Wall clock time and date at job start Tue Mar 31 2020 11:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33075 * 120.00314 * 2 1 4 4 C 1.50697 * 119.99822 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47324 * 95.00514 * 4 3 2 6 6 C 1.46947 * 120.00268 * 179.97438 * 3 2 1 7 7 O 1.21539 * 120.00424 * 0.02562 * 6 3 2 8 8 O 1.34798 * 120.00325 * 179.97438 * 6 3 2 9 9 C 1.45205 * 117.00426 * 180.02562 * 8 6 3 10 10 C 1.50699 * 109.47242 * 180.02562 * 9 8 6 11 11 O 1.21283 * 120.00140 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00237 * 180.02562 * 10 9 8 13 13 C 1.37146 * 119.99430 * 354.95104 * 12 10 9 14 14 H 1.07994 * 120.00084 * 344.73797 * 13 12 10 15 15 C 1.38889 * 119.99765 * 164.74293 * 13 12 10 16 16 N 1.31427 * 119.99868 * 343.62005 * 15 13 12 17 17 Si 1.86797 * 120.00036 * 163.62485 * 15 13 12 18 18 H 1.48496 * 109.47474 * 90.00091 * 17 15 13 19 19 H 1.48504 * 109.46751 * 210.00026 * 17 15 13 20 20 H 1.48499 * 109.47045 * 329.99401 * 17 15 13 21 21 C 1.39785 * 120.00221 * 174.95148 * 12 10 9 22 22 C 1.38956 * 120.07802 * 101.20892 * 21 12 10 23 23 C 1.38082 * 119.92374 * 179.79142 * 22 21 12 24 24 C 1.38310 * 120.07703 * 0.46155 * 23 22 21 25 25 C 1.38310 * 120.15411 * 359.78898 * 24 23 22 26 26 C 1.38081 * 120.07944 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47302 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47070 * 300.00220 * 1 2 3 29 29 H 1.09003 * 109.46785 * 60.00281 * 1 2 3 30 30 H 1.08008 * 119.99619 * 179.97438 * 2 1 3 31 31 H 1.09007 * 109.47024 * 215.00093 * 4 3 2 32 32 H 1.09004 * 109.47564 * 334.99898 * 4 3 2 33 33 H 1.08999 * 109.47197 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.46638 * 299.99231 * 5 4 3 35 35 H 1.08997 * 109.47309 * 59.99582 * 5 4 3 36 36 H 1.09000 * 109.46445 * 299.99761 * 9 8 6 37 37 H 1.09000 * 109.47188 * 59.99937 * 9 8 6 38 38 H 0.97002 * 119.99618 * 185.01749 * 16 15 13 39 39 H 1.08010 * 120.03861 * 359.97438 * 22 21 12 40 40 H 1.07995 * 119.96269 * 180.25605 * 23 22 21 41 41 H 1.07997 * 119.92289 * 179.76879 * 24 23 22 42 42 H 1.07996 * 119.96290 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.04487 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1524 0.0000 4 6 1.4190 2.4575 -0.0006 5 6 1.2724 2.9625 1.4362 6 6 3.6419 1.1524 0.0006 7 8 4.2497 0.0999 0.0006 8 8 4.3160 2.3198 0.0000 9 6 5.7660 2.2438 0.0001 10 6 6.3421 3.6363 0.0001 11 8 5.6033 4.5982 -0.0004 12 7 7.6782 3.8130 -0.0004 13 6 8.5130 2.7298 0.1036 14 1 8.1231 1.7769 0.4297 15 6 9.8598 2.8585 -0.2103 16 7 10.2773 3.8953 -0.9017 17 14 11.0778 1.5578 0.3500 18 1 11.1911 0.5045 -0.6906 19 1 12.4065 2.1846 0.5667 20 1 10.6042 0.9504 1.6197 21 6 8.2131 5.1000 -0.1069 22 6 8.6823 5.7551 1.0252 23 6 9.2140 7.0247 0.9156 24 6 9.2711 7.6483 -0.3176 25 6 8.8001 7.0013 -1.4457 26 6 8.2716 5.7297 -1.3443 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 2.0470 -0.9354 0.0004 31 1 1.9666 3.1930 -0.5900 32 1 0.4308 2.3065 -0.4353 33 1 0.7270 3.9062 1.4358 34 1 0.7247 2.2271 2.0256 35 1 2.2605 3.1136 1.8708 36 1 6.1019 1.7121 0.8904 37 1 6.1020 1.7112 -0.8897 38 1 11.2039 3.9490 -1.1835 39 1 8.6340 5.2705 1.9893 40 1 9.5827 7.5327 1.7944 41 1 9.6840 8.6428 -0.3998 42 1 8.8458 7.4913 -2.4071 43 1 7.9037 5.2252 -2.2255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789234355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:34 Heat of formation + Delta-G solvation = -71.651730 kcal Electronic energy + Delta-G solvation = -26373.421624 eV Core-core repulsion = 22577.561758 eV Total energy + Delta-G solvation = -3795.859867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.23528 -39.31517 -37.41689 -36.52911 -35.76029 -34.76338 -31.76847 -31.40007 -29.91290 -29.72374 -28.36897 -27.05421 -25.02117 -23.27582 -22.63536 -21.56653 -21.36936 -19.39759 -18.56591 -17.95819 -17.18278 -16.49959 -16.15814 -15.93088 -15.50740 -14.81146 -14.63853 -14.41757 -14.34184 -13.90391 -13.61298 -13.44149 -13.23924 -13.06727 -12.62684 -12.49362 -12.46153 -12.18510 -12.15364 -12.01151 -11.62900 -11.52973 -11.18896 -11.07219 -10.98945 -10.88451 -10.56769 -10.41182 -10.35365 -10.22012 -10.18679 -9.48899 -9.21763 -8.68560 -8.21931 -7.89478 -7.61544 -6.33240 -4.12420 1.15232 2.41252 2.48430 2.86019 3.03974 3.08231 3.15919 3.18591 3.59478 3.97291 4.43632 4.72093 4.80799 4.90238 4.98848 5.01175 5.08327 5.28789 5.42525 5.45006 5.56385 5.66838 5.74271 5.77285 5.79366 5.87031 5.91508 5.97596 6.00101 6.00615 6.23579 6.35594 6.38922 6.46965 6.53710 6.72771 6.77915 7.01691 7.22375 7.30469 7.42846 7.54359 7.71431 7.92020 8.00801 8.34159 8.89013 9.21598 9.64588 10.51353 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.003766 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.935392 B = 7433.590860 C = 8860.452543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 C -0.154 4.154 4 C -0.086 4.086 5 C -0.145 4.145 6 C 0.498 3.502 7 O -0.518 6.518 8 O -0.326 6.326 9 C 0.072 3.928 10 C 0.465 3.535 11 O -0.575 6.575 12 N -0.407 5.407 13 C -0.363 4.363 14 H 0.103 0.897 15 C 0.049 3.951 16 N -0.843 5.843 17 Si 0.921 3.079 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.267 1.267 21 C 0.238 3.762 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.144 4.144 25 C -0.121 4.121 26 C -0.066 4.066 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.274 0.726 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.510 -2.405 1.357 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 C -0.155 4.155 4 C -0.123 4.123 5 C -0.202 4.202 6 C 0.344 3.656 7 O -0.409 6.409 8 O -0.240 6.240 9 C -0.004 4.004 10 C 0.253 3.747 11 O -0.459 6.459 12 N -0.125 5.125 13 C -0.489 4.489 14 H 0.121 0.879 15 C -0.160 4.160 16 N -0.477 5.477 17 Si 0.747 3.253 18 H -0.201 1.201 19 H -0.205 1.205 20 H -0.192 1.192 21 C 0.148 3.852 22 C -0.141 4.141 23 C -0.141 4.141 24 C -0.162 4.162 25 C -0.140 4.140 26 C -0.085 4.085 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.146 0.854 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.445 -2.100 1.328 11.711 hybrid contribution 1.320 -1.007 0.142 1.666 sum -10.125 -3.107 1.470 10.693 Atomic orbital electron populations 1.20992 0.91567 1.03043 1.02961 1.23643 0.96592 0.97490 0.91389 1.20802 0.89332 0.97375 1.08010 1.20544 0.99373 0.93687 0.98686 1.21679 1.02534 1.00481 0.95518 1.21383 0.89387 0.81927 0.72950 1.90834 1.70434 1.32919 1.46681 1.86595 1.21637 1.32752 1.83043 1.22627 0.75665 0.97814 1.04336 1.19493 0.82379 0.89371 0.83430 1.90615 1.58675 1.41641 1.54965 1.41182 1.03447 1.04773 1.63071 1.19623 0.90028 0.90566 1.48659 0.87897 1.25268 0.98059 0.97544 0.95096 1.69940 1.17822 1.28508 1.31452 0.86015 0.79704 0.80073 0.79547 1.20075 1.20515 1.19192 1.17042 0.92189 0.83579 0.92357 1.20982 1.00531 0.94838 0.97763 1.20662 1.01364 0.95194 0.96927 1.20752 1.02972 0.99342 0.93157 1.20684 1.00603 0.95180 0.97539 1.20805 0.97538 0.93973 0.96210 0.91307 0.90450 0.90375 0.85442 0.89737 0.90779 0.92198 0.93152 0.91914 0.89181 0.88656 0.91499 0.87429 0.87532 0.87698 0.87501 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 8.84 36.01 0.32 -0.60 16 2 C -0.07 -0.78 9.84 -36.10 -0.36 -1.14 16 3 C -0.15 -2.07 5.25 -102.89 -0.54 -2.61 16 4 C -0.09 -1.01 5.46 -27.88 -0.15 -1.16 16 5 C -0.14 -1.64 9.89 37.16 0.37 -1.28 16 6 C 0.50 8.78 7.88 34.26 0.27 9.05 16 7 O -0.52 -10.06 16.01 -19.30 -0.31 -10.37 16 8 O -0.33 -6.49 9.11 -47.44 -0.43 -6.92 16 9 C 0.07 1.52 4.50 36.00 0.16 1.68 16 10 C 0.46 11.37 7.66 -10.99 -0.08 11.29 16 11 O -0.58 -15.39 16.48 -14.10 -0.23 -15.62 16 12 N -0.41 -10.22 2.66 -58.98 -0.16 -10.38 16 13 C -0.36 -9.00 9.19 -14.93 -0.14 -9.13 16 14 H 0.10 2.40 6.46 -52.49 -0.34 2.06 16 15 C 0.05 1.20 5.24 -17.48 -0.09 1.11 16 16 N -0.84 -21.40 10.34 55.49 0.57 -20.83 16 17 Si 0.92 19.22 29.59 -169.99 -5.03 14.19 16 18 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 C 0.24 5.91 2.29 -83.70 -0.19 5.72 16 22 C -0.12 -2.80 9.95 -39.37 -0.39 -3.20 16 23 C -0.12 -2.47 10.04 -39.61 -0.40 -2.87 16 24 C -0.14 -2.77 10.04 -39.53 -0.40 -3.16 16 25 C -0.12 -2.48 10.04 -39.61 -0.40 -2.88 16 26 C -0.07 -1.55 8.66 -39.37 -0.34 -1.90 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.50 7.82 -51.93 -0.41 0.10 16 29 H 0.08 0.50 7.42 -51.93 -0.39 0.11 16 30 H 0.13 1.43 7.49 -52.48 -0.39 1.04 16 31 H 0.08 1.16 7.83 -51.92 -0.41 0.75 16 32 H 0.07 0.67 6.32 -51.93 -0.33 0.34 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.48 7.86 -51.93 -0.41 0.08 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.81 7.52 -51.93 -0.39 1.42 16 37 H 0.10 1.96 8.13 -51.93 -0.42 1.54 16 38 H 0.27 6.69 8.32 -40.82 -0.34 6.35 16 39 H 0.11 2.42 8.06 -52.48 -0.42 2.00 16 40 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 41 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 43 H 0.11 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -30.45 370.17 -8.36 -38.81 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.00 Total: 6.62 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.36 Total: -1.08 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 0.42 Total: -31.21 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.97 Total: -32.91 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.45 -8.36 -38.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789234355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.839 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds