Wall clock time and date at job start Tue Mar 31 2020 11:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47376 * 2 1 4 4 C 1.53001 * 109.47426 * 239.99372 * 2 1 3 5 5 C 1.50700 * 109.46681 * 60.00123 * 4 2 1 6 6 H 1.08003 * 120.00149 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99892 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99950 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99948 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47468 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46886 * 120.00762 * 9 7 5 12 12 H 1.48498 * 109.47476 * 240.00317 * 9 7 5 13 13 C 1.53001 * 109.46739 * 119.99748 * 2 1 3 14 14 O 1.45207 * 109.47280 * 299.99910 * 13 2 1 15 15 C 1.34221 * 116.99764 * 180.02562 * 14 13 2 16 16 O 1.20824 * 120.00872 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99627 * 180.02562 * 15 14 13 18 18 O 1.42900 * 109.47033 * 180.02562 * 17 15 14 19 19 C 1.35716 * 116.99837 * 180.02562 * 18 17 15 20 20 C 1.38646 * 120.14777 * 359.95108 * 19 18 17 21 21 C 1.38106 * 120.08725 * 180.02562 * 20 19 18 22 22 C 1.38515 * 120.39445 * 0.02562 * 21 20 19 23 23 C 1.37816 * 120.29817 * 0.02562 * 22 21 20 24 24 C 1.39720 * 119.89778 * 359.97438 * 23 22 21 25 25 C 1.43209 * 120.19001 * 180.02562 * 24 23 22 26 26 N 8.91401 * 103.26982 * 109.50583 * 2 1 3 27 27 H 1.08991 * 109.47336 * 300.00523 * 1 2 3 28 28 H 1.09002 * 109.46579 * 60.00534 * 1 2 3 29 29 H 1.08991 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47462 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47089 * 299.99797 * 3 2 1 32 32 H 1.09000 * 109.47404 * 59.99292 * 3 2 1 33 33 H 1.08989 * 109.47411 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47382 * 300.00865 * 4 2 1 35 35 H 0.97000 * 119.99633 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47318 * 180.02562 * 13 2 1 37 37 H 1.09003 * 109.47281 * 59.99914 * 13 2 1 38 38 H 1.09002 * 109.47134 * 60.00144 * 17 15 14 39 39 H 1.09000 * 109.47231 * 299.99909 * 17 15 14 40 40 H 1.07996 * 119.95546 * 0.05194 * 20 19 18 41 41 H 1.07997 * 119.79983 * 180.27761 * 21 20 19 42 42 H 1.07998 * 119.84736 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.05103 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9172 0.8673 -2.3806 7 6 1.8714 -0.4818 -3.7319 8 7 2.6275 -1.5512 -3.8525 9 14 1.2493 0.3991 -5.2571 10 1 0.4247 1.5661 -4.8531 11 1 2.4047 0.8657 -6.0650 12 1 0.4245 -0.5340 -6.0660 13 6 2.0400 -0.7212 1.2493 14 8 1.5559 -0.0366 2.4349 15 6 1.9170 -0.5464 3.6229 16 8 2.6139 -1.5322 3.6708 17 6 1.4520 0.1102 4.8972 18 8 1.9640 -0.6116 6.0192 19 6 1.6354 -0.1483 7.2518 20 6 0.8377 0.9782 7.3825 21 6 0.5045 1.4488 8.6374 22 6 0.9633 0.8020 9.7730 23 6 1.7581 -0.3184 9.6618 24 6 2.1027 -0.8052 8.3983 25 6 2.9277 -1.9693 8.2755 26 7 3.5761 -2.8969 8.1781 27 1 -0.3633 0.5139 0.8898 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7218 -1.2489 34 1 1.6767 -1.7490 -1.2492 35 1 2.8618 -1.8826 -4.7335 36 1 3.1300 -0.7209 1.2496 37 1 1.6766 -1.7489 1.2494 38 1 0.3625 0.1087 4.9301 39 1 1.8151 1.1375 4.9300 40 1 0.4760 1.4879 6.5018 41 1 -0.1209 2.3240 8.7337 42 1 0.6977 1.1779 10.7500 43 1 2.1133 -0.8198 10.5500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798877249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:13 Heat of formation + Delta-G solvation = -79.034175 kcal Electronic energy + Delta-G solvation = -25121.249173 eV Core-core repulsion = 21325.069179 eV Total energy + Delta-G solvation = -3796.179994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.08262 -40.19736 -38.19783 -37.13607 -36.55303 -35.50145 -32.39366 -32.01336 -30.97836 -29.30147 -27.24021 -26.47845 -26.30118 -24.41136 -23.40733 -22.73236 -20.99655 -19.81266 -18.46724 -18.15318 -17.46435 -17.13354 -16.74508 -16.29287 -15.77638 -15.68656 -15.52719 -14.85626 -14.57479 -14.24885 -13.89567 -13.66355 -13.46377 -13.35491 -13.01759 -12.97370 -12.79568 -12.39269 -12.38624 -12.12173 -12.10040 -11.68196 -11.67231 -11.33069 -11.02403 -10.85393 -10.66722 -10.57299 -10.40523 -10.37503 -10.23872 -9.81277 -9.58404 -9.28088 -8.98687 -8.84599 -8.40539 -6.04288 -4.05791 0.30542 0.78104 1.86129 2.12130 2.51117 2.62691 3.18095 3.28224 3.36381 3.39045 3.44748 3.56820 4.20917 4.28763 4.41257 4.47139 4.57158 4.66333 4.67398 4.75258 4.90008 5.20827 5.31150 5.39975 5.43362 5.56678 5.66771 5.73888 5.84891 5.93298 6.04788 6.11430 6.29386 6.43269 6.50854 6.62936 6.64504 6.69843 7.04501 7.05179 7.07328 7.33655 7.56566 7.67389 7.74896 7.93942 8.34954 8.98713 9.57555 11.07317 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030227 B = 0.002146 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.087148 B =13047.270924 C =13771.686994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.058 4.058 3 C -0.127 4.127 4 C 0.034 3.966 5 C -0.510 4.510 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.081 3.919 14 O -0.345 6.345 15 C 0.456 3.544 16 O -0.487 6.487 17 C 0.066 3.934 18 O -0.288 6.288 19 C 0.178 3.822 20 C -0.211 4.211 21 C -0.047 4.047 22 C -0.158 4.158 23 C -0.032 4.032 24 C -0.057 4.057 25 C 0.256 3.744 26 N -0.408 5.408 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.143 0.857 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.746 9.544 27.085 29.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.058 4.058 3 C -0.184 4.184 4 C -0.003 4.003 5 C -0.548 4.548 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.008 3.992 14 O -0.262 6.262 15 C 0.297 3.703 16 O -0.373 6.373 17 C -0.010 4.010 18 O -0.200 6.200 19 C 0.129 3.871 20 C -0.230 4.230 21 C -0.066 4.066 22 C -0.177 4.177 23 C -0.053 4.053 24 C -0.061 4.061 25 C -0.060 4.060 26 N -0.084 5.084 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.160 0.840 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.316 7.506 26.682 28.223 hybrid contribution -0.510 0.731 -1.086 1.405 sum -5.826 8.237 25.596 27.513 Atomic orbital electron populations 1.21726 0.94735 1.01027 1.00895 1.20840 0.96227 0.96259 0.92496 1.21726 1.00110 0.95649 1.00895 1.19143 0.96461 0.95352 0.89372 1.21169 1.31255 1.12143 0.90220 0.91983 1.25032 0.95285 0.95107 0.99192 1.69978 1.36908 1.23037 1.23451 0.86544 0.78605 0.79665 0.83234 1.19709 1.21102 1.21098 1.23637 0.99193 0.96076 0.80296 1.86430 1.69527 1.55951 1.14299 1.22667 0.78768 0.83082 0.85830 1.90747 1.34059 1.24672 1.87811 1.22038 1.00960 0.96133 0.81870 1.86111 1.69867 1.52477 1.11495 1.18947 0.92581 0.91967 0.83569 1.21299 1.03629 0.98052 0.99989 1.21225 0.95781 0.98192 0.91411 1.21039 1.00508 0.96708 0.99405 1.21066 0.94527 0.94912 0.94747 1.15311 1.04145 0.94463 0.92159 1.25303 0.93555 0.92912 0.94206 1.81249 1.09808 1.10809 1.06504 0.94210 0.91440 0.93687 0.93690 0.91436 0.94217 0.96278 0.96279 0.93023 0.91300 0.91294 0.87076 0.87084 0.83966 0.84646 0.84608 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.08 37.16 0.30 -1.98 16 2 C -0.06 -1.13 0.61 -154.51 -0.09 -1.22 16 3 C -0.13 -2.28 8.08 37.16 0.30 -1.98 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.47 7.65 -34.44 -0.26 -13.74 16 6 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 9 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.08 1.44 4.32 37.16 0.16 1.60 16 14 O -0.35 -5.20 8.88 -39.23 -0.35 -5.55 16 15 C 0.46 6.52 8.03 36.01 0.29 6.81 16 16 O -0.49 -9.06 16.25 -25.48 -0.41 -9.47 16 17 C 0.07 0.60 5.33 36.01 0.19 0.79 16 18 O -0.29 -3.29 9.10 -38.81 -0.35 -3.65 16 19 C 0.18 1.53 6.69 -38.71 -0.26 1.27 16 20 C -0.21 -1.13 9.03 -39.48 -0.36 -1.49 16 21 C -0.05 -0.18 10.03 -39.53 -0.40 -0.57 16 22 C -0.16 -0.59 10.02 -39.63 -0.40 -0.98 16 23 C -0.03 -0.17 9.76 -39.18 -0.38 -0.55 16 24 C -0.06 -0.49 5.75 -106.69 -0.61 -1.11 16 25 C 0.26 3.10 14.87 -22.47 -0.33 2.77 16 26 N -0.41 -6.11 18.54 41.84 0.78 -5.33 16 27 H 0.04 0.61 7.68 -51.93 -0.40 0.21 16 28 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 32 H 0.04 0.61 7.68 -51.93 -0.40 0.21 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 37 H 0.07 1.27 8.13 -51.93 -0.42 0.84 16 38 H 0.11 0.66 7.66 -51.93 -0.40 0.27 16 39 H 0.11 0.66 7.66 -51.93 -0.40 0.27 16 40 H 0.14 0.46 6.30 -52.49 -0.33 0.13 16 41 H 0.14 0.17 8.06 -52.49 -0.42 -0.25 16 42 H 0.14 0.18 8.06 -52.49 -0.42 -0.25 16 43 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -34.39 371.88 -6.93 -41.32 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -5.85 Total: -5.16 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -2.07 Total: -8.23 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 1.51 Total: -30.91 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -1.12 Total: -18.67 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.39 -6.93 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798877249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.713 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds