Wall clock time and date at job start Tue Mar 31 2020 11:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47672 * 2 1 4 4 C 1.53003 * 109.46695 * 240.00108 * 2 1 3 5 5 C 1.50700 * 109.46991 * 60.00318 * 4 2 1 6 6 H 1.07994 * 120.00406 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99726 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00430 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99711 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47133 * 89.99780 * 9 7 5 11 11 H 1.48502 * 109.46922 * 209.99711 * 9 7 5 12 12 H 1.48498 * 109.47290 * 329.99396 * 9 7 5 13 13 C 1.52999 * 109.47232 * 120.00474 * 2 1 3 14 14 O 1.45195 * 109.47190 * 299.99640 * 13 2 1 15 15 C 1.34223 * 117.00254 * 180.02562 * 14 13 2 16 16 O 1.20823 * 120.00098 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99965 * 180.02562 * 15 14 13 18 18 O 1.42901 * 109.47180 * 179.97438 * 17 15 14 19 19 C 1.35909 * 117.00415 * 179.97438 * 18 17 15 20 20 C 1.38863 * 119.97653 * 359.97360 * 19 18 17 21 21 C 1.38247 * 120.24834 * 179.97438 * 20 19 18 22 22 C 1.38000 * 120.21402 * 0.05140 * 21 20 19 23 23 C 1.39622 * 119.95718 * 359.97183 * 22 21 20 24 24 C 1.43198 * 120.12627 * 179.97438 * 23 22 21 25 25 N 9.49535 * 152.68916 * 197.95933 * 14 1 2 26 26 C 1.38439 * 119.98151 * 179.97438 * 19 18 17 27 27 H 1.09007 * 109.46537 * 299.99983 * 1 2 3 28 28 H 1.08997 * 109.47166 * 59.99472 * 1 2 3 29 29 H 1.08991 * 109.47281 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47219 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47386 * 300.00721 * 3 2 1 32 32 H 1.09007 * 109.46669 * 60.00103 * 3 2 1 33 33 H 1.09003 * 109.46869 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47350 * 300.00222 * 4 2 1 35 35 H 0.96996 * 120.00314 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.47358 * 179.97438 * 13 2 1 37 37 H 1.09001 * 109.47070 * 59.99620 * 13 2 1 38 38 H 1.08997 * 109.47747 * 59.99855 * 17 15 14 39 39 H 1.08997 * 109.47220 * 299.99503 * 17 15 14 40 40 H 1.07999 * 119.87572 * 0.02562 * 20 19 18 41 41 H 1.08002 * 119.89322 * 180.02562 * 21 20 19 42 42 H 1.07999 * 120.02261 * 179.97438 * 22 21 20 43 43 H 1.07991 * 120.10926 * 0.27632 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6262 -1.5514 -3.8528 9 14 1.2481 0.3990 -5.2572 10 1 2.2270 1.4399 -5.6614 11 1 1.0822 -0.5800 -6.3614 12 1 -0.0595 1.0375 -4.9612 13 6 2.0401 -0.7213 1.2492 14 8 1.5562 -0.0370 2.4348 15 6 1.9173 -0.5467 3.6227 16 8 2.6142 -1.5325 3.6704 17 6 1.4524 0.1098 4.8971 18 8 1.9634 -0.6128 6.0191 19 6 1.6353 -0.1485 7.2535 20 6 0.8374 0.9809 7.3805 21 6 0.4997 1.4578 8.6334 22 6 0.9543 0.8150 9.7668 23 6 1.7575 -0.3210 9.6493 24 6 2.2316 -0.9905 10.8230 25 7 2.6073 -1.5219 11.7542 26 6 2.0966 -0.8017 8.3835 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4423 -0.0005 31 1 1.6768 1.9564 -0.8899 32 1 1.6768 1.9562 0.8901 33 1 3.1300 -0.7217 -1.2491 34 1 1.6765 -1.7489 -1.2494 35 1 2.8604 -1.8828 -4.7338 36 1 3.1300 -0.7218 1.2490 37 1 1.6767 -1.7490 1.2491 38 1 0.3629 0.1084 4.9302 39 1 1.8156 1.1370 4.9301 40 1 0.4786 1.4882 6.4972 41 1 -0.1216 2.3364 8.7255 42 1 0.6890 1.1904 10.7441 43 1 2.7209 -1.6775 8.2861 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798877216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:10 Heat of formation + Delta-G solvation = -79.553120 kcal Electronic energy + Delta-G solvation = -24780.545897 eV Core-core repulsion = 20984.343400 eV Total energy + Delta-G solvation = -3796.202497 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00936 -40.19421 -38.42005 -37.21898 -36.58746 -35.50839 -32.40201 -31.98924 -31.12587 -29.22015 -27.24809 -26.48698 -26.32427 -24.51548 -23.20243 -22.96786 -21.15980 -19.81929 -18.40635 -17.89952 -17.09340 -17.00045 -16.86194 -16.49007 -16.24746 -15.72053 -15.54358 -14.60931 -14.56849 -14.44066 -13.98478 -13.78594 -13.67845 -13.41181 -13.14766 -12.95008 -12.90311 -12.41919 -12.38374 -12.32245 -12.10544 -11.64121 -11.59098 -11.33830 -11.02001 -10.87979 -10.66905 -10.57653 -10.41328 -10.38018 -10.26005 -9.82067 -9.60088 -9.28859 -9.00731 -8.86308 -8.41045 -6.05099 -4.06677 0.18428 0.79638 1.84436 2.11421 2.25234 2.44956 3.13920 3.28454 3.33695 3.35570 3.37483 3.51696 4.13417 4.39307 4.40589 4.47031 4.51294 4.59009 4.67492 4.76539 4.89414 5.28408 5.30304 5.38710 5.42185 5.55643 5.71280 5.72757 5.74779 5.91290 5.96114 6.10382 6.28428 6.42386 6.50119 6.63650 6.68780 6.72507 7.00627 7.03631 7.04318 7.06498 7.55254 7.66325 7.74101 7.92962 8.34091 8.97589 9.56716 11.06430 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.041327 B = 0.001886 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.367938 B =14840.420304 C =15316.120581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.059 4.059 3 C -0.127 4.127 4 C 0.035 3.965 5 C -0.511 4.511 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.081 3.919 14 O -0.346 6.346 15 C 0.457 3.543 16 O -0.488 6.488 17 C 0.067 3.933 18 O -0.290 6.290 19 C 0.134 3.866 20 C -0.180 4.180 21 C -0.077 4.077 22 C -0.108 4.108 23 C 0.011 3.989 24 C 0.256 3.744 25 N -0.410 5.410 26 C -0.100 4.100 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 8.183 23.644 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.059 4.059 3 C -0.184 4.184 4 C -0.003 4.003 5 C -0.549 4.549 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.008 3.992 14 O -0.262 6.262 15 C 0.298 3.702 16 O -0.375 6.375 17 C -0.009 4.009 18 O -0.203 6.203 19 C 0.088 3.912 20 C -0.200 4.200 21 C -0.095 4.095 22 C -0.129 4.129 23 C 0.008 3.992 24 C -0.060 4.060 25 N -0.085 5.085 26 C -0.121 4.121 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.153 0.847 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.781 6.754 24.856 26.197 hybrid contribution -0.393 0.575 -1.449 1.608 sum -5.174 7.329 23.407 25.067 Atomic orbital electron populations 1.21725 0.94729 1.01022 1.00892 1.20847 0.96239 0.96277 0.92541 1.21725 1.00108 0.95648 1.00890 1.19136 0.96440 0.95334 0.89342 1.21134 1.31368 1.12173 0.90254 0.92047 1.25020 0.95282 0.95062 0.99157 1.69959 1.36882 1.22972 1.23561 0.86605 0.79214 0.79386 0.82861 1.20721 1.21316 1.19869 1.23624 0.99192 0.96067 0.80309 1.86431 1.69510 1.55963 1.14344 1.22688 0.78671 0.83027 0.85820 1.90725 1.34188 1.24746 1.87848 1.21977 1.00817 0.96089 0.82033 1.86125 1.70466 1.52410 1.11262 1.18692 0.94885 0.93094 0.84491 1.21607 1.01267 0.97340 0.99769 1.20910 0.98265 0.99382 0.90957 1.21115 0.97556 0.94349 0.99875 1.15618 1.00684 0.96030 0.86911 1.25560 0.93809 0.93621 0.93000 1.81286 1.08275 1.08306 1.10629 1.20360 1.01992 1.01457 0.88315 0.94217 0.91456 0.93687 0.93682 0.91469 0.94206 0.96288 0.96279 0.92965 0.91281 0.91284 0.87367 0.87365 0.84207 0.84287 0.84685 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.08 37.16 0.30 -1.92 16 2 C -0.06 -1.11 0.61 -154.51 -0.09 -1.21 16 3 C -0.13 -2.22 8.08 37.16 0.30 -1.92 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.34 7.65 -34.44 -0.26 -13.60 16 6 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.08 1.38 4.32 37.16 0.16 1.54 16 14 O -0.35 -4.97 8.88 -39.24 -0.35 -5.32 16 15 C 0.46 6.09 8.03 36.01 0.29 6.38 16 16 O -0.49 -8.40 16.25 -25.47 -0.41 -8.82 16 17 C 0.07 0.55 5.33 36.01 0.19 0.74 16 18 O -0.29 -2.89 9.67 -39.41 -0.38 -3.27 16 19 C 0.13 1.01 6.68 -39.28 -0.26 0.75 16 20 C -0.18 -0.91 9.03 -39.35 -0.36 -1.26 16 21 C -0.08 -0.30 10.02 -39.67 -0.40 -0.70 16 22 C -0.11 -0.50 9.75 -39.15 -0.38 -0.88 16 23 C 0.01 0.07 5.73 -106.95 -0.61 -0.54 16 24 C 0.26 2.18 15.33 -22.47 -0.34 1.83 16 25 N -0.41 -4.50 18.54 41.84 0.78 -3.72 16 26 C -0.10 -0.74 9.69 -39.01 -0.38 -1.11 16 27 H 0.04 0.60 7.68 -51.93 -0.40 0.20 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 32 H 0.04 0.60 7.68 -51.93 -0.40 0.20 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 37 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 38 H 0.11 0.59 7.66 -51.93 -0.40 0.19 16 39 H 0.11 0.59 7.65 -51.93 -0.40 0.19 16 40 H 0.14 0.42 6.28 -52.49 -0.33 0.09 16 41 H 0.14 0.20 8.06 -52.49 -0.42 -0.23 16 42 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 43 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -32.45 372.50 -6.94 -39.39 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -5.85 Total: -4.69 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -2.06 Total: -9.76 kcal Atomic # 7 Polarization: -30.47 SS G_CDS: 1.51 Total: -28.96 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -1.14 Total: -17.41 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.45 -6.94 -39.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798877216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.163 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds