Wall clock time and date at job start Tue Mar 31 2020 11:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47376 * 2 1 4 4 C 1.53001 * 109.47426 * 239.99372 * 2 1 3 5 5 C 1.50700 * 109.46681 * 60.00123 * 4 2 1 6 6 H 1.08003 * 120.00149 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99892 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99950 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99948 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47468 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46886 * 120.00762 * 9 7 5 12 12 H 1.48498 * 109.47476 * 240.00317 * 9 7 5 13 13 C 1.53001 * 109.46739 * 119.99748 * 2 1 3 14 14 O 1.45207 * 109.47280 * 299.99910 * 13 2 1 15 15 C 1.34221 * 116.99764 * 180.02562 * 14 13 2 16 16 O 1.20824 * 120.00872 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99627 * 180.02562 * 15 14 13 18 18 O 1.42900 * 109.47033 * 180.02562 * 17 15 14 19 19 C 1.35716 * 116.99837 * 180.02562 * 18 17 15 20 20 C 1.38646 * 120.14777 * 359.95108 * 19 18 17 21 21 C 1.38106 * 120.08725 * 180.02562 * 20 19 18 22 22 C 1.38515 * 120.39445 * 0.02562 * 21 20 19 23 23 C 1.37816 * 120.29817 * 0.02562 * 22 21 20 24 24 C 1.39720 * 119.89778 * 359.97438 * 23 22 21 25 25 C 1.43209 * 120.19001 * 180.02562 * 24 23 22 26 26 N 8.91401 * 103.26982 * 109.50583 * 2 1 3 27 27 H 1.08991 * 109.47336 * 300.00523 * 1 2 3 28 28 H 1.09002 * 109.46579 * 60.00534 * 1 2 3 29 29 H 1.08991 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47462 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47089 * 299.99797 * 3 2 1 32 32 H 1.09000 * 109.47404 * 59.99292 * 3 2 1 33 33 H 1.08989 * 109.47411 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47382 * 300.00865 * 4 2 1 35 35 H 0.97000 * 119.99633 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47318 * 180.02562 * 13 2 1 37 37 H 1.09003 * 109.47281 * 59.99914 * 13 2 1 38 38 H 1.09002 * 109.47134 * 60.00144 * 17 15 14 39 39 H 1.09000 * 109.47231 * 299.99909 * 17 15 14 40 40 H 1.07996 * 119.95546 * 0.05194 * 20 19 18 41 41 H 1.07997 * 119.79983 * 180.27761 * 21 20 19 42 42 H 1.07998 * 119.84736 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.05103 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9172 0.8673 -2.3806 7 6 1.8714 -0.4818 -3.7319 8 7 2.6275 -1.5512 -3.8525 9 14 1.2493 0.3991 -5.2571 10 1 0.4247 1.5661 -4.8531 11 1 2.4047 0.8657 -6.0650 12 1 0.4245 -0.5340 -6.0660 13 6 2.0400 -0.7212 1.2493 14 8 1.5559 -0.0366 2.4349 15 6 1.9170 -0.5464 3.6229 16 8 2.6139 -1.5322 3.6708 17 6 1.4520 0.1102 4.8972 18 8 1.9640 -0.6116 6.0192 19 6 1.6354 -0.1483 7.2518 20 6 0.8377 0.9782 7.3825 21 6 0.5045 1.4488 8.6374 22 6 0.9633 0.8020 9.7730 23 6 1.7581 -0.3184 9.6618 24 6 2.1027 -0.8052 8.3983 25 6 2.9277 -1.9693 8.2755 26 7 3.5761 -2.8969 8.1781 27 1 -0.3633 0.5139 0.8898 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7218 -1.2489 34 1 1.6767 -1.7490 -1.2492 35 1 2.8618 -1.8826 -4.7335 36 1 3.1300 -0.7209 1.2496 37 1 1.6766 -1.7489 1.2494 38 1 0.3625 0.1087 4.9301 39 1 1.8151 1.1375 4.9300 40 1 0.4760 1.4879 6.5018 41 1 -0.1209 2.3240 8.7337 42 1 0.6977 1.1779 10.7500 43 1 2.1133 -0.8198 10.5500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798877249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:13 Heat of formation + Delta-G solvation = -98.554870 kcal Electronic energy + Delta-G solvation = -25122.095653 eV Core-core repulsion = 21325.069179 eV Total energy + Delta-G solvation = -3797.026474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.92432 -41.13479 -39.04357 -38.40160 -37.44001 -36.95158 -34.42792 -32.51655 -31.49415 -30.14701 -29.12221 -27.94343 -27.68103 -25.13003 -24.87222 -23.56157 -22.02893 -20.44958 -19.97794 -18.90371 -18.49519 -18.34060 -18.08337 -17.59161 -16.76393 -16.55384 -16.50662 -15.92119 -15.35981 -15.32631 -15.19500 -14.88095 -14.79510 -14.27834 -14.14304 -14.07651 -13.96012 -13.80346 -13.58375 -13.31927 -12.99015 -12.71342 -12.68467 -12.53619 -12.32042 -12.28367 -12.20059 -12.11876 -11.94872 -11.90576 -11.64507 -11.40151 -11.04538 -10.90428 -10.54683 -10.00342 -9.32570 -8.16614 -6.24663 -0.17392 0.40190 0.97416 1.00521 1.42111 1.43105 1.55351 1.63055 1.96655 2.34226 2.44798 2.88611 2.91320 3.18237 3.39152 3.85444 3.88966 3.89459 3.94501 4.02990 4.08154 4.20582 4.31081 4.45926 4.47127 4.51782 4.57432 4.72866 4.90004 5.03676 5.08363 5.15021 5.19413 5.34178 5.37612 5.42570 5.46713 5.51334 5.52658 5.53087 5.70932 5.74250 5.86787 6.12353 6.26343 6.47961 6.58734 6.89918 7.43292 8.96289 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030227 B = 0.002146 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.087148 B =13047.270924 C =13771.686994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.054 4.054 3 C -0.120 4.120 4 C 0.037 3.963 5 C -0.511 4.511 6 H 0.075 0.925 7 C -0.008 4.008 8 N -0.939 5.939 9 Si 0.962 3.038 10 H -0.254 1.254 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.090 3.910 14 O -0.333 6.333 15 C 0.453 3.547 16 O -0.540 6.540 17 C 0.073 3.927 18 O -0.329 6.329 19 C 0.159 3.841 20 C -0.207 4.207 21 C -0.035 4.035 22 C -0.149 4.149 23 C -0.030 4.030 24 C -0.091 4.091 25 C 0.277 3.723 26 N -0.481 5.481 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.074 0.926 33 H -0.013 1.013 34 H -0.013 1.013 35 H 0.260 0.740 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.168 0.832 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.717 13.745 29.131 33.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.054 4.054 3 C -0.178 4.178 4 C 0.000 4.000 5 C -0.549 4.549 6 H 0.094 0.906 7 C -0.204 4.204 8 N -0.581 5.581 9 Si 0.788 3.212 10 H -0.178 1.178 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.016 3.984 14 O -0.249 6.249 15 C 0.297 3.703 16 O -0.429 6.429 17 C -0.002 4.002 18 O -0.242 6.242 19 C 0.111 3.889 20 C -0.225 4.225 21 C -0.053 4.053 22 C -0.167 4.167 23 C -0.050 4.050 24 C -0.095 4.095 25 C -0.037 4.037 26 N -0.158 5.158 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.006 0.994 34 H 0.006 0.994 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.169 0.831 39 H 0.169 0.831 40 H 0.187 0.813 41 H 0.189 0.811 42 H 0.185 0.815 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.312 11.742 28.757 32.155 hybrid contribution 0.367 -0.509 -1.563 1.684 sum -7.945 11.233 27.195 30.477 Atomic orbital electron populations 1.21666 0.93108 1.00928 1.02058 1.20638 0.97423 0.96672 0.90657 1.21666 0.99642 0.94394 1.02058 1.19019 0.94447 0.94356 0.92204 1.21570 1.30471 1.12138 0.90744 0.90649 1.25997 0.95641 0.95905 1.02892 1.70135 1.38775 1.25019 1.24135 0.85427 0.78044 0.78830 0.78936 1.17792 1.21060 1.21049 1.23189 0.98277 0.95452 0.81440 1.86402 1.69214 1.55235 1.14014 1.23889 0.77299 0.82334 0.86793 1.90739 1.36622 1.27280 1.88296 1.22310 1.02935 0.96458 0.78453 1.86041 1.71140 1.54103 1.12921 1.19179 0.94121 0.93447 0.82139 1.21621 1.02392 0.96625 1.01903 1.21723 0.94612 0.98488 0.90503 1.21468 0.98762 0.95331 1.01132 1.21319 0.94412 0.95475 0.93772 1.15670 1.05607 0.94241 0.94021 1.26079 0.92523 0.92854 0.92233 1.81236 1.12571 1.13235 1.08747 0.90721 0.92425 0.94499 0.94501 0.92420 0.90727 0.99418 0.99419 0.93133 0.92667 0.92660 0.83128 0.83136 0.81329 0.81105 0.81473 0.82818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.15 8.08 71.98 0.58 -3.57 16 2 C -0.05 -2.08 0.61 -52.18 -0.03 -2.11 16 3 C -0.12 -4.15 8.08 71.98 0.58 -3.57 16 4 C 0.04 1.89 4.04 29.85 0.12 2.01 16 5 C -0.51 -27.35 7.65 25.60 0.20 -27.16 16 6 H 0.08 3.77 5.68 -2.91 -0.02 3.75 16 7 C -0.01 -0.43 5.46 84.65 0.46 0.04 16 8 N -0.94 -57.20 13.29 21.45 0.28 -56.91 16 9 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 10 H -0.25 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.09 3.28 4.32 71.98 0.31 3.59 16 14 O -0.33 -9.47 8.88 -51.33 -0.46 -9.92 16 15 C 0.45 12.55 8.03 71.24 0.57 13.13 16 16 O -0.54 -20.87 16.25 28.40 0.46 -20.41 16 17 C 0.07 1.10 5.33 71.24 0.38 1.48 16 18 O -0.33 -7.21 9.10 -71.29 -0.65 -7.86 16 19 C 0.16 2.42 6.69 22.83 0.15 2.57 16 20 C -0.21 -1.27 9.03 22.34 0.20 -1.07 16 21 C -0.03 -0.07 10.03 22.30 0.22 0.15 16 22 C -0.15 -0.42 10.02 22.24 0.22 -0.19 16 23 C -0.03 -0.25 9.76 22.53 0.22 -0.03 16 24 C -0.09 -1.52 5.75 -21.21 -0.12 -1.64 16 25 C 0.28 7.13 14.87 88.33 1.31 8.44 16 26 N -0.48 -15.63 18.54 19.01 0.35 -15.28 16 27 H 0.07 2.05 7.68 -2.39 -0.02 2.03 16 28 H 0.06 2.09 6.62 -2.39 -0.02 2.08 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 2.09 6.62 -2.39 -0.02 2.08 16 32 H 0.07 2.05 7.68 -2.39 -0.02 2.03 16 33 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 34 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 37 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 38 H 0.15 1.08 7.66 -2.39 -0.02 1.06 16 39 H 0.15 1.08 7.66 -2.39 -0.02 1.06 16 40 H 0.17 0.07 6.30 -2.91 -0.02 0.05 16 41 H 0.17 -0.78 8.06 -2.91 -0.02 -0.81 16 42 H 0.17 -0.53 8.06 -2.91 -0.02 -0.55 16 43 H 0.15 0.75 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -82.23 371.88 8.43 -73.80 By element: Atomic # 1 Polarization: -1.94 SS G_CDS: 1.02 Total: -0.92 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 5.39 Total: -7.93 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: 0.64 Total: -72.19 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -0.64 Total: -38.19 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -82.23 8.43 -73.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798877249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.757 kcal (2) G-P(sol) polarization free energy of solvation -82.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds