Wall clock time and date at job start Tue Mar 31 2020 11:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29874 * 124.83278 * 2 1 4 4 C 1.36134 * 108.76556 * 179.97438 * 3 2 1 5 5 C 1.39245 * 133.76172 * 179.97438 * 4 3 2 6 6 C 1.39248 * 119.46464 * 180.02562 * 5 4 3 7 7 C 1.47589 * 119.95537 * 180.02562 * 6 5 4 8 8 O 1.21485 * 120.00508 * 359.97438 * 7 6 5 9 9 O 1.34731 * 119.99738 * 179.97438 * 7 6 5 10 10 C 1.45206 * 116.99944 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47002 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47162 * 300.00216 * 11 10 9 13 13 C 1.52997 * 109.46984 * 60.00261 * 11 10 9 14 14 C 1.53000 * 109.47113 * 179.97438 * 11 10 9 15 15 C 1.50700 * 109.47223 * 179.97438 * 14 11 10 16 16 H 1.07995 * 119.99804 * 0.02562 * 15 14 11 17 17 C 1.37872 * 120.00012 * 180.02562 * 15 14 11 18 18 N 1.31513 * 120.00121 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00112 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47101 * 89.99965 * 19 17 15 21 21 H 1.48493 * 109.47445 * 210.00328 * 19 17 15 22 22 H 1.48500 * 109.47082 * 330.00160 * 19 17 15 23 23 C 1.40094 * 120.08537 * 0.02562 * 6 5 4 24 24 C 1.36515 * 120.46769 * 359.97438 * 23 6 5 25 25 C 1.38911 * 120.19797 * 359.97438 * 24 23 6 26 26 O 1.34253 * 124.83777 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47035 * 90.00268 * 1 2 3 28 28 H 1.09008 * 109.47001 * 209.99858 * 1 2 3 29 29 H 1.08994 * 109.47215 * 329.99706 * 1 2 3 30 30 H 1.08010 * 120.26593 * 359.97438 * 5 4 3 31 31 H 1.08997 * 109.46868 * 299.99689 * 10 9 7 32 32 H 1.09000 * 109.47047 * 60.00155 * 10 9 7 33 33 H 1.09000 * 109.47489 * 60.00036 * 12 11 10 34 34 H 1.08999 * 109.47505 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.47136 * 299.99940 * 12 11 10 36 36 H 1.08997 * 109.47739 * 59.99731 * 13 11 10 37 37 H 1.08999 * 109.47150 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.47000 * 299.99556 * 13 11 10 39 39 H 1.08994 * 109.46982 * 300.00602 * 14 11 10 40 40 H 1.09005 * 109.46825 * 59.99751 * 14 11 10 41 41 H 0.96997 * 119.99786 * 179.97438 * 18 17 15 42 42 H 1.07998 * 119.77055 * 180.27440 * 23 6 5 43 43 H 1.07995 * 119.89879 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2488 1.0660 0.0000 4 6 3.5569 0.6893 0.0006 5 6 4.7607 1.3891 0.0004 6 6 5.9622 0.6852 0.0006 7 6 7.2445 1.4160 0.0010 8 8 7.2513 2.6308 0.0006 9 8 8.4075 0.7358 0.0017 10 6 9.6297 1.5198 0.0015 11 6 10.8378 0.5809 0.0031 12 6 10.7973 -0.3002 1.2532 13 6 10.7985 -0.3028 -1.2453 14 6 12.1256 1.4070 0.0022 15 6 13.3156 0.4823 0.0044 16 1 13.1680 -0.5875 0.0058 17 6 14.5926 1.0021 0.0045 18 7 15.6310 0.1951 0.0059 19 14 14.8478 2.8526 0.0028 20 1 14.9146 3.3444 1.4024 21 1 16.1168 3.1767 -0.6969 22 1 13.7146 3.5079 -0.6985 23 6 5.9554 -0.7157 0.0005 24 6 4.7754 -1.4022 0.0007 25 6 3.5677 -0.7158 0.0015 26 8 2.2739 -1.1019 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 4.7625 2.4692 -0.0008 31 1 9.6583 2.1478 -0.8889 32 1 9.6579 2.1490 0.8911 33 1 9.8799 -0.8887 1.2534 34 1 11.6582 -0.9688 1.2546 35 1 10.8253 0.3294 2.1425 36 1 10.8273 0.3249 -2.1359 37 1 11.6594 -0.9713 -1.2444 38 1 9.8811 -0.8913 -1.2450 39 1 12.1542 2.0344 -0.8886 40 1 12.1538 2.0369 0.8913 41 1 16.5294 0.5609 0.0057 42 1 6.8902 -1.2565 0.0052 43 1 4.7809 -2.4821 0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798878388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:41 Heat of formation + Delta-G solvation = -61.602141 kcal Electronic energy + Delta-G solvation = -25524.722612 eV Core-core repulsion = 21729.298528 eV Total energy + Delta-G solvation = -3795.424084 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.71902 -40.48254 -38.35826 -37.17138 -35.54596 -35.31571 -32.36855 -32.17131 -31.30348 -28.89709 -27.94095 -26.60643 -26.47678 -24.69081 -22.89979 -22.55738 -22.03418 -21.24457 -18.81748 -18.16824 -17.95223 -17.32688 -16.96118 -16.62400 -16.40795 -16.23399 -14.96622 -14.59053 -14.28101 -14.18928 -13.99119 -13.79991 -13.76816 -13.44706 -13.31588 -13.03420 -12.91853 -12.47765 -12.45954 -12.28756 -11.95431 -11.71793 -11.37998 -11.08416 -11.00469 -10.92887 -10.65929 -10.62234 -10.44631 -10.38377 -9.87995 -9.76287 -9.56328 -9.28883 -9.01924 -8.93713 -8.55228 -6.05513 -4.03068 0.23571 0.31924 1.91477 1.97971 2.38778 2.59865 3.30032 3.33913 3.37859 3.38509 3.41404 4.00489 4.40970 4.43884 4.50603 4.56284 4.67134 4.78831 4.90736 4.94626 5.10860 5.25880 5.34148 5.38460 5.38932 5.56211 5.66766 5.70709 5.76987 5.81355 5.93984 6.06494 6.06594 6.23449 6.45315 6.49032 6.64495 6.66003 6.92224 7.04373 7.06727 7.12894 7.18034 7.32638 7.72414 7.80182 8.51549 8.98775 9.56509 11.07058 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.038517 B = 0.002299 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.773665 B =12177.963756 C =12703.073299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.246 3.754 3 N -0.472 5.472 4 C 0.008 3.992 5 C 0.008 3.992 6 C -0.118 4.118 7 C 0.507 3.493 8 O -0.506 6.506 9 O -0.341 6.341 10 C 0.077 3.923 11 C -0.049 4.049 12 C -0.128 4.128 13 C -0.128 4.128 14 C -0.003 4.003 15 C -0.510 4.510 16 H 0.080 0.920 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.874 3.126 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.266 1.266 23 C -0.039 4.039 24 C -0.102 4.102 25 C 0.036 3.964 26 O -0.212 6.212 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.152 0.848 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.018 0.982 40 H 0.014 0.986 41 H 0.263 0.737 42 H 0.161 0.839 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.414 -3.597 -0.033 29.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.034 3.966 3 N -0.202 5.202 4 C -0.103 4.103 5 C -0.011 4.011 6 C -0.120 4.120 7 C 0.352 3.648 8 O -0.396 6.396 9 O -0.257 6.257 10 C 0.004 3.996 11 C -0.049 4.049 12 C -0.185 4.185 13 C -0.185 4.185 14 C -0.041 4.041 15 C -0.548 4.548 16 H 0.098 0.902 17 C -0.134 4.134 18 N -0.541 5.541 19 Si 0.702 3.298 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.191 1.191 23 C -0.057 4.057 24 C -0.120 4.120 25 C -0.015 4.015 26 O -0.103 6.103 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.170 0.830 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.178 0.822 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -29.373 -2.620 -0.035 29.489 hybrid contribution 0.617 0.555 0.013 0.830 sum -28.756 -2.065 -0.022 28.830 Atomic orbital electron populations 1.20448 0.80572 1.05766 1.05361 1.26546 0.96734 0.78055 0.95218 1.70659 1.00610 1.28903 1.20032 1.19606 0.92038 0.91185 1.07474 1.20379 0.87214 1.01167 0.92315 1.18975 0.90603 0.93668 1.08787 1.20791 0.84795 0.85902 0.73358 1.90847 1.88320 1.14692 1.45716 1.86520 1.14629 1.41540 1.83050 1.23581 0.79832 0.94031 1.02130 1.20592 0.91996 0.95518 0.96805 1.21740 1.01198 0.99553 0.96047 1.21736 1.01196 0.99534 0.96055 1.19630 0.92112 0.95779 0.96550 1.21027 0.88583 0.94637 1.50519 0.90197 1.24991 0.96151 0.97544 0.94743 1.69895 0.98343 1.34684 1.51179 0.86866 0.77726 0.86698 0.78523 1.20338 1.21426 1.19066 1.21126 0.98461 0.92636 0.93500 1.19617 0.86781 1.00944 1.04694 1.20606 0.83965 0.94443 1.02498 1.84493 1.15253 1.36365 1.74223 0.88168 0.88709 0.87501 0.82995 0.91370 0.91383 0.93956 0.90960 0.93759 0.93755 0.90960 0.93954 0.96331 0.96785 0.92748 0.82169 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.21 10.51 36.00 0.38 0.17 16 2 C 0.25 2.13 8.23 -13.11 -0.11 2.02 16 3 N -0.47 -5.44 11.34 -8.72 -0.10 -5.54 16 4 C 0.01 0.09 7.23 -84.73 -0.61 -0.52 16 5 C 0.01 0.10 9.64 -38.83 -0.37 -0.28 16 6 C -0.12 -1.43 5.87 -105.01 -0.62 -2.05 16 7 C 0.51 7.53 7.89 34.55 0.27 7.80 16 8 O -0.51 -8.79 16.12 -19.25 -0.31 -9.10 16 9 O -0.34 -5.20 8.11 -40.58 -0.33 -5.53 16 10 C 0.08 1.32 4.33 37.16 0.16 1.48 16 11 C -0.05 -0.92 0.61 -154.51 -0.09 -1.02 16 12 C -0.13 -2.31 8.08 37.16 0.30 -2.01 16 13 C -0.13 -2.31 8.08 37.16 0.30 -2.01 16 14 C 0.00 -0.08 3.11 -27.88 -0.09 -0.16 16 15 C -0.51 -13.66 8.20 -34.44 -0.28 -13.94 16 16 H 0.08 2.26 5.92 -52.49 -0.31 1.95 16 17 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 18 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 19 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 23 C -0.04 -0.38 9.54 -39.51 -0.38 -0.76 16 24 C -0.10 -0.91 9.99 -39.95 -0.40 -1.31 16 25 C 0.04 0.39 7.43 -38.48 -0.29 0.10 16 26 O -0.21 -2.06 10.77 3.82 0.04 -2.02 16 27 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.09 0.13 8.14 -51.92 -0.42 -0.29 16 29 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.15 1.84 7.64 -52.48 -0.40 1.44 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 34 H 0.07 1.44 6.62 -51.93 -0.34 1.09 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.44 6.62 -51.93 -0.34 1.09 16 38 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 39 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 40 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.16 1.36 7.58 -52.49 -0.40 0.96 16 43 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 360.59 15.07 5.43 5.43 Total: -1.00 -32.78 360.59 -6.99 -39.77 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -5.91 Total: -2.78 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -1.92 Total: -10.68 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.67 Total: -31.84 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.60 Total: -16.65 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.78 -6.99 -39.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798878388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.827 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds