Wall clock time and date at job start Tue Mar 31 2020 11:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33082 * 119.99721 * 2 1 4 4 C 1.50699 * 120.00358 * 359.97438 * 3 2 1 5 5 C 1.52994 * 109.47047 * 95.00237 * 4 3 2 6 6 C 1.46955 * 119.99508 * 179.97438 * 3 2 1 7 7 O 1.21534 * 120.00539 * 359.97438 * 6 3 2 8 8 O 1.34806 * 119.99722 * 179.97438 * 6 3 2 9 9 C 1.45203 * 116.99917 * 180.02562 * 8 6 3 10 10 C 1.50697 * 109.46873 * 179.97438 * 9 8 6 11 11 O 1.21280 * 120.00282 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99547 * 179.97438 * 10 9 8 13 13 C 1.39234 * 119.99559 * 176.69844 * 12 10 9 14 14 C 1.39485 * 119.83300 * 217.48439 * 13 12 10 15 15 C 1.36374 * 120.16805 * 179.75881 * 14 13 12 16 16 C 1.40871 * 119.83024 * 0.52330 * 15 14 13 17 17 C 1.41149 * 120.16324 * 179.71904 * 16 15 14 18 18 H 1.08002 * 120.00006 * 157.97019 * 17 16 15 19 19 C 1.39900 * 120.00004 * 337.95999 * 17 16 15 20 20 N 1.30873 * 120.00660 * 327.61824 * 19 17 16 21 21 Si 1.86811 * 119.99813 * 147.61749 * 19 17 16 22 22 H 1.48497 * 109.47135 * 94.98996 * 21 19 17 23 23 H 1.48501 * 109.47033 * 214.98986 * 21 19 17 24 24 H 1.48503 * 109.46834 * 334.98783 * 21 19 17 25 25 C 1.40864 * 119.66830 * 359.73295 * 16 15 14 26 26 C 1.36377 * 119.83081 * 0.02562 * 25 16 15 27 27 H 1.09005 * 109.47211 * 300.00287 * 1 2 3 28 28 H 1.09001 * 109.47092 * 60.00107 * 1 2 3 29 29 H 1.08997 * 109.47064 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.00080 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.46890 * 214.99906 * 4 3 2 32 32 H 1.08995 * 109.46825 * 334.99612 * 4 3 2 33 33 H 1.08996 * 109.47282 * 299.99902 * 5 4 3 34 34 H 1.09003 * 109.47294 * 60.00326 * 5 4 3 35 35 H 1.08999 * 109.47131 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.46876 * 300.00462 * 9 8 6 37 37 H 1.08999 * 109.46861 * 59.99434 * 9 8 6 38 38 H 0.96995 * 120.00374 * 356.70787 * 12 10 9 39 39 H 1.08001 * 119.91187 * 0.02816 * 14 13 12 40 40 H 1.08003 * 120.08733 * 180.25268 * 15 14 13 41 41 H 0.97000 * 120.00308 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.08572 * 179.97438 * 25 16 15 43 43 H 1.08003 * 119.91312 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1526 0.0000 4 6 1.4189 2.4577 -0.0006 5 6 1.2723 2.9625 1.4362 6 6 3.6419 1.1525 0.0006 7 8 4.2496 0.1000 0.0015 8 8 4.3159 2.3200 0.0000 9 6 5.7660 2.2440 0.0001 10 6 6.3419 3.6365 -0.0012 11 8 5.6031 4.5983 -0.0025 12 7 7.6781 3.8131 -0.0008 13 6 8.2105 5.0977 -0.0715 14 6 9.3689 5.3289 -0.8133 15 6 9.8935 6.5853 -0.8912 16 6 9.2687 7.6489 -0.2109 17 6 9.8090 8.9510 -0.2818 18 1 9.1819 9.8074 -0.0826 19 6 11.1569 9.1321 -0.6098 20 7 12.0438 8.2399 -0.2492 21 14 11.6907 10.6476 -1.5628 22 1 12.1476 11.6939 -0.6132 23 1 12.8039 10.2899 -2.4783 24 1 10.5451 11.1635 -2.3543 25 6 8.1022 7.4065 0.5407 26 6 7.5865 6.1456 0.6051 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.0470 -0.9353 0.0004 31 1 1.9665 3.1931 -0.5900 32 1 0.4309 2.3065 -0.4353 33 1 0.7247 2.2271 2.0256 34 1 2.2604 3.1137 1.8708 35 1 0.7269 3.9062 1.4358 36 1 6.1019 1.7121 0.8903 37 1 6.1018 1.7113 -0.8896 38 1 8.2688 3.0453 0.0484 39 1 9.8490 4.5116 -1.3310 40 1 10.7881 6.7636 -1.4693 41 1 12.9783 8.3653 -0.4770 42 1 7.6179 8.2169 1.0653 43 1 6.6925 5.9582 1.1813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789226529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:13 Heat of formation + Delta-G solvation = -110.774708 kcal Electronic energy + Delta-G solvation = -25090.211976 eV Core-core repulsion = 21292.655610 eV Total energy + Delta-G solvation = -3797.556366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.81136 -41.00262 -39.11656 -37.86336 -37.09494 -36.21683 -34.87188 -32.26055 -31.60948 -31.36502 -30.00262 -28.63581 -26.57785 -24.18205 -23.91892 -23.30505 -22.55851 -21.41522 -19.86811 -19.31366 -18.83009 -18.38502 -17.81803 -17.71859 -17.44741 -17.01344 -16.20999 -15.81973 -15.66713 -15.27235 -15.03142 -14.68625 -14.48044 -14.16606 -14.02088 -13.97124 -13.90588 -13.81508 -13.45733 -13.33653 -13.14367 -12.95707 -12.85460 -12.70262 -12.34749 -12.12176 -11.95122 -11.92854 -11.79783 -11.61793 -11.48200 -11.18948 -10.82807 -10.52234 -10.15783 -9.50473 -9.05470 -8.75690 -6.25770 0.04796 0.76266 1.11697 1.24323 1.35281 1.40545 1.53226 1.68414 1.81567 2.19060 2.43442 2.62174 3.54674 3.63106 3.70583 3.80783 3.98129 4.00964 4.16482 4.30616 4.37399 4.46130 4.49534 4.58170 4.70871 4.81800 4.87725 4.99530 5.08202 5.10018 5.12165 5.13931 5.22877 5.24365 5.33261 5.39729 5.44509 5.57544 5.61786 5.83398 5.98886 6.05554 6.32663 6.52534 6.59616 6.65422 6.86971 6.95513 7.28335 8.18491 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033201 B = 0.002158 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.145267 B =12972.242723 C =13510.979183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.032 4.032 3 C -0.193 4.193 4 C -0.080 4.080 5 C -0.145 4.145 6 C 0.501 3.499 7 O -0.538 6.538 8 O -0.341 6.341 9 C 0.059 3.941 10 C 0.501 3.499 11 O -0.557 6.557 12 N -0.634 5.634 13 C -0.012 4.012 14 C -0.096 4.096 15 C -0.190 4.190 16 C 0.084 3.916 17 C -0.503 4.503 18 H 0.076 0.924 19 C 0.052 3.948 20 N -0.796 5.796 21 Si 0.972 3.028 22 H -0.259 1.259 23 H -0.260 1.260 24 H -0.262 1.262 25 C -0.246 4.246 26 C -0.075 4.075 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.126 0.874 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.066 0.934 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.419 0.581 39 H 0.126 0.874 40 H 0.100 0.900 41 H 0.295 0.705 42 H 0.092 0.908 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.078 -16.086 -0.584 22.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.050 4.050 3 C -0.194 4.194 4 C -0.117 4.117 5 C -0.202 4.202 6 C 0.349 3.651 7 O -0.431 6.431 8 O -0.257 6.257 9 C -0.018 4.018 10 C 0.288 3.712 11 O -0.435 6.435 12 N -0.280 5.280 13 C -0.105 4.105 14 C -0.116 4.116 15 C -0.210 4.210 16 C 0.082 3.918 17 C -0.530 4.530 18 H 0.094 0.906 19 C -0.168 4.168 20 N -0.419 5.419 21 Si 0.792 3.208 22 H -0.184 1.184 23 H -0.184 1.184 24 H -0.186 1.186 25 C -0.266 4.266 26 C -0.095 4.095 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.143 0.857 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.257 0.743 39 H 0.144 0.856 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.156 -15.793 -0.558 22.599 hybrid contribution 1.212 0.432 -0.121 1.292 sum -14.944 -15.361 -0.679 21.442 Atomic orbital electron populations 1.21168 0.88648 1.04950 1.04178 1.24037 0.98607 0.96290 0.86116 1.20798 0.87254 0.98842 1.12477 1.20510 1.00451 0.92365 0.98398 1.21685 1.01156 1.01659 0.95677 1.22015 0.90586 0.80689 0.71764 1.90819 1.70936 1.33031 1.48292 1.86664 1.20520 1.34525 1.83942 1.22698 0.78105 0.93958 1.07077 1.20589 0.82666 0.90983 0.77000 1.90721 1.59734 1.43427 1.49596 1.42587 1.05858 1.07571 1.72025 1.17050 0.99741 0.84936 1.08745 1.20446 0.95847 0.97008 0.98283 1.20660 1.02383 0.92985 1.04954 1.17926 0.91183 0.93852 0.88872 1.19723 0.95637 0.93452 1.44175 0.90630 1.26736 0.95769 1.01061 0.93236 1.69934 1.03886 1.36666 1.31449 0.85365 0.78671 0.77778 0.79002 1.18390 1.18432 1.18561 1.20722 1.02217 0.96227 1.07407 1.20413 0.98192 0.93002 0.97883 0.89065 0.88864 0.89324 0.85652 0.92362 0.87753 0.91133 0.94856 0.91532 0.85913 0.85883 0.74294 0.85601 0.88202 0.89389 0.88934 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 8.84 71.24 0.63 -0.19 16 2 C -0.03 -0.43 9.84 24.53 0.24 -0.19 16 3 C -0.19 -3.71 5.25 -18.74 -0.10 -3.81 16 4 C -0.08 -1.40 5.46 29.85 0.16 -1.23 16 5 C -0.14 -2.53 9.89 71.98 0.71 -1.82 16 6 C 0.50 12.99 7.88 70.11 0.55 13.54 16 7 O -0.54 -15.26 16.01 19.72 0.32 -14.95 16 8 O -0.34 -9.98 9.11 -50.79 -0.46 -10.44 16 9 C 0.06 1.50 5.96 71.23 0.42 1.92 16 10 C 0.50 17.26 7.72 87.66 0.68 17.93 16 11 O -0.56 -24.75 14.12 15.77 0.22 -24.52 16 12 N -0.63 -21.20 5.30 -303.11 -1.61 -22.80 16 13 C -0.01 -0.52 6.25 38.57 0.24 -0.28 16 14 C -0.10 -4.28 9.90 22.14 0.22 -4.06 16 15 C -0.19 -9.81 8.74 22.48 0.20 -9.61 16 16 C 0.08 4.66 5.57 -21.28 -0.12 4.55 16 17 C -0.50 -27.41 8.94 23.39 0.21 -27.20 16 18 H 0.08 4.05 8.02 -2.91 -0.02 4.03 16 19 C 0.05 2.57 4.77 85.24 0.41 2.98 16 20 N -0.80 -40.22 11.78 21.82 0.26 -39.97 16 21 Si 0.97 37.23 29.66 68.60 2.03 39.27 16 22 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 23 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 24 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 25 C -0.25 -13.08 9.74 22.48 0.22 -12.87 16 26 C -0.07 -3.71 8.59 22.13 0.19 -3.52 16 27 H 0.09 0.45 7.82 -2.38 -0.02 0.43 16 28 H 0.09 0.43 7.42 -2.39 -0.02 0.41 16 29 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.13 1.78 7.49 -2.91 -0.02 1.76 16 31 H 0.06 1.31 7.83 -2.39 -0.02 1.29 16 32 H 0.10 1.17 6.32 -2.39 -0.02 1.16 16 33 H 0.07 0.93 7.86 -2.39 -0.02 0.91 16 34 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.42 10.18 8.82 -92.71 -0.82 9.37 16 39 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 40 H 0.10 5.22 6.52 -2.91 -0.02 5.20 16 41 H 0.30 13.19 8.30 -92.71 -0.77 12.42 16 42 H 0.09 4.78 8.06 -2.91 -0.02 4.75 16 43 H 0.10 4.96 6.45 -2.91 -0.02 4.94 16 Total: -1.00 -71.51 370.31 5.84 -65.67 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.22 Total: 31.59 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 4.86 Total: -23.85 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -1.35 Total: -62.77 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: 0.08 Total: -49.91 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.27 kcal Total: -71.51 5.84 -65.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789226529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.108 kcal (2) G-P(sol) polarization free energy of solvation -71.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds