84876 0.73052 1.90844 1.14790 1.88104 1.46364 1.86665 1.39780 1.13606 1.83712 1.22710 0.93267 0.81990 1.04595 1.19923 0.89170 0.83772 0.78887 1.90734 1.14802 1.85294 1.47753 1.42727 1.09600 1.04127 1.72338 1.16995 0.95506 0.88427 1.10695 1.20164 0.98858 0.94084 0.98825 1.20624 0.96608 0.97569 1.04360 1.17607 0.91424 0.91907 0.87998 1.19527 0.96217 0.91754 1.41599 0.89928 1.25959 0.94979 0.99329 0.93178 1.69944 1.16608 1.21389 1.31117 0.86494 0.81148 0.79839 0.80525 1.19433 1.19864 1.18052 1.20600 1.01029 0.96147 1.06641 1.20302 0.93570 0.97187 0.97303 0.92416 0.89911 0.89933 0.84771 0.89719 0.90858 0.92040 0.93034 0.92090 0.88534 0.88421 0.77055 0.89176 0.87410 0.90543 0.88647 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 8.45 36.01 0.30 -0.73 16 2 C -0.06 -0.46 9.94 -36.10 -0.36 -0.82 16 3 C -0.16 -1.65 5.25 -102.89 -0.54 -2.19 16 4 C -0.08 -0.77 5.85 -27.88 -0.16 -0.93 16 5 C -0.15 -1.36 9.90 37.16 0.37 -0.99 16 6 C 0.50 6.40 7.85 34.26 0.27 6.67 16 7 O -0.51 -6.93 12.86 -19.29 -0.25 -7.18 16 8 O -0.32 -4.70 9.11 -47.45 -0.43 -5.13 16 9 C 0.05 0.69 5.96 36.01 0.21 0.91 16 10 C 0.50 8.73 7.72 -10.99 -0.08 8.64 16 11 O -0.51 -11.17 14.12 -14.11 -0.20 -11.37 16 12 N -0.64 -11.20 5.30 -9.74 -0.05 -11.25 16 13 C -0.02 -0.55 6.25 -83.57 -0.52 -1.07 16 14 C -0.10 -2.24 9.90 -39.79 -0.39 -2.64 16 15 C -0.17 -4.35 8.74 -39.26 -0.34 -4.70 16 16 C 0.11 3.02 5.57 -106.80 -0.60 2.42 16 17 C -0.46 -12.15 8.94 -37.85 -0.34 -12.49 16 18 H 0.08 2.10 8.02 -52.48 -0.42 1.68 16 19 C 0.09 2.14 4.77 -17.34 -0.08 2.06 16 20 N -0.77 -19.18 11.78 55.55 0.65 -18.53 16 21 Si 0.90 18.05 29.66 -169.99 -5.04 13.00 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 25 C -0.22 -5.70 9.74 -39.26 -0.38 -6.08 16 26 C -0.06 -1.54 8.59 -39.79 -0.34 -1.88 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.77 7.22 -51.93 -0.37 0.40 16 29 H 0.08 0.77 7.22 -51.93 -0.37 0.39 16 30 H 0.13 0.67 8.02 -52.49 -0.42 0.25 16 31 H 0.08 0.94 7.83 -51.93 -0.41 0.53 16 32 H 0.07 0.51 8.01 -51.93 -0.42 0.10 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.09 8.14 -51.92 -0.42 0.66 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.40 5.30 8.82 -40.82 -0.36 4.94 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.11 2.76 6.52 -52.49 -0.34 2.42 16 41 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 42 H 0.10 2.31 8.06 -52.48 -0.42 1.88 16 43 H 0.10 2.44 6.45 -52.49 -0.34 2.10 16 LS Contribution 368.94 15.07 5.56 5.56 Total: -1.00 -31.01 368.94 -8.72 -39.74 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.97 Total: 8.96 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.99 Total: -13.81 kcal Atomic # 7 Polarization: -30.38 SS G_CDS: 0.60 Total: -29.78 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.88 Total: -23.67 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.04 Total: 13.00 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.01 -8.72 -39.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789226528.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.210 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds