Wall clock time and date at job start Tue Mar 31 2020 11:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33082 * 120.00101 * 2 1 4 4 C 1.50698 * 119.99781 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47051 * 95.00177 * 4 3 2 6 6 C 1.46946 * 120.00129 * 359.97438 * 3 2 1 7 7 O 1.21538 * 120.00127 * 0.02562 * 6 3 2 8 8 O 1.34801 * 120.00039 * 179.97438 * 6 3 2 9 9 C 1.45200 * 116.99860 * 180.02562 * 8 6 3 10 10 C 1.50702 * 109.47060 * 180.02562 * 9 8 6 11 11 O 1.21282 * 119.99832 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00229 * 179.97438 * 10 9 8 13 13 C 1.39233 * 120.00093 * 176.69682 * 12 10 9 14 14 C 1.39485 * 119.83194 * 217.48577 * 13 12 10 15 15 C 1.36378 * 120.16730 * 179.76021 * 14 13 12 16 16 C 1.40864 * 119.82635 * 0.51545 * 15 14 13 17 17 C 1.41156 * 120.16303 * 179.72054 * 16 15 14 18 18 H 1.08003 * 120.00159 * 157.96978 * 17 16 15 19 19 C 1.39908 * 119.99750 * 337.96746 * 17 16 15 20 20 N 1.30869 * 119.99890 * 327.61081 * 19 17 16 21 21 Si 1.86797 * 119.99914 * 147.61391 * 19 17 16 22 22 H 1.48501 * 109.47445 * 94.98226 * 21 19 17 23 23 H 1.48493 * 109.47319 * 214.98521 * 21 19 17 24 24 H 1.48505 * 109.47234 * 334.98545 * 21 19 17 25 25 C 1.40867 * 119.67457 * 359.73534 * 16 15 14 26 26 C 1.36376 * 119.82667 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.47698 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46763 * 300.00230 * 1 2 3 29 29 H 1.09000 * 109.46935 * 60.00084 * 1 2 3 30 30 H 1.07998 * 119.99420 * 180.27719 * 2 1 3 31 31 H 1.09002 * 109.46928 * 214.99620 * 4 3 2 32 32 H 1.08999 * 109.47171 * 335.00278 * 4 3 2 33 33 H 1.09000 * 109.47082 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.46801 * 299.99521 * 5 4 3 35 35 H 1.08994 * 109.47482 * 59.99456 * 5 4 3 36 36 H 1.09008 * 109.46949 * 299.99672 * 9 8 6 37 37 H 1.08997 * 109.47442 * 59.99671 * 9 8 6 38 38 H 0.97006 * 119.99410 * 356.69386 * 12 10 9 39 39 H 1.07998 * 119.91716 * 0.02562 * 14 13 12 40 40 H 1.08001 * 120.08518 * 180.24785 * 15 14 13 41 41 H 0.97000 * 119.99566 * 180.02562 * 20 19 17 42 42 H 1.08007 * 120.08912 * 179.97438 * 25 16 15 43 43 H 1.08001 * 119.91164 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1525 0.0000 4 6 3.6795 1.1524 0.0006 5 6 4.1900 1.2778 -1.4363 6 6 1.4378 2.4251 -0.0006 7 8 0.2224 2.4252 -0.0006 8 8 2.1118 3.5925 0.0000 9 6 1.3210 4.8103 -0.0001 10 6 2.2391 6.0054 -0.0001 11 8 3.4414 5.8464 0.0004 12 7 1.7240 7.2508 -0.0006 13 6 2.5703 8.3542 0.0688 14 6 2.1920 9.4733 0.8105 15 6 3.0178 10.5559 0.8872 16 6 4.2508 10.5462 0.2061 17 6 5.1084 11.6652 0.2758 18 1 6.1635 11.5502 0.0760 19 6 4.5915 12.9233 0.6037 20 7 3.3752 13.2451 0.2436 21 14 5.6377 14.1437 1.5552 22 1 6.3149 15.0620 0.6048 23 1 4.7721 14.9294 2.4709 24 1 6.6579 13.4100 2.3465 25 6 4.6236 9.4144 -0.5452 26 6 3.7894 8.3374 -0.6085 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.0469 -0.9353 -0.0045 31 1 4.0426 1.9944 0.5899 32 1 4.0426 0.2211 0.4352 33 1 5.2800 1.2773 -1.4359 34 1 3.8269 0.4359 -2.0256 35 1 3.8269 2.2090 -1.8710 36 1 0.6926 4.8354 -0.8904 37 1 0.6918 4.8350 0.8896 38 1 0.7636 7.3784 -0.0495 39 1 1.2445 9.4809 1.3288 40 1 2.7253 11.4202 1.4651 41 1 3.0170 14.1174 0.4707 42 1 5.5673 9.3999 -1.0704 43 1 4.0737 7.4691 -1.1844 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789226528.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:09 Heat of formation + Delta-G solvation = -107.295121 kcal Electronic energy + Delta-G solvation = -25208.722416 eV Core-core repulsion = 21411.316936 eV Total energy + Delta-G solvation = -3797.405480 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.81435 -41.01613 -39.12541 -37.87993 -36.64464 -36.21398 -34.86984 -32.80377 -31.60495 -31.35835 -29.86624 -28.21673 -26.59795 -24.36896 -23.52946 -23.40603 -22.58686 -21.40605 -20.59143 -19.32841 -18.81247 -18.20745 -17.79635 -17.68341 -17.01578 -16.59601 -16.21004 -15.80015 -15.57754 -15.40144 -15.11781 -14.65785 -14.47360 -14.40588 -14.00333 -13.86237 -13.80407 -13.78348 -13.64085 -13.30422 -13.23503 -13.03805 -12.85422 -12.70217 -12.34684 -12.08974 -11.93547 -11.88179 -11.78023 -11.61738 -11.21381 -11.12937 -10.81520 -10.51915 -10.15894 -9.50509 -9.05359 -8.75741 -6.25763 0.12147 0.76594 1.11623 1.29119 1.35439 1.40647 1.53315 1.69093 1.83403 2.19055 2.46223 2.62259 3.56908 3.66029 3.71423 3.75466 4.00128 4.03279 4.26393 4.34082 4.37477 4.46119 4.50847 4.55027 4.78943 4.81176 4.87770 5.04435 5.06686 5.09044 5.12234 5.16463 5.17461 5.24339 5.38487 5.39821 5.47933 5.59256 5.61806 5.83568 5.99013 6.05641 6.32705 6.55684 6.60830 6.68545 6.86921 6.95604 7.29165 8.18434 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032458 B = 0.002209 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.445071 B =12670.139727 C =13247.770276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.028 4.028 3 C -0.193 4.193 4 C -0.077 4.077 5 C -0.146 4.146 6 C 0.494 3.506 7 O -0.524 6.524 8 O -0.345 6.345 9 C 0.060 3.940 10 C 0.500 3.500 11 O -0.558 6.558 12 N -0.634 5.634 13 C -0.012 4.012 14 C -0.096 4.096 15 C -0.191 4.191 16 C 0.084 3.916 17 C -0.503 4.503 18 H 0.075 0.925 19 C 0.052 3.948 20 N -0.796 5.796 21 Si 0.972 3.028 22 H -0.259 1.259 23 H -0.260 1.260 24 H -0.262 1.262 25 C -0.246 4.246 26 C -0.075 4.075 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.173 0.827 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.032 0.968 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.419 0.581 39 H 0.126 0.874 40 H 0.100 0.900 41 H 0.295 0.705 42 H 0.092 0.908 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 -21.343 0.613 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.046 4.046 3 C -0.194 4.194 4 C -0.115 4.115 5 C -0.203 4.203 6 C 0.342 3.658 7 O -0.416 6.416 8 O -0.261 6.261 9 C -0.017 4.017 10 C 0.287 3.713 11 O -0.436 6.436 12 N -0.281 5.281 13 C -0.104 4.104 14 C -0.116 4.116 15 C -0.210 4.210 16 C 0.082 3.918 17 C -0.530 4.530 18 H 0.094 0.906 19 C -0.168 4.168 20 N -0.419 5.419 21 Si 0.792 3.208 22 H -0.184 1.184 23 H -0.184 1.184 24 H -0.186 1.186 25 C -0.266 4.266 26 C -0.095 4.095 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.190 0.810 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.257 0.743 39 H 0.144 0.856 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.002 -21.261 0.588 22.392 hybrid contribution -0.039 1.214 0.107 1.220 sum -7.041 -20.047 0.695 21.259 Atomic orbital electron populations 1.21162 0.91840 1.03034 1.02796 1.24192 0.97204 0.97156 0.86035 1.20895 0.97186 0.88971 1.12380 1.20462 0.89039 1.03758 0.98195 1.21731 1.01358 1.01382 0.95823 1.22031 0.86213 0.85019 0.72539 1.90831 1.15194 1.88165 1.47411 1.86667 1.40851 1.14404 1.84177 1.22658 0.91965 0.80053 1.06980 1.20639 0.89099 0.84631 0.76954 1.90721 1.17223 1.86023 1.49613 1.42594 1.10346 1.03086 1.72054 1.17047 0.95152 0.89539 1.08710 1.20447 0.99731 0.93117 0.98283 1.20666 0.96988 0.98424 1.04972 1.17924 0.92487 0.92538 0.88869 1.19724 0.96037 0.93045 1.44183 0.90647 1.26742 0.96312 1.00547 0.93235 1.69935 1.17997 1.22552 1.31444 0.85359 0.79203 0.77221 0.78998 1.18394 1.18410 1.18576 1.20725 1.01598 0.96870 1.07429 1.20408 0.94526 0.96657 0.97878 0.89607 0.91249 0.91292 0.81007 0.92377 0.87950 0.91734 0.91171 0.94868 0.85978 0.85923 0.74303 0.85589 0.88176 0.89386 0.88956 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.45 71.24 0.60 -1.16 16 2 C -0.03 -0.34 9.94 24.53 0.24 -0.10 16 3 C -0.19 -3.58 5.25 -18.74 -0.10 -3.68 16 4 C -0.08 -1.34 5.85 29.85 0.17 -1.17 16 5 C -0.15 -2.59 9.90 71.98 0.71 -1.88 16 6 C 0.49 12.24 7.85 70.10 0.55 12.79 16 7 O -0.52 -13.57 12.86 19.71 0.25 -13.31 16 8 O -0.35 -9.95 9.11 -50.74 -0.46 -10.41 16 9 C 0.06 1.52 5.96 71.24 0.42 1.94 16 10 C 0.50 17.18 7.72 87.66 0.68 17.85 16 11 O -0.56 -24.82 14.12 15.76 0.22 -24.60 16 12 N -0.63 -21.16 5.30 -303.12 -1.61 -22.77 16 13 C -0.01 -0.51 6.25 38.56 0.24 -0.27 16 14 C -0.10 -4.28 9.90 22.14 0.22 -4.06 16 15 C -0.19 -9.85 8.74 22.48 0.20 -9.65 16 16 C 0.08 4.68 5.57 -21.28 -0.12 4.56 16 17 C -0.50 -27.43 8.94 23.39 0.21 -27.22 16 18 H 0.08 4.05 8.02 -2.91 -0.02 4.02 16 19 C 0.05 2.56 4.77 85.24 0.41 2.96 16 20 N -0.80 -40.22 11.78 21.82 0.26 -39.97 16 21 Si 0.97 37.26 29.66 68.60 2.03 39.29 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 23 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 24 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 25 C -0.25 -13.13 9.74 22.48 0.22 -12.91 16 26 C -0.07 -3.70 8.59 22.13 0.19 -3.51 16 27 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 1.16 7.22 -2.39 -0.02 1.15 16 29 H 0.07 1.16 7.22 -2.39 -0.02 1.14 16 30 H 0.17 0.82 8.02 -2.91 -0.02 0.80 16 31 H 0.06 1.31 7.83 -2.39 -0.02 1.29 16 32 H 0.10 1.14 8.01 -2.39 -0.02 1.12 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.03 0.75 8.14 -2.39 -0.02 0.74 16 36 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16 37 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.42 10.13 8.82 -92.70 -0.82 9.31 16 39 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 40 H 0.10 5.23 6.52 -2.91 -0.02 5.21 16 41 H 0.30 13.19 8.30 -92.71 -0.77 12.42 16 42 H 0.09 4.78 8.06 -2.91 -0.02 4.75 16 43 H 0.10 4.95 6.45 -2.91 -0.02 4.93 16 Total: -1.00 -70.78 368.94 5.76 -65.02 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.21 Total: 32.24 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 4.85 Total: -25.50 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -1.35 Total: -62.74 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: 0.01 Total: -48.32 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Total: -70.78 5.76 -65.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789226528.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.273 kcal (2) G-P(sol) polarization free energy of solvation -70.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds