Wall clock time and date at job start Tue Mar 31 2020 11:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47672 * 2 1 4 4 C 1.53003 * 109.46695 * 240.00108 * 2 1 3 5 5 C 1.50700 * 109.46991 * 60.00318 * 4 2 1 6 6 H 1.07994 * 120.00406 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99726 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00430 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99711 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47133 * 89.99780 * 9 7 5 11 11 H 1.48502 * 109.46922 * 209.99711 * 9 7 5 12 12 H 1.48498 * 109.47290 * 329.99396 * 9 7 5 13 13 C 1.52999 * 109.47232 * 120.00474 * 2 1 3 14 14 O 1.45195 * 109.47190 * 299.99640 * 13 2 1 15 15 C 1.34223 * 117.00254 * 180.02562 * 14 13 2 16 16 O 1.20823 * 120.00098 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99965 * 180.02562 * 15 14 13 18 18 O 1.42901 * 109.47180 * 179.97438 * 17 15 14 19 19 C 1.35909 * 117.00415 * 179.97438 * 18 17 15 20 20 C 1.38863 * 119.97653 * 359.97360 * 19 18 17 21 21 C 1.38247 * 120.24834 * 179.97438 * 20 19 18 22 22 C 1.38000 * 120.21402 * 0.05140 * 21 20 19 23 23 C 1.39622 * 119.95718 * 359.97183 * 22 21 20 24 24 C 1.43198 * 120.12627 * 179.97438 * 23 22 21 25 25 N 9.49535 * 152.68916 * 197.95933 * 14 1 2 26 26 C 1.38439 * 119.98151 * 179.97438 * 19 18 17 27 27 H 1.09007 * 109.46537 * 299.99983 * 1 2 3 28 28 H 1.08997 * 109.47166 * 59.99472 * 1 2 3 29 29 H 1.08991 * 109.47281 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47219 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47386 * 300.00721 * 3 2 1 32 32 H 1.09007 * 109.46669 * 60.00103 * 3 2 1 33 33 H 1.09003 * 109.46869 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47350 * 300.00222 * 4 2 1 35 35 H 0.96996 * 120.00314 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.47358 * 179.97438 * 13 2 1 37 37 H 1.09001 * 109.47070 * 59.99620 * 13 2 1 38 38 H 1.08997 * 109.47747 * 59.99855 * 17 15 14 39 39 H 1.08997 * 109.47220 * 299.99503 * 17 15 14 40 40 H 1.07999 * 119.87572 * 0.02562 * 20 19 18 41 41 H 1.08002 * 119.89322 * 180.02562 * 21 20 19 42 42 H 1.07999 * 120.02261 * 179.97438 * 22 21 20 43 43 H 1.07991 * 120.10926 * 0.27632 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6262 -1.5514 -3.8528 9 14 1.2481 0.3990 -5.2572 10 1 2.2270 1.4399 -5.6614 11 1 1.0822 -0.5800 -6.3614 12 1 -0.0595 1.0375 -4.9612 13 6 2.0401 -0.7213 1.2492 14 8 1.5562 -0.0370 2.4348 15 6 1.9173 -0.5467 3.6227 16 8 2.6142 -1.5325 3.6704 17 6 1.4524 0.1098 4.8971 18 8 1.9634 -0.6128 6.0191 19 6 1.6353 -0.1485 7.2535 20 6 0.8374 0.9809 7.3805 21 6 0.4997 1.4578 8.6334 22 6 0.9543 0.8150 9.7668 23 6 1.7575 -0.3210 9.6493 24 6 2.2316 -0.9905 10.8230 25 7 2.6073 -1.5219 11.7542 26 6 2.0966 -0.8017 8.3835 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4423 -0.0005 31 1 1.6768 1.9564 -0.8899 32 1 1.6768 1.9562 0.8901 33 1 3.1300 -0.7217 -1.2491 34 1 1.6765 -1.7489 -1.2494 35 1 2.8604 -1.8828 -4.7338 36 1 3.1300 -0.7218 1.2490 37 1 1.6767 -1.7490 1.2491 38 1 0.3629 0.1084 4.9302 39 1 1.8156 1.1370 4.9301 40 1 0.4786 1.4882 6.4972 41 1 -0.1216 2.3364 8.7255 42 1 0.6890 1.1904 10.7441 43 1 2.7209 -1.6775 8.2861 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798877216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:09 Heat of formation + Delta-G solvation = -96.654004 kcal Electronic energy + Delta-G solvation = -24781.287447 eV Core-core repulsion = 20984.343400 eV Total energy + Delta-G solvation = -3796.944047 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.81659 -41.03328 -39.13918 -38.51393 -37.28756 -36.87663 -34.40193 -32.42545 -31.67800 -30.02540 -29.07364 -27.91178 -27.63309 -25.26163 -24.76508 -23.50542 -22.22454 -20.38632 -19.89485 -18.89230 -18.33705 -17.98477 -17.74423 -17.47967 -16.97778 -16.62466 -16.49274 -16.37073 -15.28277 -15.18502 -15.00408 -14.99066 -14.71929 -14.41203 -14.17363 -14.04851 -13.94568 -13.76807 -13.51847 -13.33144 -12.94635 -12.73505 -12.70696 -12.63452 -12.28194 -12.25256 -12.10994 -12.09356 -11.94615 -11.84919 -11.56175 -11.35322 -11.00781 -10.88130 -10.51351 -10.02535 -9.32167 -8.14413 -6.22205 -0.27189 0.39168 1.03523 1.08519 1.44592 1.44845 1.55081 1.55947 1.89333 2.39804 2.47201 2.86136 2.92037 3.20453 3.46827 3.80792 3.93595 3.94770 4.01874 4.10718 4.12196 4.18075 4.25043 4.33206 4.50624 4.55497 4.61921 4.76397 4.87125 5.06577 5.12088 5.17027 5.18210 5.33569 5.39000 5.41276 5.45782 5.50052 5.54604 5.55475 5.59929 5.77661 5.89299 6.23879 6.29383 6.36861 6.66095 6.92236 7.45653 8.98106 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.041327 B = 0.001886 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.367938 B =14840.420304 C =15316.120581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.055 4.055 3 C -0.120 4.120 4 C 0.038 3.962 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.259 1.259 13 C 0.090 3.910 14 O -0.335 6.335 15 C 0.455 3.545 16 O -0.536 6.536 17 C 0.073 3.927 18 O -0.323 6.323 19 C 0.115 3.885 20 C -0.168 4.168 21 C -0.070 4.070 22 C -0.097 4.097 23 C -0.003 4.003 24 C 0.279 3.721 25 N -0.463 5.463 26 C -0.115 4.115 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.074 0.926 33 H -0.012 1.012 34 H -0.011 1.011 35 H 0.260 0.740 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.169 0.831 41 H 0.175 0.825 42 H 0.156 0.844 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.323 11.766 24.647 28.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.056 4.056 3 C -0.178 4.178 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.579 5.579 9 Si 0.786 3.214 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.182 1.182 13 C 0.017 3.983 14 O -0.251 6.251 15 C 0.298 3.702 16 O -0.426 6.426 17 C -0.002 4.002 18 O -0.237 6.237 19 C 0.070 3.930 20 C -0.187 4.187 21 C -0.087 4.087 22 C -0.118 4.118 23 C -0.006 4.006 24 C -0.036 4.036 25 N -0.138 5.138 26 C -0.136 4.136 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.187 0.813 41 H 0.192 0.808 42 H 0.173 0.827 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.340 10.367 25.885 28.833 hybrid contribution 0.389 -0.528 -1.685 1.808 sum -6.951 9.839 24.200 27.033 Atomic orbital electron populations 1.21662 0.93212 1.00926 1.01940 1.20645 0.97356 0.96675 0.90877 1.21664 0.99670 0.94461 1.01962 1.19007 0.94480 0.94358 0.92085 1.21552 1.30571 1.12161 0.90863 0.90787 1.25956 0.95653 0.95848 1.02759 1.70114 1.38739 1.24919 1.24158 0.85510 0.79229 0.78080 0.78620 1.20131 1.21628 1.18247 1.23165 0.98367 0.95455 0.81336 1.86402 1.69283 1.55338 1.14122 1.23844 0.77326 0.82362 0.86653 1.90718 1.36488 1.27100 1.88261 1.22224 1.02698 0.96423 0.78810 1.86062 1.71536 1.53744 1.12356 1.18789 0.96439 0.94472 0.83294 1.21960 0.99458 0.95832 1.01459 1.21329 0.97623 0.99863 0.89899 1.21449 0.95861 0.92949 1.01512 1.15654 1.02178 0.97174 0.85626 1.25893 0.92468 0.92495 0.92701 1.81296 1.10200 1.09988 1.12348 1.20340 1.02592 1.01625 0.89092 0.90770 0.92635 0.94429 0.94432 0.92601 0.90762 0.99319 0.99306 0.93143 0.92467 0.92470 0.83638 0.83630 0.81349 0.80753 0.82657 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 8.08 71.98 0.58 -3.44 16 2 C -0.06 -2.07 0.61 -52.18 -0.03 -2.11 16 3 C -0.12 -4.02 8.08 71.98 0.58 -3.44 16 4 C 0.04 1.89 4.04 29.85 0.12 2.01 16 5 C -0.51 -27.04 7.65 25.60 0.20 -26.85 16 6 H 0.07 3.64 5.68 -2.91 -0.02 3.63 16 7 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 8 N -0.94 -56.20 13.29 21.45 0.28 -55.92 16 9 Si 0.96 42.80 29.54 68.60 2.03 44.83 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 13 C 0.09 3.11 4.32 71.98 0.31 3.42 16 14 O -0.34 -8.90 8.88 -51.35 -0.46 -9.36 16 15 C 0.45 11.36 8.03 71.24 0.57 11.93 16 16 O -0.54 -18.68 16.25 28.41 0.46 -18.22 16 17 C 0.07 0.94 5.33 71.24 0.38 1.32 16 18 O -0.32 -5.90 9.67 -73.45 -0.71 -6.61 16 19 C 0.11 1.48 6.68 22.47 0.15 1.63 16 20 C -0.17 -0.92 9.03 22.42 0.20 -0.72 16 21 C -0.07 -0.20 10.02 22.22 0.22 0.03 16 22 C -0.10 -0.58 9.75 22.55 0.22 -0.36 16 23 C 0.00 -0.03 5.73 -21.37 -0.12 -0.16 16 24 C 0.28 4.76 15.33 88.33 1.35 6.11 16 25 N -0.46 -10.48 18.54 19.00 0.35 -10.13 16 26 C -0.12 -1.65 9.69 22.64 0.22 -1.43 16 27 H 0.07 1.97 7.68 -2.38 -0.02 1.95 16 28 H 0.05 1.98 6.62 -2.39 -0.02 1.96 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.98 6.62 -2.38 -0.02 1.97 16 32 H 0.07 1.96 7.68 -2.38 -0.02 1.95 16 33 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 34 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 35 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.06 2.08 8.13 -2.39 -0.02 2.06 16 37 H 0.06 2.08 8.13 -2.39 -0.02 2.06 16 38 H 0.15 0.81 7.66 -2.39 -0.02 0.79 16 39 H 0.15 0.81 7.65 -2.39 -0.02 0.79 16 40 H 0.17 -0.08 6.28 -2.91 -0.02 -0.10 16 41 H 0.18 -0.65 8.06 -2.91 -0.02 -0.67 16 42 H 0.16 0.30 8.06 -2.91 -0.02 0.27 16 43 H 0.13 2.08 8.06 -2.92 -0.02 2.06 16 Total: -1.00 -75.35 372.50 8.40 -66.95 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: 1.02 Total: 0.33 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 5.42 Total: -11.88 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: 0.64 Total: -66.05 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.70 Total: -34.18 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -75.35 8.40 -66.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798877216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.705 kcal (2) G-P(sol) polarization free energy of solvation -75.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds