Wall clock time and date at job start Tue Mar 31 2020 11:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33082 * 119.99721 * 2 1 4 4 C 1.50699 * 120.00358 * 359.97438 * 3 2 1 5 5 C 1.52994 * 109.47047 * 95.00237 * 4 3 2 6 6 C 1.46955 * 119.99508 * 179.97438 * 3 2 1 7 7 O 1.21534 * 120.00539 * 359.97438 * 6 3 2 8 8 O 1.34806 * 119.99722 * 179.97438 * 6 3 2 9 9 C 1.45203 * 116.99917 * 180.02562 * 8 6 3 10 10 C 1.50697 * 109.46873 * 179.97438 * 9 8 6 11 11 O 1.21280 * 120.00282 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99547 * 179.97438 * 10 9 8 13 13 C 1.39234 * 119.99559 * 176.69844 * 12 10 9 14 14 C 1.39485 * 119.83300 * 217.48439 * 13 12 10 15 15 C 1.36374 * 120.16805 * 179.75881 * 14 13 12 16 16 C 1.40871 * 119.83024 * 0.52330 * 15 14 13 17 17 C 1.41149 * 120.16324 * 179.71904 * 16 15 14 18 18 H 1.08002 * 120.00006 * 157.97019 * 17 16 15 19 19 C 1.39900 * 120.00004 * 337.95999 * 17 16 15 20 20 N 1.30873 * 120.00660 * 327.61824 * 19 17 16 21 21 Si 1.86811 * 119.99813 * 147.61749 * 19 17 16 22 22 H 1.48497 * 109.47135 * 94.98996 * 21 19 17 23 23 H 1.48501 * 109.47033 * 214.98986 * 21 19 17 24 24 H 1.48503 * 109.46834 * 334.98783 * 21 19 17 25 25 C 1.40864 * 119.66830 * 359.73295 * 16 15 14 26 26 C 1.36377 * 119.83081 * 0.02562 * 25 16 15 27 27 H 1.09005 * 109.47211 * 300.00287 * 1 2 3 28 28 H 1.09001 * 109.47092 * 60.00107 * 1 2 3 29 29 H 1.08997 * 109.47064 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.00080 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.46890 * 214.99906 * 4 3 2 32 32 H 1.08995 * 109.46825 * 334.99612 * 4 3 2 33 33 H 1.08996 * 109.47282 * 299.99902 * 5 4 3 34 34 H 1.09003 * 109.47294 * 60.00326 * 5 4 3 35 35 H 1.08999 * 109.47131 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.46876 * 300.00462 * 9 8 6 37 37 H 1.08999 * 109.46861 * 59.99434 * 9 8 6 38 38 H 0.96995 * 120.00374 * 356.70787 * 12 10 9 39 39 H 1.08001 * 119.91187 * 0.02816 * 14 13 12 40 40 H 1.08003 * 120.08733 * 180.25268 * 15 14 13 41 41 H 0.97000 * 120.00308 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.08572 * 179.97438 * 25 16 15 43 43 H 1.08003 * 119.91312 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1526 0.0000 4 6 1.4189 2.4577 -0.0006 5 6 1.2723 2.9625 1.4362 6 6 3.6419 1.1525 0.0006 7 8 4.2496 0.1000 0.0015 8 8 4.3159 2.3200 0.0000 9 6 5.7660 2.2440 0.0001 10 6 6.3419 3.6365 -0.0012 11 8 5.6031 4.5983 -0.0025 12 7 7.6781 3.8131 -0.0008 13 6 8.2105 5.0977 -0.0715 14 6 9.3689 5.3289 -0.8133 15 6 9.8935 6.5853 -0.8912 16 6 9.2687 7.6489 -0.2109 17 6 9.8090 8.9510 -0.2818 18 1 9.1819 9.8074 -0.0826 19 6 11.1569 9.1321 -0.6098 20 7 12.0438 8.2399 -0.2492 21 14 11.6907 10.6476 -1.5628 22 1 12.1476 11.6939 -0.6132 23 1 12.8039 10.2899 -2.4783 24 1 10.5451 11.1635 -2.3543 25 6 8.1022 7.4065 0.5407 26 6 7.5865 6.1456 0.6051 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.0470 -0.9353 0.0004 31 1 1.9665 3.1931 -0.5900 32 1 0.4309 2.3065 -0.4353 33 1 0.7247 2.2271 2.0256 34 1 2.2604 3.1137 1.8708 35 1 0.7269 3.9062 1.4358 36 1 6.1019 1.7121 0.8903 37 1 6.1018 1.7113 -0.8896 38 1 8.2688 3.0453 0.0484 39 1 9.8490 4.5116 -1.3310 40 1 10.7881 6.7636 -1.4693 41 1 12.9783 8.3653 -0.4770 42 1 7.6179 8.2169 1.0653 43 1 6.6925 5.9582 1.1813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789226529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:14 Heat of formation + Delta-G solvation = -93.979680 kcal Electronic energy + Delta-G solvation = -25089.483689 eV Core-core repulsion = 21292.655610 eV Total energy + Delta-G solvation = -3796.828079 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.71309 -39.51606 -37.45897 -36.83220 -36.16450 -34.48847 -33.10918 -31.62699 -29.99016 -29.54102 -28.71800 -27.70191 -24.83039 -23.49667 -22.79868 -21.66545 -20.79485 -19.84668 -18.92765 -17.58643 -17.49954 -17.31571 -16.72073 -16.45424 -16.03376 -15.22889 -14.91118 -14.71157 -14.17355 -13.99708 -13.94606 -13.47745 -13.37332 -13.08058 -12.85700 -12.68014 -12.64483 -12.48769 -12.32942 -12.11934 -12.02072 -11.48417 -11.34742 -11.17690 -11.11556 -10.97687 -10.85193 -10.60580 -10.56192 -10.19824 -9.78502 -9.48985 -9.48285 -9.10590 -8.74269 -7.58340 -7.19619 -6.92405 -4.30774 0.83374 2.28007 2.51813 2.69943 2.90969 3.03428 3.06729 3.09876 3.29422 3.71253 3.86885 4.46143 4.47317 4.48569 4.73498 4.85181 4.88019 5.01831 5.04774 5.09669 5.21180 5.24028 5.35800 5.54195 5.64215 5.74488 5.78731 5.98453 6.11623 6.15061 6.16942 6.25765 6.38809 6.71270 6.90611 6.96684 7.09532 7.24412 7.51262 7.55232 7.65018 7.84447 7.98659 8.20214 8.22491 8.51060 8.67102 8.80665 8.95196 9.98631 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033201 B = 0.002158 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.145267 B =12972.242723 C =13510.979183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.063 4.063 3 C -0.160 4.160 4 C -0.086 4.086 5 C -0.146 4.146 6 C 0.503 3.497 7 O -0.517 6.517 8 O -0.321 6.321 9 C 0.051 3.949 10 C 0.498 3.502 11 O -0.511 6.511 12 N -0.643 5.643 13 C -0.025 4.025 14 C -0.099 4.099 15 C -0.172 4.172 16 C 0.113 3.887 17 C -0.463 4.463 18 H 0.083 0.917 19 C 0.088 3.912 20 N -0.768 5.768 21 Si 0.896 3.104 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.257 1.257 25 C -0.224 4.224 26 C -0.064 4.064 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.128 0.872 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.396 0.604 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.284 0.716 42 H 0.095 0.905 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.168 -14.131 0.154 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.082 4.082 3 C -0.161 4.161 4 C -0.124 4.124 5 C -0.203 4.203 6 C 0.349 3.651 7 O -0.407 6.407 8 O -0.236 6.236 9 C -0.026 4.026 10 C 0.283 3.717 11 O -0.386 6.386 12 N -0.288 5.288 13 C -0.116 4.116 14 C -0.119 4.119 15 C -0.191 4.191 16 C 0.111 3.889 17 C -0.491 4.491 18 H 0.101 0.899 19 C -0.134 4.134 20 N -0.391 5.391 21 Si 0.720 3.280 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.181 1.181 25 C -0.244 4.244 26 C -0.084 4.084 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.146 0.854 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.230 0.770 39 H 0.108 0.892 40 H 0.126 0.874 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.256 -13.789 0.167 20.565 hybrid contribution 1.051 0.010 -0.404 1.126 sum -14.205 -13.779 -0.237 19.791 Atomic orbital electron populations 1.21027 0.91317 1.03307 1.03179 1.23700 0.96819 0.97372 0.90288 1.20760 0.88857 0.97609 1.08875 1.20556 0.99583 0.93443 0.98773 1.21687 1.02481 1.00740 0.95384 1.21453 0.89515 0.81520 0.72573 1.90843 1.70363 1.32761 1.46782 1.86662 1.20063 1.33257 1.83578 1.22733 0.78207 0.97023 1.04684 1.19906 0.83200 0.89710 0.78896 1.90733 1.58664 1.41407 1.47764 1.42725 1.05222 1.08508 1.72317 1.16997 1.00499 0.83429 1.10709 1.20164 0.96011 0.96933 0.98822 1.20622 1.02170 0.91986 1.04351 1.17608 0.90417 0.92918 0.87998 1.19524 0.94363 0.93611 1.41601 0.89927 1.25956 0.96517 0.97772 0.93179 1.69942 1.03125 1.34879 1.31115 0.86499 0.79180 0.81818 0.80532 1.19430 1.19865 1.18050 1.20598 1.01720 0.95450 1.06640 1.20305 0.98052 0.92708 0.97309 0.90222 0.90167 0.91109 0.85388 0.89771 0.90547 0.93036 0.92067 0.91990 0.88464 0.88367 0.77039 0.89171 0.87418 0.90539 0.88648 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.65 8.84 36.01 0.32 -0.33 16 2 C -0.06 -0.51 9.84 -36.10 -0.36 -0.86 16 3 C -0.16 -1.64 5.25 -102.89 -0.54 -2.18 16 4 C -0.09 -0.80 5.46 -27.89 -0.15 -0.95 16 5 C -0.15 -1.32 9.89 37.15 0.37 -0.96 16 6 C 0.50 6.70 7.88 34.26 0.27 6.97 16 7 O -0.52 -7.63 16.01 -19.29 -0.31 -7.94 16 8 O -0.32 -4.74 9.11 -47.47 -0.43 -5.17 16 9 C 0.05 0.69 5.96 36.00 0.21 0.91 16 10 C 0.50 8.77 7.72 -10.98 -0.08 8.69 16 11 O -0.51 -11.17 14.12 -14.10 -0.20 -11.37 16 12 N -0.64 -11.23 5.30 -9.74 -0.05 -11.28 16 13 C -0.02 -0.55 6.25 -83.57 -0.52 -1.07 16 14 C -0.10 -2.25 9.90 -39.79 -0.39 -2.64 16 15 C -0.17 -4.35 8.74 -39.26 -0.34 -4.69 16 16 C 0.11 3.02 5.57 -106.80 -0.60 2.42 16 17 C -0.46 -12.15 8.94 -37.86 -0.34 -12.49 16 18 H 0.08 2.10 8.02 -52.49 -0.42 1.68 16 19 C 0.09 2.15 4.77 -17.34 -0.08 2.06 16 20 N -0.77 -19.19 11.78 55.55 0.65 -18.54 16 21 Si 0.90 18.05 29.66 -169.99 -5.04 13.01 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 25 C -0.22 -5.70 9.74 -39.26 -0.38 -6.08 16 26 C -0.06 -1.54 8.59 -39.79 -0.34 -1.88 16 27 H 0.08 0.36 7.82 -51.93 -0.41 -0.05 16 28 H 0.08 0.35 7.42 -51.93 -0.39 -0.04 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.13 1.06 7.49 -52.49 -0.39 0.66 16 31 H 0.08 0.93 7.83 -51.93 -0.41 0.52 16 32 H 0.08 0.52 6.32 -51.93 -0.33 0.20 16 33 H 0.05 0.39 7.86 -51.93 -0.41 -0.02 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.40 5.33 8.82 -40.82 -0.36 4.97 16 39 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 40 H 0.11 2.76 6.52 -52.48 -0.34 2.42 16 41 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 42 H 0.10 2.31 8.06 -52.48 -0.42 1.88 16 43 H 0.10 2.44 6.45 -52.48 -0.34 2.10 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -31.54 370.31 -8.64 -40.19 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.88 Total: 8.60 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -2.96 Total: -13.08 kcal Atomic # 7 Polarization: -30.42 SS G_CDS: 0.60 Total: -29.82 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.94 Total: -24.47 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.04 Total: 13.01 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.54 -8.64 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789226529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.792 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds