Wall clock time and date at job start Tue Mar 31 2020 11:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33075 * 120.00314 * 2 1 4 4 C 1.50697 * 119.99822 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47324 * 95.00514 * 4 3 2 6 6 C 1.46947 * 120.00268 * 179.97438 * 3 2 1 7 7 O 1.21539 * 120.00424 * 0.02562 * 6 3 2 8 8 O 1.34798 * 120.00325 * 179.97438 * 6 3 2 9 9 C 1.45205 * 117.00426 * 180.02562 * 8 6 3 10 10 C 1.50699 * 109.47242 * 180.02562 * 9 8 6 11 11 O 1.21283 * 120.00140 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00237 * 180.02562 * 10 9 8 13 13 C 1.37146 * 119.99430 * 354.95104 * 12 10 9 14 14 H 1.07994 * 120.00084 * 344.73797 * 13 12 10 15 15 C 1.38889 * 119.99765 * 164.74293 * 13 12 10 16 16 N 1.31427 * 119.99868 * 343.62005 * 15 13 12 17 17 Si 1.86797 * 120.00036 * 163.62485 * 15 13 12 18 18 H 1.48496 * 109.47474 * 90.00091 * 17 15 13 19 19 H 1.48504 * 109.46751 * 210.00026 * 17 15 13 20 20 H 1.48499 * 109.47045 * 329.99401 * 17 15 13 21 21 C 1.39785 * 120.00221 * 174.95148 * 12 10 9 22 22 C 1.38956 * 120.07802 * 101.20892 * 21 12 10 23 23 C 1.38082 * 119.92374 * 179.79142 * 22 21 12 24 24 C 1.38310 * 120.07703 * 0.46155 * 23 22 21 25 25 C 1.38310 * 120.15411 * 359.78898 * 24 23 22 26 26 C 1.38081 * 120.07944 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47302 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47070 * 300.00220 * 1 2 3 29 29 H 1.09003 * 109.46785 * 60.00281 * 1 2 3 30 30 H 1.08008 * 119.99619 * 179.97438 * 2 1 3 31 31 H 1.09007 * 109.47024 * 215.00093 * 4 3 2 32 32 H 1.09004 * 109.47564 * 334.99898 * 4 3 2 33 33 H 1.08999 * 109.47197 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.46638 * 299.99231 * 5 4 3 35 35 H 1.08997 * 109.47309 * 59.99582 * 5 4 3 36 36 H 1.09000 * 109.46445 * 299.99761 * 9 8 6 37 37 H 1.09000 * 109.47188 * 59.99937 * 9 8 6 38 38 H 0.97002 * 119.99618 * 185.01749 * 16 15 13 39 39 H 1.08010 * 120.03861 * 359.97438 * 22 21 12 40 40 H 1.07995 * 119.96269 * 180.25605 * 23 22 21 41 41 H 1.07997 * 119.92289 * 179.76879 * 24 23 22 42 42 H 1.07996 * 119.96290 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.04487 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1524 0.0000 4 6 1.4190 2.4575 -0.0006 5 6 1.2724 2.9625 1.4362 6 6 3.6419 1.1524 0.0006 7 8 4.2497 0.0999 0.0006 8 8 4.3160 2.3198 0.0000 9 6 5.7660 2.2438 0.0001 10 6 6.3421 3.6363 0.0001 11 8 5.6033 4.5982 -0.0004 12 7 7.6782 3.8130 -0.0004 13 6 8.5130 2.7298 0.1036 14 1 8.1231 1.7769 0.4297 15 6 9.8598 2.8585 -0.2103 16 7 10.2773 3.8953 -0.9017 17 14 11.0778 1.5578 0.3500 18 1 11.1911 0.5045 -0.6906 19 1 12.4065 2.1846 0.5667 20 1 10.6042 0.9504 1.6197 21 6 8.2131 5.1000 -0.1069 22 6 8.6823 5.7551 1.0252 23 6 9.2140 7.0247 0.9156 24 6 9.2711 7.6483 -0.3176 25 6 8.8001 7.0013 -1.4457 26 6 8.2716 5.7297 -1.3443 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 2.0470 -0.9354 0.0004 31 1 1.9666 3.1930 -0.5900 32 1 0.4308 2.3065 -0.4353 33 1 0.7270 3.9062 1.4358 34 1 0.7247 2.2271 2.0256 35 1 2.2605 3.1136 1.8708 36 1 6.1019 1.7121 0.8904 37 1 6.1020 1.7112 -0.8897 38 1 11.2039 3.9490 -1.1835 39 1 8.6340 5.2705 1.9893 40 1 9.5827 7.5327 1.7944 41 1 9.6840 8.6428 -0.3998 42 1 8.8458 7.4913 -2.4071 43 1 7.9037 5.2252 -2.2255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789234355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:33 Heat of formation + Delta-G solvation = -85.892630 kcal Electronic energy + Delta-G solvation = -26374.039156 eV Core-core repulsion = 22577.561758 eV Total energy + Delta-G solvation = -3796.477399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.74669 -41.05155 -39.09159 -37.79441 -37.08400 -36.63929 -33.68203 -32.24556 -31.59068 -31.40576 -29.65115 -28.38623 -26.92068 -24.17734 -24.03246 -23.24698 -22.93804 -21.26619 -19.87285 -19.67932 -18.43384 -17.98159 -17.73124 -17.51855 -17.25843 -16.58285 -16.31594 -16.06962 -15.58220 -15.25746 -15.09620 -14.64617 -14.60982 -14.13024 -14.02470 -13.99851 -13.78631 -13.49446 -13.38748 -13.26453 -13.12703 -12.94582 -12.89086 -12.75398 -12.26434 -12.12054 -12.08459 -12.02921 -11.87199 -11.78217 -11.45794 -11.30995 -10.61685 -10.15005 -10.08839 -9.59314 -9.37072 -8.18709 -6.06772 0.06378 0.73213 0.79027 1.31676 1.39577 1.45993 1.54712 1.72691 1.83745 2.23519 2.80799 3.00566 3.20537 3.61681 3.81565 3.92808 4.07446 4.14493 4.17351 4.22886 4.27599 4.32353 4.38278 4.50759 4.58941 4.72473 4.73425 4.83513 4.88454 5.02043 5.05155 5.10344 5.15821 5.27621 5.33327 5.34132 5.35189 5.44930 5.60113 5.60428 5.75090 5.78204 5.97429 6.19398 6.48246 6.61779 6.97035 7.32270 7.75084 8.63061 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.003766 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.935392 B = 7433.590860 C = 8860.452543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.034 4.034 3 C -0.190 4.190 4 C -0.079 4.079 5 C -0.143 4.143 6 C 0.492 3.508 7 O -0.545 6.545 8 O -0.339 6.339 9 C 0.084 3.916 10 C 0.451 3.549 11 O -0.609 6.609 12 N -0.411 5.411 13 C -0.384 4.384 14 H 0.110 0.890 15 C 0.013 3.987 16 N -0.860 5.860 17 Si 0.986 3.014 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.263 1.263 21 C 0.208 3.792 22 C -0.148 4.148 23 C -0.119 4.119 24 C -0.137 4.137 25 C -0.120 4.120 26 C -0.094 4.094 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.122 0.878 31 H 0.055 0.945 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.027 0.973 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.274 0.726 39 H 0.100 0.900 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.137 0.863 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.250 -2.451 1.713 12.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.052 4.052 3 C -0.191 4.191 4 C -0.116 4.116 5 C -0.201 4.201 6 C 0.340 3.660 7 O -0.438 6.438 8 O -0.255 6.255 9 C 0.007 3.993 10 C 0.241 3.759 11 O -0.496 6.496 12 N -0.128 5.128 13 C -0.509 4.509 14 H 0.127 0.873 15 C -0.194 4.194 16 N -0.495 5.495 17 Si 0.809 3.191 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.187 1.187 21 C 0.118 3.882 22 C -0.168 4.168 23 C -0.137 4.137 24 C -0.155 4.155 25 C -0.138 4.138 26 C -0.114 4.114 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.140 0.860 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.160 0.840 41 H 0.168 0.832 42 H 0.155 0.845 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.189 -2.147 1.681 12.491 hybrid contribution 1.507 -0.999 0.005 1.808 sum -10.682 -3.146 1.686 11.263 Atomic orbital electron populations 1.21159 0.88058 1.05022 1.04316 1.24052 0.98871 0.96047 0.86262 1.20826 0.86642 0.99257 1.12410 1.20521 1.00401 0.92075 0.98580 1.21682 1.00971 1.01858 0.95547 1.22299 0.91048 0.80800 0.71837 1.90800 1.71272 1.33312 1.48453 1.86621 1.20741 1.34515 1.83590 1.22345 0.76854 0.95657 1.04418 1.20008 0.82318 0.90320 0.83266 1.90559 1.59327 1.42901 1.56773 1.41412 1.03722 1.05446 1.62194 1.19970 0.90633 0.90990 1.49352 0.87276 1.26062 0.99148 0.99503 0.94687 1.70092 1.17915 1.29793 1.31676 0.85036 0.77207 0.77686 0.79177 1.19548 1.20381 1.18741 1.17390 0.93555 0.83844 0.93444 1.21143 1.02080 0.96530 0.97018 1.21107 0.99742 0.93946 0.98905 1.21248 1.01352 1.00871 0.91997 1.21084 0.99090 0.93942 0.99700 1.20839 0.99565 0.95725 0.95227 0.89234 0.88852 0.88669 0.86045 0.92653 0.87180 0.91029 0.90902 0.95398 0.88661 0.88717 0.91581 0.88150 0.83965 0.83191 0.84470 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 8.84 71.24 0.63 -0.69 16 2 C -0.03 -0.66 9.84 24.53 0.24 -0.42 16 3 C -0.19 -5.05 5.25 -18.74 -0.10 -5.15 16 4 C -0.08 -1.81 5.46 29.85 0.16 -1.64 16 5 C -0.14 -3.19 9.89 71.98 0.71 -2.47 16 6 C 0.49 18.11 7.88 70.10 0.55 18.67 16 7 O -0.55 -22.00 16.01 19.71 0.32 -21.68 16 8 O -0.34 -14.46 9.11 -50.70 -0.46 -14.92 16 9 C 0.08 3.78 4.50 71.24 0.32 4.10 16 10 C 0.45 23.52 7.66 87.66 0.67 24.19 16 11 O -0.61 -34.72 16.48 15.76 0.26 -34.46 16 12 N -0.41 -21.72 2.66 -458.90 -1.22 -22.94 16 13 C -0.38 -19.73 9.19 84.02 0.77 -18.96 16 14 H 0.11 5.28 6.46 -2.91 -0.02 5.26 16 15 C 0.01 0.63 5.24 84.91 0.44 1.08 16 16 N -0.86 -44.38 10.34 21.65 0.22 -44.16 16 17 Si 0.99 39.62 29.59 68.60 2.03 41.65 16 18 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 19 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 21 C 0.21 10.66 2.29 38.22 0.09 10.75 16 22 C -0.15 -6.96 9.95 22.40 0.22 -6.74 16 23 C -0.12 -4.58 10.04 22.25 0.22 -4.36 16 24 C -0.14 -4.90 10.04 22.30 0.22 -4.67 16 25 C -0.12 -4.78 10.04 22.25 0.22 -4.56 16 26 C -0.09 -4.58 8.66 22.41 0.19 -4.39 16 27 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.09 0.78 7.82 -2.39 -0.02 0.76 16 29 H 0.09 0.77 7.42 -2.39 -0.02 0.76 16 30 H 0.12 2.55 7.49 -2.91 -0.02 2.53 16 31 H 0.05 1.58 7.83 -2.38 -0.02 1.56 16 32 H 0.11 1.68 6.32 -2.38 -0.02 1.66 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.26 7.86 -2.38 -0.02 1.24 16 35 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 4.09 7.52 -2.39 -0.02 4.07 16 37 H 0.09 4.18 8.13 -2.39 -0.02 4.16 16 38 H 0.27 13.45 8.32 -92.71 -0.77 12.68 16 39 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 42 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 43 H 0.08 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -70.16 370.17 7.74 -62.42 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 1.01 Total: 29.37 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 5.58 Total: 4.73 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -1.00 Total: -67.10 kcal Atomic # 8 Polarization: -71.18 SS G_CDS: 0.11 Total: -71.06 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -70.16 7.74 -62.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789234355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.477 kcal (2) G-P(sol) polarization free energy of solvation -70.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds